TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.4
(870 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX254088.1|BX254088 BX254088 Pinus pinaster differenciat... 291 4e-078
gb|CF473119.1|CF473119 RTDS1_1_C07.g1_A015 Drought-stressed... 291 4e-078
gb|CF668112.1|CF668112 RTCNT1_34_A11.g1_A029 Root control P... 291 4e-078
gb|DN463765.1|DN463765 EST959564 Sequencing ESTs from loblo... 291 4e-078
gb|DR110673.1|DR110673 RTS1_12_F08.b1_A029 Roots minus sulf... 291 4e-078
gb|DT627323.1|DT627323 EST1160399 Sequencing ESTs from lobl... 291 4e-078
gb|AW981614.1|AW981614 PC14F09 Pine TriplEx pollen cone lib... 290 1e-077
gb|BX252375.1|BX252375 BX252375 Pinus pinaster differenciat... 290 1e-077
gb|CF473592.1|CF473592 RTWW2_3_A05.g1_A021 Well-watered lob... 289 2e-077
gb|BX680840.1|BX680840 BX680840 RS Pinus pinaster cDNA clon... 274 5e-073
gb|DR681750.1|DR681750 EST1071825 Normalized pine embryo li... 253 2e-066
gb|DR683136.1|DR683136 EST1073212 Normalized pine embryo li... 247 1e-064
gb|CF389415.1|CF389415 RTDR2_7_A04.b1_A021 Loblolly pine ro... 232 2e-060
gb|DT637807.1|DT637807 EST1152738 Normalized pine embryo li... 149 8e-060
gb|DR692633.1|DR692633 EST1082721 Normalized pine embryo li... 149 8e-060
gb|AW043371.1|AW043371 ST32E12 Pine TriplEx shoot tip libra... 218 4e-056
gb|DR683137.1|DR683137 EST1073213 Normalized pine embryo li... 186 2e-046
gb|AW438035.1|AW438035 ST83G04 Pine TriplEx shoot tip libra... 149 2e-035
gb|BI397852.1|BI397852 NXPV_108_E04_F NXPV (Nsf Xylem Plani... 103 3e-033
gb|BM367466.1|BM367466 NXLV_049_F07_F NXLV (Nsf Xylem Late ... 137 1e-031
gb|DR113052.1|DR113052 RTS1_32_D10.g1_A029 Roots minus sulf... 110 2e-023
gb|CX649415.1|CX649415 COLD1_35_D06.b1_A029 Root cold Pinus... 103 2e-021
>gb|BX254088.1|BX254088 BX254088 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093B08, mRNA sequence
Length = 674
Score = 291 bits (630), Expect = 4e-078
Identities = 117/138 (84%), Positives = 131/138 (94%)
Frame = +3 / +1
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 76 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 255
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLL 362
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+L
Sbjct: 256 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYIL 435
Query: 363 IGALGLLVITSKD*SVKL 416
IGALGLLVITSK+* + L
Sbjct: 436 IGALGLLVITSKE*RLSL 489
Score = 215 bits (463), Expect = 5e-055
Identities = 99/132 (75%), Positives = 107/132 (81%)
Frame = -3 / -1
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 473 SFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 294
Query: 220 KLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNP 41
LLSPLVR STS VS RS T ITR TIGISRPS KTTISP R+G+LLIC+N ISPLLNP
Sbjct: 293 *LLSPLVRTSTSPVSCRSCTFITR*TIGISRPSTWKTTISPARMGALLICRNNISPLLNP 114
Query: 40 GSMLPERTTTTG 5
GSMLPE TTTTG
Sbjct: 113 GSMLPESTTTTG 78
Score = 146 bits (314), Expect = 2e-034
Identities = 64/134 (47%), Positives = 87/134 (64%)
Frame = -2 / -3
Query: 407 TLIFRRYDQQAQCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SV 228
+L FRRY QQ QC+ Q VL+ H NC+PANIW +S +H +MLL P L + I +
Sbjct: 480 SLFFRRYYQQTQCSYQNVLD*GLFGHKNCHPANIW*KPNSAAHYMMLL*P*LTLSIQKPI 301
Query: 227 IPKIIVTFGEDVHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPF 48
I I++ F +D + S L+FM L ++ NF+ I++E+N FS N F HMQKQ I PF
Sbjct: 300 ISIIVIPFSKDFNLTSFLSFMYLYNTMNYRNFSTINMEDNNFSSTNGCFTHMQKQYIAPF 121
Query: 47 KSRFHATRENHYNW 6
KSRFHAT +++YNW
Sbjct: 120 KSRFHAT*KHNYNW 79
>gb|CF473119.1|CF473119 RTDS1_1_C07.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_1_C07_A015 5', mRNA sequence
Length = 631
Score = 291 bits (630), Expect = 4e-078
Identities = 117/138 (84%), Positives = 131/138 (94%)
Frame = +3 / +1
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 181 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 360
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLL 362
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+L
Sbjct: 361 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYIL 540
Query: 363 IGALGLLVITSKD*SVKL 416
IGALGLLVITSK+* + L
Sbjct: 541 IGALGLLVITSKE*RLSL 594
Score = 214 bits (461), Expect = 9e-055
Identities = 99/132 (75%), Positives = 107/132 (81%)
Frame = -3 / -3
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 578 SFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 399
Query: 220 KLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNP 41
LLSPLVR STS VS RS T ITR TIGISRPS KTTISP R+G+LLIC+N ISPLLNP
Sbjct: 398 *LLSPLVRTSTSPVSCRSCTFITR*TIGISRPST*KTTISPARMGALLICRNNISPLLNP 219
Query: 40 GSMLPERTTTTG 5
GSMLPE TTTTG
Sbjct: 218 GSMLPESTTTTG 183
Score = 146 bits (313), Expect = 2e-034
Identities = 64/134 (47%), Positives = 88/134 (65%)
Frame = -2 / -2
Query: 407 TLIFRRYDQQAQCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SV 228
+L FRRY QQ QC+ Q VL+ SH NC+P NIW +S +H +MLL P L + I +
Sbjct: 585 SLFFRRYYQQTQCSYQNVLD*GLFSHKNCHPTNIW*KPNSAAHYMMLL*P*LTLSIQKPI 406
Query: 227 IPKIIVTFGEDVHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPF 48
I I++ F +D + S L+FM L ++ NF+ I++++N FS N F HMQKQ ITPF
Sbjct: 405 ISIIVIPFSKDFNLPSFLSFMYLYNTMNYRNFSTINMKDNNFSSTNGCFTHMQKQYITPF 226
Query: 47 KSRFHATRENHYNW 6
KSRFHAT +++YNW
Sbjct: 225 KSRFHAT*KHNYNW 184
Score = 101 bits (216), Expect = 6e-021
Identities = 56/134 (41%), Positives = 75/134 (55%)
Frame = +2 / +3
Query: 5 TSCSGSLW*HGTWI*KG*YPVFAYEQRSYSHRRNSCFQYRWP*NSNCPPRN*GP*TSGHC 184
TSCS + *HGTWI*KG*Y V AYE ++S RN C W NS G *T+ +
Sbjct: 183 TSCSCAFR*HGTWI*KG*YIVSAYE*STHSCWRNCCLSC*WSRNSYSSSCYKGT*TTRNW 362
Query: 185 RSGHPHQR*Q*FWG*PTIICTWAALAPATSHYGTCCGLPSICWLDYNYHD*ETIY*VPAD 364
P+ R W * +C+ +A+A S+ G C + +ICWL N +D*+ + V +D
Sbjct: 363 GG*SPY*RG*QLWR**AFVCSRSAMATEASYNGPRCWVFTICWLGDNSYD*KALNQVHSD 542
Query: 365 WCTGLAGHNVERLE 406
G AG+NVER+E
Sbjct: 543 RSIGFAGNNVERIE 584
>gb|CF668112.1|CF668112 RTCNT1_34_A11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_34_A11_A029 5', mRNA sequence
Length = 763
Score = 291 bits (630), Expect = 4e-078
Identities = 117/138 (84%), Positives = 131/138 (94%)
Frame = +3 / +3
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 171 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 350
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLL 362
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+L
Sbjct: 351 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYIL 530
Query: 363 IGALGLLVITSKD*SVKL 416
IGALGLLVITSK+* + L
Sbjct: 531 IGALGLLVITSKE*RLSL 584
Score = 214 bits (461), Expect = 9e-055
Identities = 99/132 (75%), Positives = 107/132 (81%)
Frame = -3 / -1
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 568 SFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 389
Query: 220 KLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNP 41
LLSPLVR STS VS RS T ITR TIGISRPS KTTISP R+G+LLIC+N ISPLLNP
Sbjct: 388 *LLSPLVRTSTSPVSCRSCTFITR*TIGISRPST*KTTISPARMGALLICRNNISPLLNP 209
Query: 40 GSMLPERTTTTG 5
GSMLPE TTTTG
Sbjct: 208 GSMLPESTTTTG 173
Score = 144 bits (309), Expect = 8e-034
Identities = 63/134 (47%), Positives = 87/134 (64%)
Frame = -2 / -3
Query: 407 TLIFRRYDQQAQCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SV 228
+L FRRY QQ QC+ Q VL+ H NC+P NIW +S +H +MLL P L + I +
Sbjct: 575 SLFFRRYYQQTQCSYQNVLD*GLFGHKNCHPTNIW*KPNSAAHYMMLL*P*LTLSIQKPI 396
Query: 227 IPKIIVTFGEDVHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPF 48
I I++ F +D + S L+FM L ++ NF+ I++++N FS N F HMQKQ ITPF
Sbjct: 395 ISIIVIPFSKDFNLPSFLSFMYLYNTMNYRNFSTINMKDNNFSSTNGCFTHMQKQYITPF 216
Query: 47 KSRFHATRENHYNW 6
KSRFHAT +++YNW
Sbjct: 215 KSRFHAT*KHNYNW 174
>gb|DN463765.1|DN463765 EST959564 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJ295 5' end, mRNA sequence
Length = 804
Score = 291 bits (630), Expect = 4e-078
Identities = 117/138 (84%), Positives = 131/138 (94%)
Frame = +3 / +2
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 179 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 358
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLL 362
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+L
Sbjct: 359 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYIL 538
Query: 363 IGALGLLVITSKD*SVKL 416
IGALGLLVITSK+* + L
Sbjct: 539 IGALGLLVITSKE*RLSL 592
Score = 214 bits (461), Expect = 9e-055
Identities = 99/132 (75%), Positives = 107/132 (81%)
Frame = -3 / -1
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 576 SFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 397
Query: 220 KLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNP 41
LLSPLVR STS VS RS T ITR TIGISRPS KTTISP R+G+LLIC+N ISPLLNP
Sbjct: 396 *LLSPLVRTSTSPVSCRSCTFITR*TIGISRPST*KTTISPARMGALLICRNNISPLLNP 217
Query: 40 GSMLPERTTTTG 5
GSMLPE TTTTG
Sbjct: 216 GSMLPESTTTTG 181
Score = 146 bits (313), Expect = 2e-034
Identities = 64/134 (47%), Positives = 88/134 (65%)
Frame = -2 / -3
Query: 407 TLIFRRYDQQAQCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SV 228
+L FRRY QQ QC+ Q VL+ SH NC+P NIW +S +H +MLL P L + I +
Sbjct: 583 SLFFRRYYQQTQCSYQNVLD*GLFSHKNCHPTNIW*KPNSAAHYMMLL*P*LTLSIQKPI 404
Query: 227 IPKIIVTFGEDVHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPF 48
I I++ F +D + S L+FM L ++ NF+ I++++N FS N F HMQKQ ITPF
Sbjct: 403 ISIIVIPFSKDFNLPSFLSFMYLYNTMNYRNFSTINMKDNNFSSTNGCFTHMQKQYITPF 224
Query: 47 KSRFHATRENHYNW 6
KSRFHAT +++YNW
Sbjct: 223 KSRFHAT*KHNYNW 182
Score = 101 bits (216), Expect = 6e-021
Identities = 56/134 (41%), Positives = 75/134 (55%)
Frame = +2 / +1
Query: 5 TSCSGSLW*HGTWI*KG*YPVFAYEQRSYSHRRNSCFQYRWP*NSNCPPRN*GP*TSGHC 184
TSCS + *HGTWI*KG*Y V AYE ++S RN C W NS G *T+ +
Sbjct: 181 TSCSCAFR*HGTWI*KG*YIVSAYE*STHSCWRNCCLSC*WSRNSYSSSCYKGT*TTRNW 360
Query: 185 RSGHPHQR*Q*FWG*PTIICTWAALAPATSHYGTCCGLPSICWLDYNYHD*ETIY*VPAD 364
P+ R W * +C+ +A+A S+ G C + +ICWL N +D*+ + V +D
Sbjct: 361 GG*SPY*RG*QLWR**AFVCSRSAMATEASYNGPRCWVFTICWLGDNSYD*KALNQVHSD 540
Query: 365 WCTGLAGHNVERLE 406
G AG+NVER+E
Sbjct: 541 RSIGFAGNNVERIE 582
>gb|DR110673.1|DR110673 RTS1_12_F08.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_F08_A029 3', mRNA sequence
Length = 835
Score = 291 bits (630), Expect = 4e-078
Identities = 117/138 (84%), Positives = 131/138 (94%)
Frame = +3 / +1
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 25 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 204
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLL 362
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+L
Sbjct: 205 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYIL 384
Query: 363 IGALGLLVITSKD*SVKL 416
IGALGLLVITSK+* + L
Sbjct: 385 IGALGLLVITSKE*RLSL 438
Score = 214 bits (461), Expect = 9e-055
Identities = 99/132 (75%), Positives = 107/132 (81%)
Frame = -3 / -3
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 422 SFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 243
Query: 220 KLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNP 41
LLSPLVR STS VS RS T ITR TIGISRPS KTTISP R+G+LLIC+N ISPLLNP
Sbjct: 242 *LLSPLVRTSTSPVSCRSCTFITR*TIGISRPST*KTTISPARMGALLICRNNISPLLNP 63
Query: 40 GSMLPERTTTTG 5
GSMLPE TTTTG
Sbjct: 62 GSMLPESTTTTG 27
Score = 144 bits (309), Expect = 8e-034
Identities = 63/134 (47%), Positives = 87/134 (64%)
Frame = -2 / -2
Query: 407 TLIFRRYDQQAQCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SV 228
+L FRRY QQ QC+ Q VL+ H NC+P NIW +S +H +MLL P L + I +
Sbjct: 429 SLFFRRYYQQTQCSYQNVLD*GLFGHKNCHPTNIW*KPNSAAHYMMLL*P*LTLSIQKPI 250
Query: 227 IPKIIVTFGEDVHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPF 48
I I++ F +D + S L+FM L ++ NF+ I++++N FS N F HMQKQ ITPF
Sbjct: 249 ISIIVIPFSKDFNLPSFLSFMYLYNTMNYRNFSTINMKDNNFSSTNGCFTHMQKQYITPF 70
Query: 47 KSRFHATRENHYNW 6
KSRFHAT +++YNW
Sbjct: 69 KSRFHAT*KHNYNW 28
>gb|DT627323.1|DT627323 EST1160399 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAX38 5' end, mRNA sequence
Length = 692
Score = 291 bits (630), Expect = 4e-078
Identities = 117/138 (84%), Positives = 131/138 (94%)
Frame = +3 / +2
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 92 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 271
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLL 362
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+L
Sbjct: 272 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYIL 451
Query: 363 IGALGLLVITSKD*SVKL 416
IGALGLLVITSK+* + L
Sbjct: 452 IGALGLLVITSKE*RLSL 505
Score = 214 bits (461), Expect = 9e-055
Identities = 99/132 (75%), Positives = 107/132 (81%)
Frame = -3 / -3
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 489 SFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 310
Query: 220 KLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNP 41
LLSPLVR STS VS RS T ITR TIGISRPS KTTISP R+G+LLIC+N ISPLLNP
Sbjct: 309 *LLSPLVRTSTSPVSCRSCTFITR*TIGISRPST*KTTISPARMGALLICRNNISPLLNP 130
Query: 40 GSMLPERTTTTG 5
GSMLPE TTTTG
Sbjct: 129 GSMLPESTTTTG 94
Score = 146 bits (313), Expect = 2e-034
Identities = 64/134 (47%), Positives = 88/134 (65%)
Frame = -2 / -2
Query: 407 TLIFRRYDQQAQCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SV 228
+L FRRY QQ QC+ Q VL+ SH NC+P NIW +S +H +MLL P L + I +
Sbjct: 496 SLFFRRYYQQTQCSYQNVLD*GLFSHKNCHPTNIW*KPNSAAHYMMLL*P*LTLSIQKPI 317
Query: 227 IPKIIVTFGEDVHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPF 48
I I++ F +D + S L+FM L ++ NF+ I++++N FS N F HMQKQ ITPF
Sbjct: 316 ISIIVIPFSKDFNLPSFLSFMYLYNTMNYRNFSTINMKDNNFSSTNGCFTHMQKQYITPF 137
Query: 47 KSRFHATRENHYNW 6
KSRFHAT +++YNW
Sbjct: 136 KSRFHAT*KHNYNW 95
Score = 101 bits (216), Expect = 6e-021
Identities = 56/134 (41%), Positives = 75/134 (55%)
Frame = +2 / +1
Query: 5 TSCSGSLW*HGTWI*KG*YPVFAYEQRSYSHRRNSCFQYRWP*NSNCPPRN*GP*TSGHC 184
TSCS + *HGTWI*KG*Y V AYE ++S RN C W NS G *T+ +
Sbjct: 94 TSCSCAFR*HGTWI*KG*YIVSAYE*STHSCWRNCCLSC*WSRNSYSSSCYKGT*TTRNW 273
Query: 185 RSGHPHQR*Q*FWG*PTIICTWAALAPATSHYGTCCGLPSICWLDYNYHD*ETIY*VPAD 364
P+ R W * +C+ +A+A S+ G C + +ICWL N +D*+ + V +D
Sbjct: 274 GG*SPY*RG*QLWR**AFVCSRSAMATEASYNGPRCWVFTICWLGDNSYD*KALNQVHSD 453
Query: 365 WCTGLAGHNVERLE 406
G AG+NVER+E
Sbjct: 454 RSIGFAGNNVERIE 495
>gb|AW981614.1|AW981614 PC14F09 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC14F09, mRNA sequence
Length = 598
Score = 290 bits (627), Expect = 1e-077
Identities = 117/134 (87%), Positives = 129/134 (96%)
Frame = +3 / +2
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF+IDGREIPIVHRVIKVHERQ+T
Sbjct: 194 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHIDGREIPIVHRVIKVHERQET 373
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLL 362
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+L
Sbjct: 374 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYIL 553
Query: 363 IGALGLLVITSKD* 404
IGALGLLVITSK+*
Sbjct: 554 IGALGLLVITSKE* 595
Score = 216 bits (466), Expect = 2e-055
Identities = 100/132 (75%), Positives = 108/132 (81%)
Frame = -3 / -2
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 591 SFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 412
Query: 220 KLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNP 41
LLSPLVR STS VS RS T ITR TIGISRPSI KTTISP R+G+LLIC+N ISPLLNP
Sbjct: 411 *LLSPLVRTSTSPVSCRSCTFITR*TIGISRPSI*KTTISPARMGALLICRNNISPLLNP 232
Query: 40 GSMLPERTTTTG 5
GSMLPE TTTTG
Sbjct: 231 GSMLPESTTTTG 196
Score = 144 bits (309), Expect = 8e-034
Identities = 63/134 (47%), Positives = 87/134 (64%)
Frame = -2 / -1
Query: 407 TLIFRRYDQQAQCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SV 228
+L FRRY QQ QC+ Q VL+ H NC+P NIW +S +H +MLL P L + I +
Sbjct: 598 SLFFRRYYQQTQCSYQNVLD*GLFGHKNCHPTNIW*KPNSAAHYMMLL*P*LTLSIQKPI 419
Query: 227 IPKIIVTFGEDVHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPF 48
I I++ F +D + S L+FM L ++ NF+ I++++N FS N F HMQKQ ITPF
Sbjct: 418 ISIIVIPFSKDFNLPSFLSFMYLYNTMNYRNFSTINMKDNNFSSTNGCFTHMQKQYITPF 239
Query: 47 KSRFHATRENHYNW 6
KSRFHAT +++YNW
Sbjct: 238 KSRFHAT*KHNYNW 197
Score = 103 bits (220), Expect = 2e-021
Identities = 56/134 (41%), Positives = 75/134 (55%)
Frame = +2 / +1
Query: 5 TSCSGSLW*HGTWI*KG*YPVFAYEQRSYSHRRNSCFQYRWP*NSNCPPRN*GP*TSGHC 184
TSCS + *HGTWI*KG*Y V AYE ++S RN C Y W NS G *T+ +
Sbjct: 196 TSCSCAFR*HGTWI*KG*YIVSAYE*STHSCWRNCCLSY*WSRNSYSSSCYKGT*TTRNW 375
Query: 185 RSGHPHQR*Q*FWG*PTIICTWAALAPATSHYGTCCGLPSICWLDYNYHD*ETIY*VPAD 364
P+ R W * +C+ +A+A S+ G C + +ICWL N +D + + V +D
Sbjct: 376 GG*SPY*RG*QLWR**AFVCSRSAMATEASYNGPRCWVFTICWLGDNSYDRKALNQVHSD 555
Query: 365 WCTGLAGHNVERLE 406
G AG+NVER+E
Sbjct: 556 RSIGFAGNNVERIE 597
>gb|BX252375.1|BX252375 BX252375 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP063E10, mRNA sequence
Length = 690
Score = 290 bits (627), Expect = 1e-077
Identities = 116/138 (84%), Positives = 131/138 (94%)
Frame = +3 / +1
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 220 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 399
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLL 362
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+L
Sbjct: 400 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYIL 579
Query: 363 IGALGLLVITSKD*SVKL 416
IGALGLLVITSK+* + +
Sbjct: 580 IGALGLLVITSKE*RLSV 633
Score = 215 bits (463), Expect = 5e-055
Identities = 99/132 (75%), Positives = 107/132 (81%)
Frame = -3 / -2
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 617 SFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 438
Query: 220 KLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNP 41
LLSPLVR STS VS RS T ITR TIGISRPS KTTISP R+G+LLIC+N ISPLLNP
Sbjct: 437 *LLSPLVRTSTSPVSCRSCTFITR*TIGISRPSTWKTTISPARMGALLICRNNISPLLNP 258
Query: 40 GSMLPERTTTTG 5
GSMLPE TTTTG
Sbjct: 257 GSMLPESTTTTG 222
Score = 146 bits (314), Expect = 2e-034
Identities = 64/134 (47%), Positives = 87/134 (64%)
Frame = -2 / -1
Query: 407 TLIFRRYDQQAQCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SV 228
+L FRRY QQ QC+ Q VL+ H NC+PANIW +S +H +MLL P L + I +
Sbjct: 624 SLFFRRYYQQTQCSYQNVLD*GLFGHKNCHPANIW*KPNSAAHYMMLL*P*LTLSIQKPI 445
Query: 227 IPKIIVTFGEDVHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPF 48
I I++ F +D + S L+FM L ++ NF+ I++E+N FS N F HMQKQ I PF
Sbjct: 444 ISIIVIPFSKDFNLTSFLSFMYLYNTMNYRNFSTINMEDNNFSSTNGCFTHMQKQYIAPF 265
Query: 47 KSRFHATRENHYNW 6
KSRFHAT +++YNW
Sbjct: 264 KSRFHAT*KHNYNW 223
>gb|CF473592.1|CF473592 RTWW2_3_A05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_A05_A021 5', mRNA sequence
Length = 735
Score = 289 bits (626), Expect = 2e-077
Identities = 116/138 (84%), Positives = 130/138 (94%)
Frame = +3 / +2
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 170 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 349
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLL 362
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+L
Sbjct: 350 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYIL 529
Query: 363 IGALGLLVITSKD*SVKL 416
IG LGLLVITSK+* + L
Sbjct: 530 IGVLGLLVITSKE*RLSL 583
Score = 212 bits (457), Expect = 3e-054
Identities = 98/132 (74%), Positives = 106/132 (80%)
Frame = -3 / -1
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+ PI YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 567 SFDVITSKPNTPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 388
Query: 220 KLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNP 41
LLSPLVR STS VS RS T ITR TIGISRPS KTTISP R+G+LLIC+N ISPLLNP
Sbjct: 387 *LLSPLVRTSTSPVSCRSCTFITR*TIGISRPST*KTTISPARMGALLICRNNISPLLNP 208
Query: 40 GSMLPERTTTTG 5
GSMLPE TTTTG
Sbjct: 207 GSMLPESTTTTG 172
Score = 140 bits (301), Expect = 1e-032
Identities = 62/134 (46%), Positives = 86/134 (64%)
Frame = -2 / -3
Query: 407 TLIFRRYDQQAQCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SV 228
+L FRRY QQ Q + Q VL+ H NC+P NIW +S +H +MLL P L + I +
Sbjct: 574 SLFFRRYYQQTQYSYQNVLD*GLFGHKNCHPTNIW*KPNSAAHYMMLL*P*LTLSIQKPI 395
Query: 227 IPKIIVTFGEDVHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPF 48
I I++ F +D + S L+FM L ++ NF+ I++++N FS N F HMQKQ ITPF
Sbjct: 394 ISIIVIPFSKDFNLASFLSFMYLYNTMNYRNFSTINMKDNNFSSTNGCFTHMQKQYITPF 215
Query: 47 KSRFHATRENHYNW 6
KSRFHAT +++YNW
Sbjct: 214 KSRFHAT*KHNYNW 173
Score = 102 bits (218), Expect = 3e-021
Identities = 56/134 (41%), Positives = 75/134 (55%)
Frame = +2 / +1
Query: 5 TSCSGSLW*HGTWI*KG*YPVFAYEQRSYSHRRNSCFQYRWP*NSNCPPRN*GP*TSGHC 184
TSCS + *HGTWI*KG*Y V AYE ++S RN C W NS G *T+ +
Sbjct: 172 TSCSCAFR*HGTWI*KG*YIVSAYE*STHSCWRNCCLSC*WSRNSYSSSCYKGT*TTRNW 351
Query: 185 RSGHPHQR*Q*FWG*PTIICTWAALAPATSHYGTCCGLPSICWLDYNYHD*ETIY*VPAD 364
R P+ R W * +C+ +A+A S+ G C + +ICWL N +D + + V +D
Sbjct: 352 RG*SPY*RG*QLWR**AFVCSRSAMATEASYNGPRCWVFTICWLGDNSYDRKALNQVHSD 531
Query: 365 WCTGLAGHNVERLE 406
G AG+NVER+E
Sbjct: 532 RSIGFAGNNVERIE 573
>gb|BX680840.1|BX680840 BX680840 RS Pinus pinaster cDNA clone RS49D1, mRNA sequence
Length = 567
Score = 274 bits (593), Expect = 5e-073
Identities = 108/125 (86%), Positives = 120/125 (96%)
Frame = +3 / +1
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 193 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 372
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLL 362
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+L
Sbjct: 373 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYIL 552
Query: 363 IGALG 377
IGALG
Sbjct: 553 IGALG 567
Score = 199 bits (428), Expect = 3e-050
Identities = 92/124 (74%), Positives = 99/124 (79%)
Frame = -3 / -2
Query: 376 PSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSPKLLSPLVR 197
P+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP LLSPLVR
Sbjct: 566 PNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP*LLSPLVR 387
Query: 196 MSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNPGSMLPERT 17
STS VS RS T ITR TIGISRPS KTTISP R+G+LLIC+N ISPLLNPGSMLPE T
Sbjct: 386 TSTSPVSCRSCTFITR*TIGISRPSTWKTTISPARMGALLICRNNISPLLNPGSMLPEST 207
Query: 16 TTTG 5
TTTG
Sbjct: 206 TTTG 195
Score = 130 bits (279), Expect = 1e-029
Identities = 57/123 (46%), Positives = 79/123 (64%)
Frame = -2 / -1
Query: 374 QCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SVIPKIIVTFGED 195
QC+ Q VL+ H NC+PANIW +S +H +MLL P L + I +I I++ F +D
Sbjct: 564 QCSYQNVLD*GLFGHKNCHPANIW*KPNSAAHYMMLL*P*LTLSIQKPIISIIVIPFSKD 385
Query: 194 VHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPFKSRFHATRENH 15
+ S L+FM L ++ NF+ I++E+N FS N F HMQKQ I PFKSRFHAT +++
Sbjct: 384 FNLTSFLSFMYLYNTMNYRNFSTINMEDNNFSSTNGCFTHMQKQYIAPFKSRFHAT*KHN 205
Query: 14 YNW 6
YNW
Sbjct: 204 YNW 196
>gb|DR681750.1|DR681750 EST1071825 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA101 3' end, mRNA sequence
Length = 549
Score = 253 bits (546), Expect = 2e-066
Identities = 99/116 (85%), Positives = 110/116 (94%)
Frame = +3 / +2
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 200 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 379
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFI 350
EV++LTKGDNN+GDDRLLYA GQLWL +HHIMGRAVG+LPYVGW+TI+MTEKP I
Sbjct: 380 GEVEVLTKGDNNYGDDRLLYAQGQLWLHKHHIMGRAVGFLPYVGWVTILMTEKPLI 547
Score = 185 bits (399), Expect = 3e-046
Identities = 87/116 (75%), Positives = 93/116 (80%)
Frame = -3 / -1
Query: 352 LINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSPKLLSPLVRMSTSAVS* 173
LI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP LLSPLVR STS VS
Sbjct: 549 LIKGFSVIRIVTQPTYGKNPTARPII*CLCSHS*P*AYKSLSSP*LLSPLVRTSTSPVSC 370
Query: 172 RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRISPLLNPGSMLPERTTTTG 5
RS T ITR TIGISRPS KTTISP R+G+LLIC+N ISPLLNPGSMLPE TTTTG
Sbjct: 369 RSCTFITR*TIGISRPST*KTTISPARMGALLICRNNISPLLNPGSMLPESTTTTG 202
Score = 119 bits (255), Expect = 2e-026
Identities = 51/110 (46%), Positives = 73/110 (66%)
Frame = -2 / -3
Query: 335 SHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SVIPKIIVTFGEDVHFCSVLTFMDLN 156
SH NC+P NIW +S +H +ML+ P L + I +I I++ F +D + S L+FM L
Sbjct: 532 SHKNCHPTNIW*KPNSAAHYMMLM*P*LTLSIQKPIISIIVIPFSKDFNLPSFLSFMYLY 353
Query: 155 YAVDNWNFTAIDIENNYFSCANRIFAHMQKQDITPFKSRFHATRENHYNW 6
++ NF+ I++++N FS N F HMQKQ ITPFKSRFHAT +++YNW
Sbjct: 352 NTMNYRNFSTINMKDNNFSSTNGCFTHMQKQYITPFKSRFHAT*KHNYNW 203
>gb|DR683136.1|DR683136 EST1073212 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAE63, mRNA sequence
Length = 524
Score = 247 bits (533), Expect = 1e-064
Identities = 98/118 (83%), Positives = 111/118 (94%)
Frame = +3 / -2
Query: 63 LFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDTAEVDILTKGDNNFGDDRLLY 242
LFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T EV++LTKGDNN+GDDRLLY
Sbjct: 523 LFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQETGEVEVLTKGDNNYGDDRLLY 344
Query: 243 AHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLLIGALGLLVITSKD*SVKL 416
A GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+LIGALGLLVITSK+* + L
Sbjct: 343 AQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYILIGALGLLVITSKE*RLSL 170
Score = 171 bits (369), Expect = 4e-042
Identities = 81/112 (72%), Positives = 89/112 (79%)
Frame = -3 / +3
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 186 SFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 365
Query: 220 KLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKN 65
LLSPLVR STS VS RS T ITR TIGISRPS KTTISP R+G+LLIC+N
Sbjct: 366 *LLSPLVRTSTSPVSCRSCTFITR*TIGISRPST*KTTISPARMGALLICRN 521
Score = 110 bits (234), Expect = 2e-023
Identities = 50/115 (43%), Positives = 71/115 (61%)
Frame = -2 / +2
Query: 407 TLIFRRYDQQAQCTNQQVLNKWFLSHDNCNPANIWKVAHSTSHNVMLLEPKLPMCI**SV 228
+L FRRY QQ QC+ Q VL+ SH NC+P NIW +S +H +MLL P L + I +
Sbjct: 179 SLFFRRYYQQTQCSYQNVLD*GLFSHKNCHPTNIW*KPNSAAHYMMLL*P*LTLSIQKPI 358
Query: 227 IPKIIVTFGEDVHFCSVLTFMDLNYAVDNWNFTAIDIENNYFSCANRIFAHMQKQ 63
I I++ F +D + S L+FM L ++ NF+ I++++N FS N F HMQKQ
Sbjct: 359 ISIIVIPFSKDFNLPSFLSFMYLYNTMNYRNFSTINMKDNNFSSTNGCFTHMQKQ 523
>gb|CF389415.1|CF389415 RTDR2_7_A04.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_A04_A021 3', mRNA
sequence
Length = 666
Score = 232 bits (502), Expect = 2e-060
Identities = 92/109 (84%), Positives = 104/109 (95%)
Frame = +3 / +2
Query: 78 SKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDTAEVDILTKGDNNFGDDRLLYAHGQL 257
SK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T EV++LTKGDNN+GDDRLLYA GQL
Sbjct: 2 SKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQETGEVEVLTKGDNNYGDDRLLYAQGQL 181
Query: 258 WLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLLIGALGLLVITSKD* 404
WLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+LIGALGLLVITSK+*
Sbjct: 182 WLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYILIGALGLLVITSKE* 328
Score = 163 bits (350), Expect = 2e-039
Identities = 80/114 (70%), Positives = 88/114 (77%)
Frame = -3 / -1
Query: 418 RSLTL*SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAY 239
R+ L SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY
Sbjct: 342 RNDNLYSFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AY 163
Query: 238 NSRSSPKLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLL 77
S SSP LLSPLVR STS VS RS T ITR TIGISRPS KTTISP R+G+LL
Sbjct: 162 KSLSSP*LLSPLVRTSTSPVSCRSCTFITR*TIGISRPST*KTTISPARMGALL 1
>gb|DT637807.1|DT637807 EST1152738 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH774 3' end, mRNA sequence
Length = 727
Score = 149 bits (320), Expect(2) = 8e-060
Identities = 59/76 (77%), Positives = 70/76 (92%)
Frame = +3 / +1
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+P+VVVLSGSMEPGF+RGDILFLHMSK PIR GEIVVF+++G++IPIVHRVIKVHER DT
Sbjct: 226 SPIVVVLSGSMEPGFQRGDILFLHMSKAPIRAGEIVVFHVEGKDIPIVHRVIKVHERHDT 405
Query: 183 AEVDILTKGDNNFGDD 230
E+D+LTKGD+N DD
Sbjct: 406 KEIDVLTKGDDNEVDD 453
Score = 113 bits (242), Expect(2) = 9e-041
Identities = 55/77 (71%), Positives = 58/77 (75%)
Frame = -3 / -3
Query: 235 SRSSPKLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRIS 56
S SS L SPLVR S S VS RS TLITR TIGIS PS TTISP RIG+LLIC+N +S
Sbjct: 458 SSSSTSLSSPLVRTSISFVSWRSCTLITR*TIGISLPST*NTTISPARIGALLICRNNMS 279
Query: 55 PLLNPGSMLPERTTTTG 5
PL NPGSMLPE TTT G
Sbjct: 278 PL*NPGSMLPESTTTIG 228
Score = 101 bits (216), Expect(2) = 8e-060
Identities = 41/61 (67%), Positives = 48/61 (78%)
Frame = +3 / +1
Query: 225 DDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLLIGALGLLVITSKD* 404
D+ +YA Q WLQQ + GR VG+LPY GW+TIIMTE P IKY+LIGALGLLVI SK+*
Sbjct: 454 DEGGIYADDQQWLQQQDVAGRIVGFLPYAGWVTIIMTENPIIKYILIGALGLLVIASKE* 633
Query: 405 S 407
S
Sbjct: 634 S 636
Score = 73.9 bits (155), Expect(2) = 9e-041
Identities = 32/59 (54%), Positives = 39/59 (66%)
Frame = -3 / -3
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSS 224
S D +TSKP+AP+S YL+ GFSVM+IV QP YG+ PT RP CC + AY SS
Sbjct: 629 SLDAITSKPNAPMSMYLMMGFSVMMIVTQPAYGKNPTMRPATSCCCNHC*SSAYMPPSS 453
>gb|DR692633.1|DR692633 EST1082721 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADO48 3' end, mRNA sequence
Length = 678
Score = 149 bits (320), Expect(2) = 8e-060
Identities = 59/76 (77%), Positives = 70/76 (92%)
Frame = +3 / +2
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+P+VVVLSGSMEPGF+RGDILFLHMSK PIR GEIVVF+++G++IPIVHRVIKVHER DT
Sbjct: 218 SPIVVVLSGSMEPGFQRGDILFLHMSKAPIRAGEIVVFHVEGKDIPIVHRVIKVHERHDT 397
Query: 183 AEVDILTKGDNNFGDD 230
E+D+LTKGD+N DD
Sbjct: 398 KEIDVLTKGDDNEVDD 445
Score = 113 bits (242), Expect(2) = 9e-041
Identities = 55/77 (71%), Positives = 58/77 (75%)
Frame = -3 / -1
Query: 235 SRSSPKLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSILKTTISPVRIGSLLICKNRIS 56
S SS L SPLVR S S VS RS TLITR TIGIS PS TTISP RIG+LLIC+N +S
Sbjct: 450 SSSSTSLSSPLVRTSISFVSWRSCTLITR*TIGISLPST*NTTISPARIGALLICRNNMS 271
Query: 55 PLLNPGSMLPERTTTTG 5
PL NPGSMLPE TTT G
Sbjct: 270 PL*NPGSMLPESTTTIG 220
Score = 101 bits (216), Expect(2) = 8e-060
Identities = 41/61 (67%), Positives = 48/61 (78%)
Frame = +3 / +2
Query: 225 DDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLLIGALGLLVITSKD* 404
D+ +YA Q WLQQ + GR VG+LPY GW+TIIMTE P IKY+LIGALGLLVI SK+*
Sbjct: 446 DEGGIYADDQQWLQQQDVAGRIVGFLPYAGWVTIIMTENPIIKYILIGALGLLVIASKE* 625
Query: 405 S 407
S
Sbjct: 626 S 628
Score = 73.9 bits (155), Expect(2) = 9e-041
Identities = 32/59 (54%), Positives = 39/59 (66%)
Frame = -3 / -1
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSS 224
S D +TSKP+AP+S YL+ GFSVM+IV QP YG+ PT RP CC + AY SS
Sbjct: 621 SLDAITSKPNAPMSMYLMMGFSVMMIVTQPAYGKNPTMRPATSCCCNHC*SSAYMPPSS 445
>gb|AW043371.1|AW043371 ST32E12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST32E12, mRNA sequence
Length = 601
Score = 218 bits (471), Expect = 4e-056
Identities = 87/100 (87%), Positives = 96/100 (96%)
Frame = +3 / +3
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHERQDT 182
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHRVIKVHERQ+T
Sbjct: 201 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHRVIKVHERQET 380
Query: 183 AEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYL 302
EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+L
Sbjct: 381 GEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFL 500
Score = 157 bits (337), Expect = 1e-037
Identities = 74/97 (76%), Positives = 78/97 (80%)
Frame = -3 / -1
Query: 295 PTARPIM*CCWSQSCPCAYNSRSSPKLLSPLVRMSTSAVS*RSWTLITRWTIGISRPSIL 116
PTARPI+*C S S P AY S SSP LLSPLVR STS VS RS T ITR TIGISRPS
Sbjct: 493 PTARPII*CFCSHS*P*AYKSLSSP*LLSPLVRTSTSPVSCRSCTFITR*TIGISRPST* 314
Query: 115 KTTISPVRIGSLLICKNRISPLLNPGSMLPERTTTTG 5
KTTISP R+G+LLIC+N ISPLLNPGSMLPE TTTTG
Sbjct: 313 KTTISPARMGALLICRNNISPLLNPGSMLPESTTTTG 203
>gb|DR683137.1|DR683137 EST1073213 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAE63 3' end, mRNA sequence
Length = 487
Score = 186 bits (401), Expect = 2e-046
Identities = 73/89 (82%), Positives = 84/89 (94%)
Frame = +3 / +2
Query: 150 RVIKVHERQDTAEVDILTKGDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITII 329
RVIKVHERQ+T EV++LTKGDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+
Sbjct: 2 RVIKVHERQETGEVEVLTKGDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTIL 181
Query: 330 MTEKPFIKYLLIGALGLLVITSKD*SVKL 416
MTEKP IKY+LIGALGLLVITSK+* + L
Sbjct: 182 MTEKPLIKYILIGALGLLVITSKE*RLSL 268
Score = 125 bits (267), Expect = 5e-028
Identities = 60/84 (71%), Positives = 65/84 (77%)
Frame = -3 / -2
Query: 400 SFDVMTSKPSAPISRYLINGFSVMIIVIQPTYGR*PTARPIM*CCWSQSCPCAYNSRSSP 221
SFDV+TSKP+API YLI GFSV+ IV QPTYG+ PTARPI+*C S S P AY S SSP
Sbjct: 252 SFDVITSKPNAPIRMYLIKGFSVIRIVTQPTYGKNPTARPII*CFCSHS*P*AYKSLSSP 73
Query: 220 KLLSPLVRMSTSAVS*RSWTLITR 149
LLSPLVR STS VS RS T ITR
Sbjct: 72 *LLSPLVRTSTSPVSCRSCTFITR 1
>gb|AW438035.1|AW438035 ST83G04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST83G04, mRNA sequence
Length = 418
Score = 149 bits (321), Expect = 2e-035
Identities = 58/70 (82%), Positives = 66/70 (94%)
Frame = +3 / +1
Query: 207 GDNNFGDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLLIGALGLLV 386
GDNN+GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+LIGALGLLV
Sbjct: 1 GDNNYGDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYILIGALGLLV 180
Query: 387 ITSKD*SVKL 416
ITSK+* + L
Sbjct: 181 ITSKE*RLSL 210
>gb|BI397852.1|BI397852 NXPV_108_E04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_108_E04 5' similar to Arabidopsis
thaliana sequence At3g15710 putative signal peptidase
21kDa subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 437
Score = 103 bits (220), Expect(2) = 3e-033
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3 / +3
Query: 225 DDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLLIGALGLLVITSKD* 404
D+ +YA Q WLQQ + GR VG+LPYVGW+TIIMTE P IKY+LIGALGLLVI SK+*
Sbjct: 93 DEGGIYADDQQWLQQQDVAGRIVGFLPYVGWVTIIMTENPIIKYILIGALGLLVIASKE* 272
Query: 405 S 407
S
Sbjct: 273 S 275
Score = 58.8 bits (122), Expect(2) = 3e-033
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +3 / +3
Query: 141 IVHRVIKVHERQDTAEVDILTKGDNNFGDD 230
IVHRVIKVHER DT E+D+LTKGD+N DD
Sbjct: 3 IVHRVIKVHERHDTKEIDVLTKGDDNEVDD 92
>gb|BM367466.1|BM367466 NXLV_049_F07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_049_F07 5' similar to Arabidopsis thaliana
sequence At1g52600 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 425
Score = 137 bits (294), Expect = 1e-031
Identities = 54/65 (83%), Positives = 61/65 (93%)
Frame = +3 / +3
Query: 222 GDDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLLIGALGLLVITSKD 401
GDDRLLYA GQLWLQ+HHIMGRAVG+LPYVGW+TI+MTEKP IKY+LIGALGLLVITSK+
Sbjct: 18 GDDRLLYAQGQLWLQKHHIMGRAVGFLPYVGWVTILMTEKPLIKYILIGALGLLVITSKE 197
Query: 402 *SVKL 416
* + L
Sbjct: 198 *RLSL 212
>gb|DR113052.1|DR113052 RTS1_32_D10.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_32_D10_A029 5', mRNA sequence
Length = 309
Score = 110 bits (234), Expect = 2e-023
Identities = 45/50 (90%), Positives = 48/50 (96%)
Frame = +3 / +3
Query: 3 APVVVVLSGSMEPGFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHR 152
+PVVVVLSGSMEPGFKRGDILFLHMSK PIR GEIVVF++DGREIPIVHR
Sbjct: 159 SPVVVVLSGSMEPGFKRGDILFLHMSKAPIRAGEIVVFHVDGREIPIVHR 308
>gb|CX649415.1|CX649415 COLD1_35_D06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_35_D06_A029 3', mRNA sequence
Length = 732
Score = 103 bits (220), Expect = 2e-021
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = +3 / +2
Query: 225 DDRLLYAHGQLWLQQHHIMGRAVGYLPYVGWITIIMTEKPFIKYLLIGALGLLVITSKD* 404
D+ +YA Q WLQQ + GR VG+LPYVGW+TIIMTE P IKY+LIGALGLLVI SK+*
Sbjct: 17 DEGGIYADDQQWLQQQDVAGRIVGFLPYVGWVTIIMTENPIIKYILIGALGLLVIASKE* 196
Query: 405 S 407
S
Sbjct: 197 S 199
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 507,962,912
Number of Sequences: 355925
Number of extensions: 7775922
Number of successful extensions: 42405
Number of sequences better than 1.0e-020: 25
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12778481865
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)