TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550113.2.1
(803 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX712435.1|CX712435 RTPQ1_2_B07.g2_A032 Roots treated wi... 220 9e-058
gb|DR021458.1|DR021458 STRS1_44_F12.g1_A034 Shoot tip pitch... 220 9e-058
gb|CO158538.1|CO158538 FLD1_7_C05.g1_A029 Root flooded Pinu... 220 2e-057
gb|CV035135.1|CV035135 RTNACL1_13_G07.g1_A029 Roots plus ad... 218 5e-056
gb|CV036384.1|CV036384 RTNACL1_58_H09.g1_A029 Roots plus ad... 218 5e-056
gb|CX651289.1|CX651289 COLD1_51_H09.b1_A029 Root cold Pinus... 218 5e-056
gb|CX651369.1|CX651369 COLD1_51_H09.g1_A029 Root cold Pinus... 218 5e-056
gb|AW042692.1|AW042692 ST23D06 Pine TriplEx shoot tip libra... 216 2e-055
gb|AW290179.1|AW290179 NXNV015A05F Nsf Xylem Normal wood Ve... 216 2e-055
gb|AW982027.1|AW982027 PC23A03 Pine TriplEx pollen cone lib... 216 2e-055
gb|AL750317.1|AL750317 AL750317 RN Pinus pinaster cDNA clon... 216 2e-055
gb|BX249526.1|BX249526 BX249526 Pinus pinaster differenciat... 216 2e-055
gb|BX250231.1|BX250231 BX250231 Pinus pinaster differenciat... 216 2e-055
gb|BX252257.1|BX252257 BX252257 Pinus pinaster differenciat... 216 2e-055
gb|BX252258.1|BX252258 BX252258 Pinus pinaster differenciat... 216 2e-055
gb|BX253440.1|BX253440 BX253440 Pinus pinaster differenciat... 216 2e-055
gb|BE496395.1|BE496395 NXCI_017_D01_F NXCI (Nsf Xylem Compr... 216 2e-055
gb|BF010485.1|BF010485 NXCI_084_E08_F NXCI (Nsf Xylem Compr... 216 2e-055
gb|BF609105.1|BF609105 NXSI_040_D10_F NXSI (Nsf Xylem Side ... 216 2e-055
gb|BQ699020.1|BQ699020 NXRV118_D10_F NXRV (Nsf Xylem Root w... 216 2e-055
gb|BQ699236.1|BQ699236 NXRV121_B09_F NXRV (Nsf Xylem Root w... 216 2e-055
gb|BQ700831.1|BQ700831 NXRV112_A06_F NXRV (Nsf Xylem Root w... 216 2e-055
gb|CD026825.1|CD026825 NXNV015A05 Nsf Xylem Normal wood Ver... 216 2e-055
gb|CF395922.1|CF395922 RTDS2_19_G07.g1_A021 Drought-stresse... 216 2e-055
gb|CF470303.1|CF470303 RTDS1_18_D01.g1_A015 Drought-stresse... 216 2e-055
gb|CF471664.1|CF471664 RTDS1_6_G10.b1_A015 Drought-stressed... 216 2e-055
gb|CO165995.1|CO165995 FLD1_58_C11.g1_A029 Root flooded Pin... 216 2e-055
gb|CX648845.1|CX648845 COLD1_31_G04.b1_A029 Root cold Pinus... 216 2e-055
gb|CX648922.1|CX648922 COLD1_31_G04.g1_A029 Root cold Pinus... 216 2e-055
gb|CX715540.1|CX715540 RTPQ1_34_G10.g1_A032 Roots treated w... 216 2e-055
gb|DR088564.1|DR088564 RTAL1_2_F09.g1_A029 Roots plus added... 216 2e-055
gb|DR167170.1|DR167170 RTPHOS1_17_D09.b1_A029 Roots minus p... 216 2e-055
gb|BG040349.1|BG040349 NXSI_107_C07_F NXSI (Nsf Xylem Side ... 215 3e-055
gb|CF392690.1|CF392690 RTDR3_5_E02.g1_A022 Loblolly pine ro... 215 3e-055
gb|BX676882.1|BX676882 BX676882 RN Pinus pinaster cDNA clon... 215 3e-055
gb|BX682720.1|BX682720 BX682720 Pinus pinaster differenciat... 215 3e-055
gb|CO361147.1|CO361147 NDL2_3_C03.b1_A029 Needles control 2... 215 3e-055
gb|CX646462.1|CX646462 COLD1_9_B07.g1_A029 Root cold Pinus ... 215 3e-055
gb|DR744690.1|DR744690 RTCU1_24_E12.b1_A029 Roots plus adde... 215 3e-055
gb|DR745218.1|DR745218 RTCU1_27_H05.g1_A029 Roots plus adde... 215 3e-055
gb|BE643823.1|BE643823 NXCI_047_F11_F NXCI (Nsf Xylem Compr... 213 2e-054
gb|BF518220.1|BF518220 NXSI_036_E04_F NXSI (Nsf Xylem Side ... 212 2e-054
gb|BE209319.1|BE209319 NXNV_166_C12_F Nsf Xylem Normal wood... 211 4e-054
gb|CF470550.1|CF470550 RTDS1_13_E11.b1_A015 Drought-stresse... 211 4e-054
gb|CF470616.1|CF470616 RTDS1_13_E11.g1_A015 Drought-stresse... 211 4e-054
gb|CV035055.1|CV035055 RTNACL1_13_G07.b1_A029 Roots plus ad... 211 5e-054
gb|DR744762.1|DR744762 RTCU1_24_E12.g1_A029 Roots plus adde... 210 1e-053
gb|BE496610.1|BE496610 NXCI_021_G01_F NXCI (Nsf Xylem Compr... 210 1e-053
gb|BQ697224.1|BQ697224 NXPV_051_A06_F NXPV (Nsf Xylem Plani... 207 7e-053
gb|BG040040.1|BG040040 NXSI_105_H03_F NXSI (Nsf Xylem Side ... 205 2e-052
gb|BE209328.1|BE209328 NXNV_166_D11_F Nsf Xylem Normal wood... 203 2e-051
gb|BG317448.1|BG317448 NXPV_001_H10_F NXPV (Nsf Xylem Plani... 199 2e-050
gb|BE452008.1|BE452008 NXCI_007_C12_F NXCI (Nsf Xylem Compr... 193 1e-048
gb|BQ697040.1|BQ697040 NXPV_048_E08_F NXPV (Nsf Xylem Plani... 193 1e-048
gb|AW289731.1|AW289731 NXNV005H09F Nsf Xylem Normal wood Ve... 191 5e-048
gb|BF610330.1|BF610330 NXSI_057_H08_F NXSI (Nsf Xylem Side ... 191 5e-048
gb|CD028348.1|CD028348 NXNV005H09 Nsf Xylem Normal wood Ver... 191 5e-048
gb|BX681771.1|BX681771 BX681771 RS Pinus pinaster cDNA clon... 186 2e-046
gb|DR016754.1|DR016754 STRS1_12_A09.b1_A034 Shoot tip pitch... 185 4e-046
gb|CF665886.1|CF665886 RTCNT1_19_F01.b1_A029 Root control P... 178 2e-045
gb|BE187400.1|BE187400 NXNV_163_E06_F Nsf Xylem Normal wood... 182 2e-045
gb|AW758637.1|AW758637 NXNV_084_E03_F Nsf Xylem Normal wood... 182 4e-045
gb|DR388591.1|DR388591 RTHG1_29_F03.b1_A029 Roots plus adde... 178 5e-045
gb|CR392712.1|CR392712 CR392712 RN Pinus pinaster cDNA clon... 181 5e-045
gb|DR745149.1|DR745149 RTCU1_27_H05.b1_A029 Roots plus adde... 177 1e-043
gb|AW226048.1|AW226048 ST76G04 Pine TriplEx shoot tip libra... 175 4e-043
gb|DR016831.1|DR016831 STRS1_12_A09.g1_A034 Shoot tip pitch... 171 4e-042
gb|AL750318.1|AL750318 AL750318 RN Pinus pinaster cDNA clon... 170 1e-041
gb|AW289956.1|AW289956 NXNV008B09F Nsf Xylem Normal wood Ve... 168 4e-041
gb|CD026597.1|CD026597 NXNV008B09 Nsf Xylem Normal wood Ver... 168 4e-041
gb|CF395863.1|CF395863 RTDS2_19_G07.b1_A021 Drought-stresse... 160 1e-038
gb|BM367137.1|BM367137 NXLV_045_B03_F NXLV (Nsf Xylem Late ... 159 2e-038
gb|BQ197456.1|BQ197456 NXLV114_F05_F NXLV (Nsf Xylem Late w... 157 7e-038
gb|BF777173.1|BF777173 NXSI_066_C03_F NXSI (Nsf Xylem Side ... 144 7e-034
gb|BG275457.1|BG275457 NXSI_139_A08_F NXSI (Nsf Xylem Side ... 144 7e-034
gb|BX254650.1|BX254650 BX254650 Pinus pinaster differenciat... 143 2e-033
gb|CF470225.1|CF470225 RTDS1_18_D01.b1_A015 Drought-stresse... 143 2e-033
gb|DN626735.1|DN626735 EST977551 Subtracted pine embryo lib... 137 1e-031
gb|DN632945.1|DN632945 EST983761 Subtracted pine embryo lib... 137 1e-031
gb|DN614818.1|DN614818 EST967868 Subtracted pine embryo lib... 135 3e-031
gb|DT629098.1|DT629098 EST1155668 Subtracted pine embryo li... 135 3e-031
gb|BG275322.1|BG275322 NXSI_142_C03_F NXSI (Nsf Xylem Side ... 133 1e-030
gb|AW754712.1|AW754712 PC05E08 Pine TriplEx pollen cone lib... 92 6e-029
gb|CD021794.1|CD021794 NXNV_139_D08_F Nsf Xylem Normal wood... 125 5e-028
gb|BX681218.1|BX681218 BX681218 RS Pinus pinaster cDNA clon... 120 2e-026
gb|CO158463.1|CO158463 FLD1_7_C05.b1_A029 Root flooded Pinu... 115 4e-026
gb|BF777917.1|BF777917 NXSI_078_F03_F NXSI (Nsf Xylem Side ... 116 3e-025
gb|AW043347.1|AW043347 ST32C07 Pine TriplEx shoot tip libra... 115 5e-025
gb|AW290696.1|AW290696 NXNV045E03F Nsf Xylem Normal wood Ve... 109 2e-023
gb|CD027358.1|CD027358 NXNV045E03 Nsf Xylem Normal wood Ver... 109 2e-023
>gb|CX712435.1|CX712435 RTPQ1_2_B07.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_2_B07_A032 5', mRNA sequence
Length = 764
Score = 220 bits (474), Expect(2) = 9e-058
Identities = 90/101 (89%), Positives = 97/101 (96%)
Frame = -2 / +1
Query: 700 GKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLR 521
G+MVQRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLR
Sbjct: 115 GEMVQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLR 294
Query: 520 PAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
PAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 295 PAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 417
Score = 172 bits (371), Expect = 2e-042
Identities = 73/101 (72%), Positives = 78/101 (77%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL FC F TFLTIFCSST+ A +I S TA PD TPP* TVLRFL +LDLLYSAGLRWG
Sbjct: 461 SLDFCIFKTFLTIFCSSTKNALIIRSRTAEPDKTPP*ALLTVLRFLLSLDLLYSAGLRWG 282
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+P I PVTGHLGPLALF WY +LPPGV T VWLDFVA
Sbjct: 281 IP*ILLPVTGHLGPLALFFAVWYINLPPGVFKTLVWLDFVA 159
Score = 24.4 bits (47), Expect(2) = 9e-058
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1 / +3
Query: 407 G*RAEDCQEGVE 372
G R EDCQEG E
Sbjct: 408 GRRTEDCQEGFE 443
>gb|DR021458.1|DR021458 STRS1_44_F12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_44_F12_A034 5', mRNA sequence
Length = 691
Score = 220 bits (474), Expect(2) = 9e-058
Identities = 90/101 (89%), Positives = 97/101 (96%)
Frame = -2 / +1
Query: 700 GKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLR 521
G+MVQRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLR
Sbjct: 55 GEMVQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLR 234
Query: 520 PAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
PAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 235 PAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 357
Score = 158 bits (340), Expect = 4e-038
Identities = 70/101 (69%), Positives = 75/101 (74%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ A +I S TA PD TPP* TVL FL +LDLLYSAGLRWG
Sbjct: 401 SLDF*IFKTFLTIFCSSTKNALIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSAGLRWG 222
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+P I PVTGHLGPLALF W +LPPGV T VWLDFVA
Sbjct: 221 IP*ILLPVTGHLGPLALFFAVW*INLPPGVFKTLVWLDFVA 99
Score = 24.4 bits (47), Expect(2) = 9e-058
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1 / +3
Query: 407 G*RAEDCQEGVE 372
G R EDCQEG E
Sbjct: 348 GGRTEDCQEGFE 383
>gb|CO158538.1|CO158538 FLD1_7_C05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_C05_A029 5', mRNA sequence
Length = 731
Score = 220 bits (474), Expect(2) = 2e-057
Identities = 90/101 (89%), Positives = 97/101 (96%)
Frame = -2 / +1
Query: 700 GKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLR 521
G+MVQRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLR
Sbjct: 151 GEMVQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLR 330
Query: 520 PAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
PAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 331 PAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 453
Score = 161 bits (346), Expect = 6e-039
Identities = 71/101 (70%), Positives = 76/101 (75%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ A +I S TA PD TPP* TVL FL +LDLLYSAGLRWG
Sbjct: 497 SLDF*IFKTFLTIFCSSTKNALIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSAGLRWG 318
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+P I FPVTGHLGPLALF W +LPPGV T VWLDFVA
Sbjct: 317 IP*ILFPVTGHLGPLALFFAVW*INLPPGVFKTLVWLDFVA 195
Score = 23.1 bits (44), Expect(2) = 2e-057
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1 / +3
Query: 407 G*RAEDCQEGVEITEDQ 357
G R EDCQEG + ++ Q
Sbjct: 444 GGRTEDCQEGFKDSKVQ 494
>gb|CV035135.1|CV035135 RTNACL1_13_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_G07_A029 5', mRNA sequence
Length = 710
Score = 218 bits (470), Expect = 5e-056
Identities = 92/113 (81%), Positives = 101/113 (89%)
Frame = -2 / +1
Query: 736 R*GLSTGGARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPV 557
R L++ GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPV
Sbjct: 34 RESLASCGAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPV 213
Query: 556 TGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
TGK+I GIPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 214 TGKRIHGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 372
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 416 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 237
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 236 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 114
>gb|CV036384.1|CV036384 RTNACL1_58_H09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_58_H09_A029 5', mRNA sequence
Length = 620
Score = 218 bits (470), Expect = 5e-056
Identities = 92/113 (81%), Positives = 101/113 (89%)
Frame = -2 / +2
Query: 736 R*GLSTGGARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPV 557
R L++ GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPV
Sbjct: 74 RESLASCGAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPV 253
Query: 556 TGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
TGK+I GIPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 254 TGKRIHGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 412
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 456 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 277
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 276 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 154
>gb|CX651289.1|CX651289 COLD1_51_H09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_51_H09_A029 3', mRNA sequence
Length = 699
Score = 218 bits (470), Expect = 5e-056
Identities = 92/113 (81%), Positives = 101/113 (89%)
Frame = -2 / +2
Query: 736 R*GLSTGGARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPV 557
R L++ GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPV
Sbjct: 32 RESLASCGAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPV 211
Query: 556 TGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
TGK+I GIPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 212 TGKRIHGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 370
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 414 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 235
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 234 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 112
>gb|CX651369.1|CX651369 COLD1_51_H09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_51_H09_A029 5', mRNA sequence
Length = 604
Score = 218 bits (470), Expect = 5e-056
Identities = 92/113 (81%), Positives = 101/113 (89%)
Frame = -2 / +1
Query: 736 R*GLSTGGARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPV 557
R L++ GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPV
Sbjct: 19 RESLASCGAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPV 198
Query: 556 TGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
TGK+I GIPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 199 TGKRIHGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 357
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 401 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 222
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 221 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 99
>gb|AW042692.1|AW042692 ST23D06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST23D06, mRNA sequence
Length = 596
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +1
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 97 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 276
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 277 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 414
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 458 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 279
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 278 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 156
>gb|AW290179.1|AW290179 NXNV015A05F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015A05 5', mRNA sequence
Length = 488
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 44 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 223
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 224 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 361
Score = 173 bits (372), Expect = 2e-042
Identities = 71/95 (74%), Positives = 75/95 (78%)
Frame = +3 / -3
Query: 372 FNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWGMPWIFF 551
F FLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG+PWI
Sbjct: 387 FKXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGIPWILL 208
Query: 552 PVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 207 PVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 103
>gb|AW982027.1|AW982027 PC23A03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC23A03, mRNA sequence
Length = 585
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +1
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 13 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 192
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 193 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 330
Score = 179 bits (385), Expect = 2e-044
Identities = 76/101 (75%), Positives = 80/101 (79%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 374 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 195
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALFL WY SLPPGV T VWLDFVA
Sbjct: 194 IPWILLPVTGHLGPLALFLAVWYISLPPGVFRTLVWLDFVA 72
>gb|AL750317.1|AL750317 AL750317 RN Pinus pinaster cDNA clone RN01A10 similar to RP L34,
mRNA sequence
Length = 417
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 39 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 218
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 219 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 356
Score = 175 bits (376), Expect = 4e-043
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* TVL FL +LDLLYSAGLRWG
Sbjct: 400 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSAGLRWG 221
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 220 IPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA 98
>gb|BX249526.1|BX249526 BX249526 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP025A12 similar to 60S RIBOSOMAL PROTEIN
L34, mRNA sequence
Length = 676
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 74 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 253
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 254 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 391
Score = 175 bits (376), Expect = 4e-043
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* TVL FL +LDLLYSAGLRWG
Sbjct: 435 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSAGLRWG 256
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 255 IPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA 133
>gb|BX250231.1|BX250231 BX250231 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP034A07 similar to 60S RIBOSOMAL PROTEIN
L34, mRNA sequence
Length = 619
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +1
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 43 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 222
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 223 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 360
Score = 175 bits (376), Expect = 4e-043
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* TVL FL +LDLLYSAGLRWG
Sbjct: 404 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSAGLRWG 225
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 224 IPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA 102
>gb|BX252257.1|BX252257 BX252257 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP062A06 similar to 60S RIBOSOMAL PROTEIN
L34, mRNA sequence
Length = 694
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 140 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 319
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 320 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 457
Score = 175 bits (376), Expect = 4e-043
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* TVL FL +LDLLYSAGLRWG
Sbjct: 501 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSAGLRWG 322
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 321 IPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA 199
>gb|BX252258.1|BX252258 BX252258 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP062A07 similar to 60S RIBOSOMAL PROTEIN
L34, mRNA sequence
Length = 702
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 140 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 319
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 320 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 457
Score = 175 bits (376), Expect = 4e-043
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* TVL FL +LDLLYSAGLRWG
Sbjct: 501 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSAGLRWG 322
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 321 IPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA 199
>gb|BX253440.1|BX253440 BX253440 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083E07 similar to 60S RIBOSOMAL PROTEIN
L34, mRNA sequence
Length = 620
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +1
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 43 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 222
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 223 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 360
Score = 175 bits (376), Expect = 4e-043
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* TVL FL +LDLLYSAGLRWG
Sbjct: 404 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSAGLRWG 225
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 224 IPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA 102
>gb|BE496395.1|BE496395 NXCI_017_D01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_D01 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 558
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 33 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 212
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 213 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 350
Score = 171 bits (369), Expect = 4e-042
Identities = 73/101 (72%), Positives = 77/101 (76%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F LTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 394 SLDF*IFKXXLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 215
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 214 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 92
>gb|BF010485.1|BF010485 NXCI_084_E08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_084_E08 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 395
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 33 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 212
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 213 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 350
Score = 172 bits (371), Expect = 2e-042
Identities = 71/95 (74%), Positives = 75/95 (78%)
Frame = +3 / -2
Query: 372 FNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWGMPWIFF 551
F FLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG+PWI
Sbjct: 376 FXXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGIPWILL 197
Query: 552 PVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 196 PVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 92
>gb|BF609105.1|BF609105 NXSI_040_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_040_D10 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 65 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 244
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 245 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 382
Score = 175 bits (376), Expect = 4e-043
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F FLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 426 SLDF*IFKXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 247
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 246 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 124
>gb|BQ699020.1|BQ699020 NXRV118_D10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV118_D10 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 567
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 47 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 226
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 227 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 364
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 408 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 229
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 228 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 106
>gb|BQ699236.1|BQ699236 NXRV121_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_B09 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 568
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +1
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 136 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 315
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 316 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 453
Score = 172 bits (370), Expect = 3e-042
Identities = 71/95 (74%), Positives = 75/95 (78%)
Frame = +3 / -3
Query: 372 FNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWGMPWIFF 551
F T LTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG+PWI
Sbjct: 479 FKTXLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGIPWILL 300
Query: 552 PVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 299 PVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 195
>gb|BQ700831.1|BQ700831 NXRV112_A06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV112_A06 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 521
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 47 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 226
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 227 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 364
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 408 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 229
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 228 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 106
>gb|CD026825.1|CD026825 NXNV015A05 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015A05 5' similar to Arabidopsis thaliana sequence
At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 488
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 44 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 223
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 224 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 361
Score = 173 bits (372), Expect = 2e-042
Identities = 71/95 (74%), Positives = 75/95 (78%)
Frame = +3 / -3
Query: 372 FNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWGMPWIFF 551
F FLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG+PWI
Sbjct: 387 FKXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGIPWILL 208
Query: 552 PVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 207 PVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 103
>gb|CF395922.1|CF395922 RTDS2_19_G07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_19_G07_A021 5', mRNA sequence
Length = 736
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 75 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 254
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 255 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 392
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 436 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 257
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 256 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 134
>gb|CF470303.1|CF470303 RTDS1_18_D01.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_18_D01_A015 5', mRNA sequence
Length = 735
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +1
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 61 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 240
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 241 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 378
Score = 170 bits (366), Expect = 1e-041
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 422 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 243
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T V LDFVA
Sbjct: 242 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLV*LDFVA 120
>gb|CF471664.1|CF471664 RTDS1_6_G10.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_6_G10_A015 3', mRNA sequence
Length = 635
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +1
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 91 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 270
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 271 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 408
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 452 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 273
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 272 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 150
>gb|CO165995.1|CO165995 FLD1_58_C11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_C11_A029 5', mRNA sequence
Length = 853
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / -3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 500 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 321
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 320 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 183
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / +1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 139 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 318
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 319 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 441
>gb|CX648845.1|CX648845 COLD1_31_G04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_31_G04_A029 3', mRNA sequence
Length = 659
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 11 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 190
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 191 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 328
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 372 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 193
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 192 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 70
>gb|CX648922.1|CX648922 COLD1_31_G04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_31_G04_A029 5', mRNA sequence
Length = 524
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 87 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 266
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 267 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 404
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 448 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 269
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 268 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 146
>gb|CX715540.1|CX715540 RTPQ1_34_G10.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_34_G10_A032 5', mRNA sequence
Length = 596
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +1
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 61 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 240
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 241 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 378
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 422 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 243
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 242 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 120
>gb|DR088564.1|DR088564 RTAL1_2_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_2_F09_A029 5', mRNA sequence
Length = 736
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / +2
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 98 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 277
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 278 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 415
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 459 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 280
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 279 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 157
>gb|DR167170.1|DR167170 RTPHOS1_17_D09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_17_D09_A029 3', mRNA sequence
Length = 650
Score = 216 bits (466), Expect = 2e-055
Identities = 90/106 (84%), Positives = 97/106 (91%)
Frame = -2 / -3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 552 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 373
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 372 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 235
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / +2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 191 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 370
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 371 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 493
>gb|BG040349.1|BG040349 NXSI_107_C07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_107_C07 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 528
Score = 215 bits (464), Expect = 3e-055
Identities = 88/100 (88%), Positives = 95/100 (95%)
Frame = -2 / +1
Query: 697 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 518
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 34 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 213
Query: 517 AEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
AEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 214 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 333
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 377 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 198
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 197 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 75
>gb|CF392690.1|CF392690 RTDR3_5_E02.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_E02_A022 5', mRNA
sequence
Length = 500
Score = 215 bits (464), Expect = 3e-055
Identities = 88/100 (88%), Positives = 95/100 (95%)
Frame = -2 / +2
Query: 697 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 518
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 11 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 190
Query: 517 AEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
AEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 191 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 310
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 354 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 175
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 174 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 52
>gb|BX676882.1|BX676882 BX676882 RN Pinus pinaster cDNA clone RN13D08, mRNA sequence
Length = 420
Score = 215 bits (464), Expect = 3e-055
Identities = 88/100 (88%), Positives = 95/100 (95%)
Frame = -2 / +2
Query: 697 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 518
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 107 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 286
Query: 517 AEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
AEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 287 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 406
Score = 166 bits (356), Expect = 2e-040
Identities = 68/91 (74%), Positives = 73/91 (80%)
Frame = +3 / -1
Query: 384 LTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWGMPWIFFPVTG 563
LTIFCSST+ AR+I S TA PD+TPP* TVL FL +LDLLYSAGLRWG+PWI PVTG
Sbjct: 420 LTIFCSSTKNARIIRSRTAEPDNTPP*ALLTVLLFLLSLDLLYSAGLRWGIPWILLPVTG 241
Query: 564 HLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
HLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 240 HLGPLALFFAVWYISLPPGVFKTLVWLDFVA 148
>gb|BX682720.1|BX682720 BX682720 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 120F02 similar to 60S ribosomal protein L34,
mRNA sequence
Length = 553
Score = 215 bits (464), Expect = 3e-055
Identities = 88/100 (88%), Positives = 95/100 (95%)
Frame = -2 / +2
Query: 697 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 518
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 56 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 235
Query: 517 AEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
AEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 236 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 355
Score = 175 bits (376), Expect = 4e-043
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* TVL FL +LDLLYSAGLRWG
Sbjct: 399 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSAGLRWG 220
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 219 IPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA 97
>gb|CO361147.1|CO361147 NDL2_3_C03.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_3_C03_A029 3', mRNA sequence
Length = 790
Score = 215 bits (464), Expect = 3e-055
Identities = 88/100 (88%), Positives = 95/100 (95%)
Frame = -2 / -2
Query: 697 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 518
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 768 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 589
Query: 517 AEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
AEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 588 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 469
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / +2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 425 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 604
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 605 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 727
>gb|CX646462.1|CX646462 COLD1_9_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_B07_A029 5', mRNA sequence
Length = 822
Score = 215 bits (464), Expect = 3e-055
Identities = 88/100 (88%), Positives = 95/100 (95%)
Frame = -2 / +1
Query: 697 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 518
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 103 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 282
Query: 517 AEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
AEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 283 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 402
Score = 177 bits (382), Expect = 6e-044
Identities = 79/125 (63%), Positives = 85/125 (68%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 446 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 267
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVAXXXXXXXXXXXTILPPSRA 713
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA I +A
Sbjct: 266 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAISSSQKA 87
Query: 714 PPVDK 728
P + K
Sbjct: 86 PQLAK 72
>gb|DR744690.1|DR744690 RTCU1_24_E12.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_E12_A029 3', mRNA sequence
Length = 550
Score = 215 bits (464), Expect = 3e-055
Identities = 88/100 (88%), Positives = 95/100 (95%)
Frame = -2 / +3
Query: 697 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 518
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 15 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 194
Query: 517 AEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
AEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 195 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 314
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -1
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 358 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 179
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 178 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 56
>gb|DR745218.1|DR745218 RTCU1_27_H05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_27_H05_A029 5', mRNA sequence
Length = 677
Score = 215 bits (464), Expect = 3e-055
Identities = 88/100 (88%), Positives = 95/100 (95%)
Frame = -2 / +2
Query: 697 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 518
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 29 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 208
Query: 517 AEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
AEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 209 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 328
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 372 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 193
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 192 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 70
>gb|BE643823.1|BE643823 NXCI_047_F11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_047_F11 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 458
Score = 213 bits (459), Expect = 2e-054
Identities = 89/106 (83%), Positives = 96/106 (90%)
Frame = -2 / +3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 39 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 218
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YG VLSG+AVR+RIIRAFLVEE
Sbjct: 219 IPHLRPAEYKRSRLSRNRRTVNRAYGXVLSGSAVRDRIIRAFLVEE 356
Score = 167 bits (359), Expect = 9e-041
Identities = 72/101 (71%), Positives = 76/101 (75%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F LTIFCSST+ AR+I S TA PD T P* FTVL FL +LDLLYSAGLRWG
Sbjct: 400 SLDF*IFXXXLTIFCSSTKNARIIRSRTAEPDRTXP*ALFTVLLFLLSLDLLYSAGLRWG 221
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 220 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 98
>gb|BF518220.1|BF518220 NXSI_036_E04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_036_E04 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 212 bits (458), Expect = 2e-054
Identities = 87/97 (89%), Positives = 93/97 (95%)
Frame = -2 / +1
Query: 688 QRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEY 509
QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRPAEY
Sbjct: 1 QRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRPAEY 180
Query: 508 KRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
KRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 181 KRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 291
Score = 171 bits (367), Expect = 7e-042
Identities = 72/100 (72%), Positives = 76/100 (76%)
Frame = +3 / -3
Query: 357 LVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWGM 536
L F FLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG+
Sbjct: 332 LDF*XXKXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGI 153
Query: 537 PWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 152 PWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 33
>gb|BE209319.1|BE209319 NXNV_166_C12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_166_C12 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 413
Score = 211 bits (456), Expect = 4e-054
Identities = 86/100 (86%), Positives = 94/100 (94%)
Frame = -2 / +2
Query: 697 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 518
+M QRLTYRKRHSYAT+SNQTRV+KTPGG+L+YQ KKRASGPKCP TGK+I GIPHLRP
Sbjct: 8 EMAQRLTYRKRHSYATRSNQTRVLKTPGGRLIYQTAKKRASGPKCPFTGKRIHGIPHLRP 187
Query: 517 AEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
AEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 188 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 307
Score = 164 bits (352), Expect = 9e-040
Identities = 68/95 (71%), Positives = 72/95 (75%)
Frame = +3 / -3
Query: 372 FNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWGMPWIFF 551
F LTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG+PWI
Sbjct: 333 FXXXLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGIPWILL 154
Query: 552 PVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
PV GHLGPLALF WY SLPPGV T VWLD VA
Sbjct: 153 PVKGHLGPLALFFAVWYISLPPGVFRTLVWLDLVA 49
>gb|CF470550.1|CF470550 RTDS1_13_E11.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_E11_A015 3', mRNA sequence
Length = 681
Score = 211 bits (456), Expect = 4e-054
Identities = 89/106 (83%), Positives = 96/106 (90%)
Frame = -2 / +3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASG KCPVTGK+I G
Sbjct: 33 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGLKCPVTGKRIHG 212
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 213 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 350
Score = 174 bits (375), Expect = 6e-043
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 394 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 215
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHL PLALF WY SLPPGV T VWLDFVA
Sbjct: 214 IPWILLPVTGHLSPLALFFAVWYISLPPGVFRTLVWLDFVA 92
>gb|CF470616.1|CF470616 RTDS1_13_E11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_E11_A015 5', mRNA sequence
Length = 742
Score = 211 bits (456), Expect = 4e-054
Identities = 89/106 (83%), Positives = 96/106 (90%)
Frame = -2 / +1
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASG KCPVTGK+I G
Sbjct: 76 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGLKCPVTGKRIHG 255
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 256 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 393
Score = 174 bits (375), Expect = 6e-043
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 437 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 258
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHL PLALF WY SLPPGV T VWLDFVA
Sbjct: 257 IPWILLPVTGHLSPLALFFAVWYISLPPGVFRTLVWLDFVA 135
>gb|CV035055.1|CV035055 RTNACL1_13_G07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_G07_A029 3', mRNA sequence
Length = 688
Score = 211 bits (455), Expect = 5e-054
Identities = 90/113 (79%), Positives = 99/113 (87%)
Frame = -2 / +1
Query: 736 R*GLSTGGARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPV 557
R L++ GA +M QRLTYRKRHSYATKSNQT V+KTPGG+L+ Q KKRASGPKCPV
Sbjct: 37 RESLASCGAN*EEEMAQRLTYRKRHSYATKSNQTTVLKTPGGRLISQTAKKRASGPKCPV 216
Query: 556 TGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
TGK+I GIPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 217 TGKRIHGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 375
Score = 172 bits (370), Expect = 3e-042
Identities = 74/101 (73%), Positives = 78/101 (77%)
Frame = +3 / -3
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 419 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 240
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF W SLPPGV T VWLDFVA
Sbjct: 239 IPWILLPVTGHLGPLALFFAVWDISLPPGVFRTVVWLDFVA 117
Score = 101 bits (215), Expect = 7e-021
Identities = 48/114 (42%), Positives = 65/114 (57%)
Frame = -1 / +3
Query: 698 QDGAASDLPQAAQLCHEVQPDAGRQDPWWQARVPVHQEESQRAQVSRDREEDPGHSPSEA 519
+DG +D+ QA QLC E+ PD G +D W+A +P +EE Q +S R+E+P SPSEA
Sbjct: 75 RDGTEADVSQAPQLCDEI*PDYGSKDSRWEANIPDRKEEGQWT*MSCYRQENPWDSPSEA 254
Query: 518 SXXXXXXXX*EPQNCEPSLWGSTIWNCS*RKDHPCFPG*RAEDCQEGVEITEDQ 357
S E +NC+ SLW +I R ++ G R EDCQEG E +E Q
Sbjct: 255 S*VQEVKA*QEQENCKQSLWRCSIGFSCPRPNYSSILGRRTEDCQEGFEDSEVQ 416
>gb|DR744762.1|DR744762 RTCU1_24_E12.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_E12_A029 5', mRNA sequence
Length = 545
Score = 210 bits (453), Expect = 1e-053
Identities = 86/96 (89%), Positives = 92/96 (95%)
Frame = -2 / +3
Query: 685 RLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEYK 506
RLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRPAEYK
Sbjct: 3 RLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRPAEYK 182
Query: 505 RSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
RSRLSRNRRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 183 RSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 290
Score = 177 bits (381), Expect = 9e-044
Identities = 75/101 (74%), Positives = 79/101 (78%)
Frame = +3 / -2
Query: 354 SLVFCNFNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWG 533
SL F F TFLTIFCSST+ AR+I S TA PD TPP* FTVL FL +LDLLYSAGLRWG
Sbjct: 334 SLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 155
Query: 534 MPWIFFPVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
+PWI PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 154 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 32
>gb|BE496610.1|BE496610 NXCI_021_G01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_021_G01 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 455
Score = 210 bits (452), Expect = 1e-053
Identities = 88/106 (83%), Positives = 94/106 (88%)
Frame = -2 / +3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 39 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 218
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRLSRNRRTVNR YGGVLSG+AVR IIRAF VEE
Sbjct: 219 IPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGSAVRXXIIRAFXVEE 356
Score = 163 bits (351), Expect = 1e-039
Identities = 67/95 (70%), Positives = 71/95 (74%)
Frame = +3 / -2
Query: 372 FNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWGMPWIFF 551
F LT FCSST+ AR+ TA PD TPP* FTVL FL +LDLLYSAGLRWG+PWI
Sbjct: 382 FXXXLTXFCSSTKNARIXXXRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGIPWILL 203
Query: 552 PVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 202 PVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 98
>gb|BQ697224.1|BQ697224 NXPV_051_A06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_051_A06 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 431
Score = 207 bits (447), Expect = 7e-053
Identities = 85/100 (85%), Positives = 92/100 (92%)
Frame = -2 / +1
Query: 697 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 518
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 16 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 195
Query: 517 AEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
AEYKRSRL RRTVNR YGGVLSG+AVR+RIIRAFLVEE
Sbjct: 196 AEYKRSRLXXXRRTVNRAYGGVLSGSAVRDRIIRAFLVEE 315
Score = 171 bits (368), Expect = 5e-042
Identities = 70/95 (73%), Positives = 74/95 (77%)
Frame = +3 / -1
Query: 372 FNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWGMPWIFF 551
F FLTIFCSST+ AR+I S TA PD TPP* FTVL L +LDLLYSAGLRWG+PWI
Sbjct: 341 FKXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLXLXSLDLLYSAGLRWGIPWILL 162
Query: 552 PVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 161 PVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 57
>gb|BG040040.1|BG040040 NXSI_105_H03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_105_H03 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 423
Score = 205 bits (443), Expect = 2e-052
Identities = 86/106 (81%), Positives = 93/106 (87%)
Frame = -2 / +3
Query: 715 GARDGGKMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQG 536
GA +M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I G
Sbjct: 75 GAN*EEEMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHG 254
Query: 535 IPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEE 398
IPHLRPAEYKRSRL RRTVNR YGGVLSG+AVR+RIIRAFLV E
Sbjct: 255 IPHLRPAEYKRSRLXXXRRTVNRAYGGVLSGSAVRDRIIRAFLVXE 392
Score = 163 bits (351), Expect = 1e-039
Identities = 67/95 (70%), Positives = 71/95 (74%)
Frame = +3 / -3
Query: 372 FNTFLTIFCSSTRKARMILSLTAVPDSTPP*GRFTVLRFLDNLDLLYSAGLRWGMPWIFF 551
F TIFCS T+ AR+I S TA PD TPP* FTVL L +LDLLYSAGLRWG+PWI
Sbjct: 418 FXXXXTIFCSXTKNARIIRSRTAEPDRTPP*ALFTVLLXLXSLDLLYSAGLRWGIPWILL 239
Query: 552 PVTGHLGPLALFLVYWYTSLPPGVLTTRVWLDFVA 656
PVTGHLGPLALF WY SLPPGV T VWLDFVA
Sbjct: 238 PVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA 134
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 422,702,123
Number of Sequences: 355925
Number of extensions: 6035242
Number of successful extensions: 51055
Number of sequences better than 1.0e-020: 129
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11592293675
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)