TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521918.2.1
(417 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT632377.1|DT632377 EST1147308 Normalized pine embryo li... 111 2e-024
gb|CF396236.1|CF396236 RTDS2_15_B10.g1_A021 Drought-stresse... 110 5e-024
gb|CO201200.1|CO201200 RTCNT2_4_F06.b1_A029 Root control 2 ... 110 5e-024
gb|CO368828.1|CO368828 RTK1_43_D02.b1_A029 Roots minus pota... 110 5e-024
gb|CO368900.1|CO368900 RTK1_43_D02.g1_A029 Roots minus pota... 110 5e-024
gb|DR014316.1|DR014316 HEAT1_24_F02.g1_A029 Root at 37 C fo... 110 5e-024
gb|DR097556.1|DR097556 STRR1_35_B05.g4_A033 Stem Response R... 110 5e-024
gb|DR385868.1|DR385868 RTHG1_11_H03.b1_A029 Roots plus adde... 110 5e-024
gb|DR385955.1|DR385955 RTHG1_11_H03.g1_A029 Roots plus adde... 110 5e-024
gb|DR684419.1|DR684419 EST1074496 Normalized pine embryo li... 110 5e-024
gb|DR689409.1|DR689409 EST1079495 Normalized pine embryo li... 110 5e-024
gb|DT635454.1|DT635454 EST1150385 Normalized pine embryo li... 110 5e-024
gb|DR112159.1|DR112159 RTS1_26_F11.b1_A029 Roots minus sulf... 100 5e-021
>gb|DT632377.1|DT632377 EST1147308 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFJ37 3' end, mRNA sequence
Length = 833
Score = 111 bits (238), Expect = 2e-024
Identities = 43/61 (70%), Positives = 52/61 (85%)
Frame = +2 / +2
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG++FV+E+
Sbjct: 584 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVSFVIEE 763
Query: 185 * 187
*
Sbjct: 764 * 766
>gb|CF396236.1|CF396236 RTDS2_15_B10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_15_B10_A021 5', mRNA sequence
Length = 711
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / -1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 414 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 235
Query: 185 * 187
*
Sbjct: 234 * 232
>gb|CO201200.1|CO201200 RTCNT2_4_F06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_F06_A029 3', mRNA sequence
Length = 706
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / +1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 175 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 354
Query: 185 * 187
*
Sbjct: 355 * 357
>gb|CO368828.1|CO368828 RTK1_43_D02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_43_D02_A029 3', mRNA sequence
Length = 787
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / +1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 223 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 402
Query: 185 * 187
*
Sbjct: 403 * 405
>gb|CO368900.1|CO368900 RTK1_43_D02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_43_D02_A029 5', mRNA sequence
Length = 754
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / +1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 520 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 699
Query: 185 * 187
*
Sbjct: 700 * 702
>gb|DR014316.1|DR014316 HEAT1_24_F02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_F02_A029 5', mRNA sequence
Length = 848
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / -2
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 487 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 308
Query: 185 * 187
*
Sbjct: 307 * 305
>gb|DR097556.1|DR097556 STRR1_35_B05.g4_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_35_B05_A033 5', mRNA sequence
Length = 889
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / +3
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 357 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 536
Query: 185 * 187
*
Sbjct: 537 * 539
>gb|DR385868.1|DR385868 RTHG1_11_H03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_H03_A029 3', mRNA sequence
Length = 820
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / -1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 235 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 56
Query: 185 * 187
*
Sbjct: 55 * 53
>gb|DR385955.1|DR385955 RTHG1_11_H03.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_H03_A029 5', mRNA sequence
Length = 708
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / -1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 636 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 457
Query: 185 * 187
*
Sbjct: 456 * 454
>gb|DR684419.1|DR684419 EST1074496 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAS42 3' end, mRNA sequence
Length = 664
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / +2
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 422 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 601
Query: 185 * 187
*
Sbjct: 602 * 604
>gb|DR689409.1|DR689409 EST1079495 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACI27 3' end, mRNA sequence
Length = 810
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / +1
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 574 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 753
Query: 185 * 187
*
Sbjct: 754 * 756
>gb|DT635454.1|DT635454 EST1150385 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGH04 3' end, mRNA sequence
Length = 826
Score = 110 bits (235), Expect = 5e-024
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +2 / +3
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVED 184
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG+ FV+E+
Sbjct: 582 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDGVGFVIEE 761
Query: 185 * 187
*
Sbjct: 762 * 764
>gb|DR112159.1|DR112159 RTS1_26_F11.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_26_F11_A029 3', mRNA sequence
Length = 779
Score = 100 bits (213), Expect = 5e-021
Identities = 39/53 (73%), Positives = 44/53 (83%)
Frame = +2 / -3
Query: 5 VFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDG 163
VFRV G +FLKLN GTWHAGPLFK ++DFYNLELS+TN VDHTTH F + DG
Sbjct: 159 VFRVQGSQFLKLNVGTWHAGPLFKDASMDFYNLELSDTNEVDHTTHFFSEKDG 1
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 241,136,404
Number of Sequences: 355925
Number of extensions: 3422375
Number of successful extensions: 74475
Number of sequences better than 1.0e-020: 13
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 4807395560
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)