TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.2
(850 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO366784.1|CO366784 RTK1_30_C03.b1_A029 Roots minus pota... 136 2e-044
gb|DR100804.1|DR100804 STRR1_68_D11.b1_A033 Stem Response R... 136 2e-044
gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch... 136 2e-044
gb|DR024075.1|DR024075 STRS1_62_C08.b1_A034 Shoot tip pitch... 136 2e-044
gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered lo... 136 2e-044
gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo li... 134 8e-044
gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo li... 134 8e-044
gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response R... 136 2e-043
gb|DR024213.1|DR024213 STRS1_63_D04.b1_A034 Shoot tip pitch... 124 1e-040
gb|CO165868.1|CO165868 FLD1_57_E04.g1_A029 Root flooded Pin... 117 1e-038
gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pin... 136 2e-037
gb|CO364393.1|CO364393 RTK1_15_A08.g1_A029 Roots minus pota... 108 7e-036
gb|DR025587.1|DR025587 STRS1_72_B09.g1_A034 Shoot tip pitch... 108 7e-036
gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciat... 133 1e-035
gb|BG317820.1|BG317820 NXPV_006_B01_F NXPV (Nsf Xylem Plani... 135 2e-034
gb|DR069348.1|DR069348 RTDK1_6_E03.g1_A029 Roots, dark Pinu... 109 2e-034
gb|DR025125.1|DR025125 STRS1_69_F02.g1_A034 Shoot tip pitch... 109 2e-034
gb|DR165633.1|DR165633 RTPHOS1_6_H02.b1_A029 Roots minus ph... 96 3e-032
gb|CO170146.1|CO170146 NDL1_12_B03.b1_A029 Needles control ... 97 1e-030
gb|DR165931.1|DR165931 RTPHOS1_8_F02.b1_A029 Roots minus ph... 86 3e-029
gb|DR069285.1|DR069285 RTDK1_6_E03.b1_A029 Roots, dark Pinu... 121 9e-027
gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pin... 114 1e-024
gb|CO165878.1|CO165878 FLD1_57_F04.g1_A029 Root flooded Pin... 70 2e-024
gb|DR054746.1|DR054746 RTCA1_19_G05.b1_A029 Roots minus cal... 70 2e-024
gb|DR025044.1|DR025044 STRS1_69_F02.b1_A034 Shoot tip pitch... 73 2e-023
gb|CO162234.1|CO162234 FLD1_34_B10.b1_A029 Root flooded Pin... 73 2e-023
>gb|CO366784.1|CO366784 RTK1_30_C03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_C03_A029 3', mRNA sequence
Length = 853
Score = 136 bits (292), Expect(2) = 2e-044
Identities = 60/117 (51%), Positives = 70/117 (59%)
Frame = -1 / +2
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 113 YPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYG 292
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
KF AKF++S + Y PAI AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 293 KFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 463
Score = 62.9 bits (131), Expect(2) = 2e-044
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +2
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 482 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 589
>gb|DR100804.1|DR100804 STRR1_68_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 3', mRNA sequence
Length = 821
Score = 136 bits (292), Expect(2) = 2e-044
Identities = 60/117 (51%), Positives = 70/117 (59%)
Frame = -1 / +1
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 82 YPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYG 261
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
KF AKF++S + Y PAI AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 262 KFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 432
Score = 62.9 bits (131), Expect(2) = 2e-044
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +1
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 451 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 558
>gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 5', mRNA sequence
Length = 766
Score = 136 bits (292), Expect(2) = 2e-044
Identities = 60/117 (51%), Positives = 70/117 (59%)
Frame = -1 / +2
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 242 YPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYG 421
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
KF AKF++S + Y PAI AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 422 KFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 592
Score = 62.9 bits (131), Expect(2) = 2e-044
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +2
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 611 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 718
>gb|DR024075.1|DR024075 STRS1_62_C08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 3', mRNA sequence
Length = 763
Score = 136 bits (292), Expect(2) = 2e-044
Identities = 60/117 (51%), Positives = 70/117 (59%)
Frame = -1 / +2
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 8 YPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYG 187
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
KF AKF++S + Y PAI AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 188 KFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 358
Score = 62.9 bits (131), Expect(2) = 2e-044
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +2
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 377 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 484
>gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_F05_A021 5', mRNA sequence
Length = 710
Score = 136 bits (292), Expect(2) = 2e-044
Identities = 60/117 (51%), Positives = 70/117 (59%)
Frame = -1 / +2
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 200 YPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYG 379
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
KF AKF++S + Y PAI AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 380 KFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 550
Score = 62.9 bits (131), Expect(2) = 2e-044
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +2
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 569 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 676
>gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD90 3' end, mRNA sequence
Length = 842
Score = 134 bits (288), Expect(2) = 8e-044
Identities = 59/117 (50%), Positives = 69/117 (58%)
Frame = -1 / +1
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 307 YPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYG 486
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
KF AKF++S + Y PAI QDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 487 KFVAEAKFRDSSKEYEPAIRVQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 657
Score = 62.9 bits (131), Expect(2) = 8e-044
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +1
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 676 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 783
>gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO79 3' end, mRNA sequence
Length = 780
Score = 134 bits (288), Expect(2) = 8e-044
Identities = 59/117 (50%), Positives = 69/117 (58%)
Frame = -1 / +1
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 268 YPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYG 447
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
KF AKF++S + Y PAI QDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 448 KFVAEAKFRDSSKEYEPAIRVQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 618
Score = 62.9 bits (131), Expect(2) = 8e-044
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +1
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 637 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 744
>gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 5', mRNA sequence
Length = 735
Score = 136 bits (292), Expect(2) = 2e-043
Identities = 60/117 (51%), Positives = 70/117 (59%)
Frame = -1 / +3
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 264 YPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYG 443
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
KF AKF++S + Y PAI AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 444 KFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 614
Score = 59.7 bits (124), Expect(2) = 2e-043
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = -1 / +3
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRL 335
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRL
Sbjct: 633 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRL 734
>gb|DR024213.1|DR024213 STRS1_63_D04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_D04_A034 3', mRNA sequence
Length = 778
Score = 124 bits (265), Expect(2) = 1e-040
Identities = 56/109 (51%), Positives = 66/109 (60%)
Frame = -1 / +3
Query: 787 AXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYGKFXXXAKF 608
A +INI W MYF LP DGN GS+A+ CLQ SRRI YGKF AKF
Sbjct: 3 ASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKF 182
Query: 607 QESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
++S + Y AI AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 183 RDSSKEYELAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 329
Score = 62.9 bits (131), Expect(2) = 1e-040
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +3
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 348 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 455
>gb|CO165868.1|CO165868 FLD1_57_E04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 5', mRNA sequence
Length = 877
Score = 117 bits (250), Expect(2) = 1e-038
Identities = 52/97 (53%), Positives = 61/97 (62%)
Frame = -1 / -2
Query: 751 MYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYGKFXXXAKFQESPEAYTPAII 572
MYF LP DGN GS+A+ CLQ SRRI YGKF AKF++S + Y PAI
Sbjct: 873 MYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIR 694
Query: 571 AQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 693 AQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 583
Score = 62.9 bits (131), Expect(2) = 1e-038
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / -2
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 564 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 457
>gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 3', mRNA sequence
Length = 788
Score = 136 bits (292), Expect(2) = 2e-037
Identities = 60/117 (51%), Positives = 70/117 (59%)
Frame = -1 / -3
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 435 YPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYG 256
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
KF AKF++S + Y PAI AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 255 KFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 85
Score = 39.6 bits (80), Expect(2) = 2e-037
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -1 / -3
Query: 436 PVYKIRPSLVAELYSYRIMPLT 371
PVYKI+PSL+A LY+ +MPLT
Sbjct: 66 PVYKIQPSLIAGLYAQWVMPLT 1
>gb|CO364393.1|CO364393 RTK1_15_A08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_A08_A029 5', mRNA sequence
Length = 866
Score = 108 bits (230), Expect(2) = 7e-036
Identities = 47/82 (57%), Positives = 56/82 (68%)
Frame = -1 / -3
Query: 706 DGNAGSSALXXXTCLQXXSRRIXYGKFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXT 527
DGN GS+A+ CLQ SRRI YGKF AKF++S + Y PAI AQDR+ LMNLLT
Sbjct: 846 DGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFEN 667
Query: 526 VERAVEHRVEAKAKIFGQEVNI 461
VE V+ RVE K +GQEVN+
Sbjct: 666 VEAMVQRRVELKTMTYGQEVNL 601
Score = 62.9 bits (131), Expect(2) = 7e-036
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / -3
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 582 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 475
>gb|DR025587.1|DR025587 STRS1_72_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_72_B09_A034 5', mRNA sequence
Length = 698
Score = 108 bits (230), Expect(2) = 7e-036
Identities = 47/82 (57%), Positives = 56/82 (68%)
Frame = -1 / -2
Query: 706 DGNAGSSALXXXTCLQXXSRRIXYGKFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXT 527
DGN GS+A+ CLQ SRRI YGKF AKF++S + Y PAI AQDR+ LMNLLT
Sbjct: 676 DGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFEN 497
Query: 526 VERAVEHRVEAKAKIFGQEVNI 461
VE V+ RVE K +GQEVN+
Sbjct: 496 VEAMVQRRVELKTMTYGQEVNL 431
Score = 62.9 bits (131), Expect(2) = 7e-036
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / -2
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 412 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 305
>gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088F04, mRNA sequence
Length = 660
Score = 133 bits (285), Expect(2) = 1e-035
Identities = 59/117 (50%), Positives = 69/117 (58%)
Frame = -1 / +2
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 227 YPQVLHPAASNININKEIWTMYFVELLPRIAAMGDDGNYGSTAVCDVACLQAISRRIHYG 406
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
KF AKF++S + Y PAI AQD + LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 407 KFVAEAKFRDSSKEYEPAIRAQDGEALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 577
Score = 37.3 bits (75), Expect(2) = 1e-035
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = -1 / +2
Query: 436 PVYKIRPSLVAELYSYRIMPL 374
PVYKI+PSL+A LY+ +MPL
Sbjct: 596 PVYKIQPSLIAGLYAQWVMPL 658
>gb|BG317820.1|BG317820 NXPV_006_B01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_006_B01 5' similar to Arabidopsis
thaliana sequence At1g69370 chorismate mutase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 600
Score = 135 bits (289), Expect(2) = 2e-034
Identities = 59/112 (52%), Positives = 69/112 (61%)
Frame = -1 / +3
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A SINI W MY+D LP DGN GS+A+ CLQ S+RI YG
Sbjct: 141 YPPVLHPAAQSININKLIWSMYYDSLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYG 320
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFG 476
KF AKF+ SPE Y AI AQD++QLMNLLT +VE AV+ RV KAK +G
Sbjct: 321 KFVAEAKFRGSPELYEVAIRAQDKEQLMNLLTFESVETAVQRRVXQKAKAYG 476
Score = 31.3 bits (62), Expect(2) = 2e-034
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1 / +3
Query: 430 YKIRPSLVAELYSYRIMPLTKEVEVAYL 347
YKI+PSL L IMPLTK YL
Sbjct: 516 YKIQPSLXXXLXXDWIMPLTKMXXXEYL 599
>gb|DR069348.1|DR069348 RTDK1_6_E03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_E03_A029 5', mRNA sequence
Length = 874
Score = 109 bits (233), Expect(2) = 2e-034
Identities = 48/82 (58%), Positives = 59/82 (71%)
Frame = -1 / -2
Query: 706 DGNAGSSALXXXTCLQXXSRRIXYGKFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXT 527
DGN GS+A+ CLQ S+RI YGKF AKF+ SPE Y AI AQD++QLMNLLT +
Sbjct: 861 DGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDKEQLMNLLTFES 682
Query: 526 VERAVEHRVEAKAKIFGQEVNI 461
VE AV+ RVE KAK +G EV++
Sbjct: 681 VETAVQRRVEQKAKAYGLEVSL 616
Score = 56.5 bits (117), Expect(2) = 2e-034
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = -1 / -2
Query: 430 YKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
YKI+PSL+A LY IMPLTK V+V YLLRRLD*
Sbjct: 591 YKIQPSLIANLYGDWIMPLTKMVQVEYLLRRLD* 490
>gb|DR025125.1|DR025125 STRS1_69_F02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_F02_A034 5', mRNA sequence
Length = 695
Score = 109 bits (233), Expect(2) = 2e-034
Identities = 48/82 (58%), Positives = 59/82 (71%)
Frame = -1 / +2
Query: 706 DGNAGSSALXXXTCLQXXSRRIXYGKFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXT 527
DGN GS+A+ CLQ S+RI YGKF AKF+ SPE Y AI AQD++QLMNLLT +
Sbjct: 2 DGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDKEQLMNLLTFES 181
Query: 526 VERAVEHRVEAKAKIFGQEVNI 461
VE AV+ RVE KAK +G EV++
Sbjct: 182 VETAVQRRVEQKAKAYGLEVSL 247
Score = 56.5 bits (117), Expect(2) = 2e-034
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = -1 / +2
Query: 430 YKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
YKI+PSL+A LY IMPLTK V+V YLLRRLD*
Sbjct: 272 YKIQPSLIANLYGDWIMPLTKMVQVEYLLRRLD* 373
>gb|DR165633.1|DR165633 RTPHOS1_6_H02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_6_H02_A029 3', mRNA sequence
Length = 929
Score = 96.4 bits (204), Expect(2) = 3e-032
Identities = 42/76 (55%), Positives = 51/76 (67%)
Frame = -1 / +1
Query: 688 SALXXXTCLQXXSRRIXYGKFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVE 509
+A+ CLQ SRRI YGKF AKF++S + Y PAI AQDR+ LMNLLT VE V+
Sbjct: 1 TAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQ 180
Query: 508 HRVEAKAKIFGQEVNI 461
RVE K +GQEVN+
Sbjct: 181 RRVELKTMTYGQEVNL 228
Score = 62.9 bits (131), Expect(2) = 3e-032
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +1
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 247 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 354
>gb|CO170146.1|CO170146 NDL1_12_B03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_12_B03_A029 3', mRNA sequence
Length = 454
Score = 96.8 bits (205), Expect(2) = 1e-030
Identities = 42/69 (60%), Positives = 51/69 (73%)
Frame = -1 / +1
Query: 667 CLQXXSRRIXYGKFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKA 488
CLQ S+RI YGKF AKF+ SPE Y AI AQD++QLMNLLT +VE AV+ RVE KA
Sbjct: 7 CLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDKEQLMNLLTFESVETAVQRRVEQKA 186
Query: 487 KIFGQEVNI 461
K +G EV++
Sbjct: 187 KAYGLEVSL 213
Score = 56.5 bits (117), Expect(2) = 1e-030
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = -1 / +1
Query: 430 YKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
YKI+PSL+A LY IMPLTK V+V YLLRRLD*
Sbjct: 238 YKIQPSLIANLYGDWIMPLTKMVQVEYLLRRLD* 339
>gb|DR165931.1|DR165931 RTPHOS1_8_F02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_F02_A029 3', mRNA sequence
Length = 885
Score = 85.8 bits (181), Expect(2) = 3e-029
Identities = 37/63 (58%), Positives = 44/63 (69%)
Frame = -1 / +1
Query: 649 RRIXYGKFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQE 470
RRI YGKF AKF++S + Y PAI AQDR+ LMNLLT VE V+ RVE K +GQE
Sbjct: 1 RRIHYGKFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQE 180
Query: 469 VNI 461
VN+
Sbjct: 181 VNL 189
Score = 62.9 bits (131), Expect(2) = 3e-029
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +1
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 208 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 315
>gb|DR069285.1|DR069285 RTDK1_6_E03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_E03_A029 3', mRNA sequence
Length = 879
Score = 121 bits (258), Expect = 9e-027
Identities = 53/100 (53%), Positives = 61/100 (61%)
Frame = -1 / -1
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A SINI W MY+D LP DGN GS+A+ CLQ S+RI YG
Sbjct: 300 YPPVLHPAAQSININKLIWSMYYDSLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYG 121
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAV 512
KF AKF+ SPE Y AI AQD++QLMNLLT +VE AV
Sbjct: 120 KFVAEAKFRGSPELYEVAIRAQDKEQLMNLLTFESVETAV 1
>gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_F04_A029 3', mRNA sequence
Length = 527
Score = 114 bits (243), Expect = 1e-024
Identities = 51/100 (51%), Positives = 58/100 (58%)
Frame = -1 / -3
Query: 811 YXXXXHPXAXSINIXXXXWKMYFDXXLPXXXXXXSDGNAGSSALXXXTCLQXXSRRIXYG 632
Y HP A +INI W MYF LP DGN GS+A+ CLQ SRRI YG
Sbjct: 306 YPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYG 127
Query: 631 KFXXXAKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAV 512
KF AKF++S + Y PAI AQDR+ LMNLLT VE V
Sbjct: 126 KFVAEAKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMV 7
>gb|CO165878.1|CO165878 FLD1_57_F04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_F04_A029 5', mRNA sequence
Length = 706
Score = 69.8 bits (146), Expect(2) = 2e-024
Identities = 30/52 (57%), Positives = 37/52 (71%)
Frame = -1 / -3
Query: 616 AKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
AKF++S + Y PAI AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 704 AKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 549
Score = 62.9 bits (131), Expect(2) = 2e-024
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / -3
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 530 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 423
>gb|DR054746.1|DR054746 RTCA1_19_G05.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_G05_A029 3', mRNA sequence
Length = 621
Score = 69.8 bits (146), Expect(2) = 2e-024
Identities = 30/52 (57%), Positives = 37/52 (71%)
Frame = -1 / +2
Query: 616 AKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
AKF++S + Y PAI AQDR+ LMNLLT VE V+ RVE K +GQEVN+
Sbjct: 8 AKFRDSSKEYEPAIRAQDREALMNLLTFENVEAMVQRRVELKTMTYGQEVNL 163
Score = 62.9 bits (131), Expect(2) = 2e-024
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -1 / +2
Query: 436 PVYKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
PVYKI+PSL+A LY+ +MPLTK+V+V YLLRRLD*
Sbjct: 182 PVYKIQPSLIAGLYAQWVMPLTKKVQVEYLLRRLD* 289
>gb|DR025044.1|DR025044 STRS1_69_F02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_F02_A034 3', mRNA sequence
Length = 907
Score = 72.5 bits (152), Expect(2) = 2e-023
Identities = 32/52 (61%), Positives = 40/52 (76%)
Frame = -1 / +1
Query: 616 AKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
AKF+ SPE Y AI AQD++QLMNLLT +VE AV+ RVE KAK +G EV++
Sbjct: 7 AKFRGSPELYEVAIRAQDKEQLMNLLTFESVETAVQRRVEQKAKAYGLEVSL 162
Score = 56.5 bits (117), Expect(2) = 2e-023
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = -1 / +1
Query: 430 YKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
YKI+PSL+A LY IMPLTK V+V YLLRRLD*
Sbjct: 187 YKIQPSLIANLYGDWIMPLTKMVQVEYLLRRLD* 288
>gb|CO162234.1|CO162234 FLD1_34_B10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_B10_A029 3', mRNA sequence
Length = 712
Score = 72.5 bits (152), Expect(2) = 2e-023
Identities = 32/52 (61%), Positives = 40/52 (76%)
Frame = -1 / +2
Query: 616 AKFQESPEAYTPAIIAQDRDQLMNLLTXXTVERAVEHRVEAKAKIFGQEVNI 461
AKF+ SPE Y AI AQD++QLMNLLT +VE AV+ RVE KAK +G EV++
Sbjct: 8 AKFRGSPELYEVAIRAQDKEQLMNLLTFESVETAVQRRVEQKAKAYGLEVSL 163
Score = 56.5 bits (117), Expect(2) = 2e-023
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = -1 / +3
Query: 430 YKIRPSLVAELYSYRIMPLTKEVEVAYLLRRLD* 329
YKI+PSL+A LY IMPLTK V+V YLLRRLD*
Sbjct: 189 YKIQPSLIANLYGDWIMPLTKMVQVEYLLRRLD* 290
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 408,870,813
Number of Sequences: 355925
Number of extensions: 6498624
Number of successful extensions: 41665
Number of sequences better than 1.0e-020: 31
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12401058350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)