TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.1
(892 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pin... 313 1e-088
gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo li... 309 3e-087
gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo li... 298 5e-084
gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response R... 298 5e-084
gb|DR069285.1|DR069285 RTDK1_6_E03.b1_A029 Roots, dark Pinu... 310 1e-083
gb|CO162312.1|CO162312 FLD1_34_B10.g1_A029 Root flooded Pin... 306 2e-082
gb|DR685785.1|DR685785 EST1075862 Normalized pine embryo li... 306 2e-082
gb|DT632919.1|DT632919 EST1147850 Normalized pine embryo li... 306 2e-082
gb|DR024254.1|DR024254 STRS1_63_D04.g1_A034 Shoot tip pitch... 304 4e-082
gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch... 286 1e-080
gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciat... 284 8e-080
gb|DR095848.1|DR095848 STRR1_24_B06.b1_A033 Stem Response R... 288 4e-077
gb|CF667838.1|CF667838 RTCNT1_32_G06.g1_A029 Root control P... 262 2e-076
gb|BQ701847.1|BQ701847 NXSI_121_C04_F NXSI (Nsf Xylem Side ... 284 7e-076
gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered lo... 264 5e-074
gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pin... 271 5e-072
gb|DR054830.1|DR054830 RTCA1_19_G05.g1_A029 Roots minus cal... 257 7e-068
gb|CO197205.1|CO197205 GEO1_4_C10.g1_A029 Root gravitropism... 253 9e-067
gb|CO366854.1|CO366854 RTK1_30_C03.g1_A029 Roots minus pota... 251 4e-066
gb|AI813035.1|AI813035 20A4 Pine Lambda Zap Xylem library P... 246 2e-064
gb|BG317820.1|BG317820 NXPV_006_B01_F NXPV (Nsf Xylem Plani... 232 2e-060
gb|CO366784.1|CO366784 RTK1_30_C03.b1_A029 Roots minus pota... 217 5e-060
gb|DR100804.1|DR100804 STRR1_68_D11.b1_A033 Stem Response R... 201 3e-055
gb|BI077254.1|BI077254 NXPV_094_G08_F NXPV (Nsf Xylem Plani... 209 2e-053
gb|BG317911.1|BG317911 NXPV_007_B08_F NXPV (Nsf Xylem Plani... 208 6e-053
gb|DR687187.1|DR687187 EST1077266 Normalized pine embryo li... 200 9e-051
gb|BQ697550.1|BQ697550 NXPV_054_G10_F NXPV (Nsf Xylem Plani... 192 3e-048
gb|BQ696409.1|BQ696409 NXPV_040_G09_F NXPV (Nsf Xylem Plani... 187 1e-046
gb|BG319312.1|BG319312 NXPV_026_D07_F NXPV (Nsf Xylem Plani... 182 2e-045
gb|DR024075.1|DR024075 STRS1_62_C08.b1_A034 Shoot tip pitch... 149 9e-040
gb|DR168264.1|DR168264 RTPHOS1_24_F12.b1_A029 Roots minus p... 65 1e-037
gb|DR024213.1|DR024213 STRS1_63_D04.b1_A034 Shoot tip pitch... 124 2e-032
gb|AW758562.1|AW758562 NXNV_085_E08_F Nsf Xylem Normal wood... 132 3e-030
gb|CO165868.1|CO165868 FLD1_57_E04.g1_A029 Root flooded Pin... 106 3e-027
gb|DR025587.1|DR025587 STRS1_72_B09.g1_A034 Shoot tip pitch... 91 2e-022
gb|BQ698408.1|BQ698408 NXPV_069_E09_F NXPV (Nsf Xylem Plani... 106 2e-022
gb|CO364393.1|CO364393 RTK1_15_A08.g1_A029 Roots minus pota... 89 6e-022
gb|BX253603.1|BX253603 BX253603 Pinus pinaster differenciat... 101 6e-021
>gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 3', mRNA sequence
Length = 788
Score = 313 bits (678), Expect(3) = 1e-088
Identities = 127/178 (71%), Positives = 148/178 (83%)
Frame = +2 / -3
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
ER DRSD LTLD+IR+ LIR EDSIIF LLERAQFC+NA TYD++ F GF GSLVE++
Sbjct: 723 ERFDRSDTLTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYDASQFPFPGFVGSLVEFM 544
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+ETEKLH++VGRYKSPDEHPFF +DL EP LPP+QYP+VLHP A +ININKEIW MYF
Sbjct: 543 FKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFV 364
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
ELLPR+ G DGN GS+A+CD CLQA+SRRIHYGKFVAEAKF++S + Y PAI AQ
Sbjct: 363 ELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQ 190
Score = 201 bits (434), Expect = 5e-051
Identities = 100/177 (56%), Positives = 118/177 (66%)
Frame = -2 / +2
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A +AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P+ G +S+KY
Sbjct: 194 ARIAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKY 373
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYS 403
I QISL +LI A GC T GYC GG++GS RS K GCSSGLLYLPT SFSVSL + S
Sbjct: 374 IVQISLFMLILEAAGCSTCGYCKGGSKGSCRSSGKNGCSSGLLYLPTFE*SFSVSLNMNS 553
Query: 402 TKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRSTLS 232
T+DP KP S V AL QN ALS+R MMLSS L++ L++S V +SL S S
Sbjct: 554 TRDPTKPGNGNWEAS*VGALKQNWALSRRLKMMLSSCLMRDSLIVSRVRVSLLSKRS 724
Score = 29.9 bits (59), Expect(3) = 1e-088
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / -3
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 66 PVYKIQPSLIAGLY 25
Score = 23.1 bits (44), Expect(3) = 1e-088
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / -3
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 129 RVELKTMTYGQEVNL 85
>gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD90 3' end, mRNA sequence
Length = 842
Score = 309 bits (669), Expect(3) = 3e-087
Identities = 125/177 (70%), Positives = 146/177 (82%)
Frame = +2 / +1
Query: 236 RVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIV 415
R DRSD LTLD+IR+ LIR EDSIIF LLERAQFC+NA TYD++ F GF GSLVE++
Sbjct: 22 RFDRSDTLTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYDASQFPFPGFVGSLVEFMF 201
Query: 416 RETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDE 595
+ETEKLH++VGRYKSPDEHPFF +DL EP LPP+QYP+VLHP A +ININKEIW MYF E
Sbjct: 202 KETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVE 381
Query: 596 LLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
LLPR+ G DGN GS+A+CD CLQA+SRRIHYGKFVAEAKF++S + Y PAI Q
Sbjct: 382 LLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRVQ 552
Score = 199 bits (429), Expect = 2e-050
Identities = 97/172 (56%), Positives = 116/172 (67%)
Frame = -2 / -1
Query: 756 MAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKYIF 577
+AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P+ G +S+KYI
Sbjct: 542 IAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKYIV 363
Query: 576 QISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTK 397
QISL +LI A GC T GYC GG++GS +S K GCSSGLLYLPT SFSVSL + ST+
Sbjct: 362 QISLFMLILEAAGCSTCGYCKGGSKGSCKSSGKNGCSSGLLYLPTFE*SFSVSLNMNSTR 183
Query: 396 DPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
DP KP S V AL QN ALS+R MMLSS L++ L++S V +SL S
Sbjct: 182 DPTKPGNGNWEAS*VGALKQNWALSRRLKMMLSSCLMRDSLIVSRVRVSLLS 27
Score = 29.9 bits (59), Expect(3) = 3e-087
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 676 PVYKIQPSLIAGLY 717
Score = 23.1 bits (44), Expect(3) = 3e-087
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 613 RVELKTMTYGQEVNL 657
>gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO79 3' end, mRNA sequence
Length = 780
Score = 298 bits (645), Expect(3) = 5e-084
Identities = 120/170 (70%), Positives = 141/170 (82%)
Frame = +2 / +1
Query: 257 LTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLH 436
LTLD+IR+ LIR EDSIIF LLERAQFC+NA TYD++ F GF GSLVE++ +ETEKLH
Sbjct: 4 LTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYDASQFPFPGFVGSLVEFMFKETEKLH 183
Query: 437 AQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDELLPRLVK 616
++VGRYKSPDEHPFF +DL EP LPP+QYP+VLHP A +ININKEIW MYF ELLPR+
Sbjct: 184 SKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVELLPRIAA 363
Query: 617 EGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
G DGN GS+A+CD CLQA+SRRIHYGKFVAEAKF++S + Y PAI Q
Sbjct: 364 VGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRVQ 513
Score = 194 bits (418), Expect = 8e-049
Identities = 94/166 (56%), Positives = 112/166 (67%)
Frame = -2 / -2
Query: 756 MAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKYIF 577
+AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P+ G +S+KYI
Sbjct: 503 IAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKYIV 324
Query: 576 QISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTK 397
QISL +LI A GC T GYC GG++GS +S K GCSSGLLYLPT SFSVSL + ST+
Sbjct: 323 QISLFMLILEAAGCSTCGYCKGGSKGSCKSSGKNGCSSGLLYLPTFE*SFSVSLNMNSTR 144
Query: 396 DPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNV 259
DP KP S V AL QN ALS+R MMLSS L++ L++S V
Sbjct: 143 DPTKPGNGNWEAS*VGALKQNWALSRRLKMMLSSCLMRDSLIVSRV 6
Score = 29.9 bits (59), Expect(3) = 5e-084
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 637 PVYKIQPSLIAGLY 678
Score = 23.1 bits (44), Expect(3) = 5e-084
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 574 RVELKTMTYGQEVNL 618
>gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 5', mRNA sequence
Length = 735
Score = 298 bits (645), Expect(3) = 5e-084
Identities = 120/169 (71%), Positives = 141/169 (83%)
Frame = +2 / +3
Query: 260 TLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHA 439
TLD+IR+ LIR EDSIIF LLERAQFC+NA TYD++ F GF GSLVE++ +ETEKLH+
Sbjct: 3 TLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYDASQFPFPGFVGSLVEFMFKETEKLHS 182
Query: 440 QVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDELLPRLVKE 619
+VGRYKSPDEHPFF +DL EP LPP+QYP+VLHP A +ININKEIW MYF ELLPR+
Sbjct: 183 KVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVELLPRIAAV 362
Query: 620 GSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
G DGN GS+A+CD CLQA+SRRIHYGKFVAEAKF++S + Y PAI AQ
Sbjct: 363 GDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQ 509
Score = 196 bits (422), Expect = 2e-049
Identities = 96/168 (57%), Positives = 113/168 (67%)
Frame = -2 / -3
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A +AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P+ G +S+KY
Sbjct: 505 ARIAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKY 326
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYS 403
I QISL +LI A GC T GYC GG++GS RS K GCSSGLLYLPT SFSVSL + S
Sbjct: 325 IVQISLFMLILEAAGCSTCGYCKGGSKGSCRSSGKNGCSSGLLYLPTFE*SFSVSLNMNS 146
Query: 402 TKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNV 259
T+DP KP S V AL QN ALS+R MMLSS L++ L++S V
Sbjct: 145 TRDPTKPGNGNWEAS*VGALKQNWALSRRLKMMLSSCLMRDSLIVSRV 2
Score = 29.9 bits (59), Expect(3) = 5e-084
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 633 PVYKIQPSLIAGLY 674
Score = 23.1 bits (44), Expect(3) = 5e-084
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 570 RVELKTMTYGQEVNL 614
>gb|DR069285.1|DR069285 RTDK1_6_E03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_E03_A029 3', mRNA sequence
Length = 879
Score = 310 bits (671), Expect = 1e-083
Identities = 130/186 (69%), Positives = 146/186 (78%)
Frame = +2 / -1
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 588 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFI 409
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW MY+D
Sbjct: 408 LRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYD 229
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQGG 772
LLPR G DGN GS+A+CDT CLQALS+RIHYGKFVAEAKF+ SPE Y AI AQ
Sbjct: 228 SLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDK 49
Query: 773 GQSQDL 790
Q +L
Sbjct: 48 EQLMNL 31
Score = 202 bits (435), Expect = 3e-051
Identities = 101/175 (57%), Positives = 118/175 (67%)
Frame = -2 / +2
Query: 765 WAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSK 586
WA +A +SG+ NLASATNFP* ILLE ACK +VSQ A+DP LPS P N G S
Sbjct: 56 WARIATSYSSGEPLNLASATNFP*CILLERACKHMVSQTAVDP*LPSSPVVANRGSKLS* 235
Query: 585 YIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIY 406
YI QISL +LI+ A GC T GYC GG++GSG++ K GCSSGLLYLPT AWS SVSL++
Sbjct: 236 YILQISLFMLID*AAGCNTGGYCNGGSKGSGKASGKNGCSSGLLYLPTLAWSISVSLSMN 415
Query: 405 STKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
S +P P M KAL S V L*Q ALS+R MMLSS I+ +LS V L S
Sbjct: 416 SISEPLNPGMVKALAS*VGPL*QYWALSRRLKMMLSS*RIRE*RILSKVRFLLIS 580
Score = 113 bits (242), Expect = 1e-024
Identities = 55/124 (44%), Positives = 79/124 (63%)
Frame = -1 / +1
Query: 604 WKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELF 425
WK+ I IH PN F+ +DR+S G+Q+ WVL + G+ + KE + IWA VS + ME F
Sbjct: 217 WKQAIIIHTPNQFIYVDRLSCGVQHRWVL*WRE*GVW*SIRKEWMFIWAFVSAHFGMEYF 396
Query: 424 SFSNYIFNQRSSKTIHVESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTS 245
FS Y F +R++++ H ESI I+ +IVT L SLQK + DAV ++Q ++D +Q Q
Sbjct: 397 GFSEYEFYKRATESRHGESIGIVSGAIVTVLGSLQKVENDAVLLTDQRITDTVQGQVFAH 576
Query: 244 INPL 233
I PL
Sbjct: 577 I*PL 588
Score = 63.4 bits (132), Expect(2) = 2e-021
Identities = 30/74 (40%), Positives = 41/74 (55%)
Frame = +1 / -3
Query: 259 DIG*HQTSFD*TRRQHHIWPFGESTVLLQC*YI**QCFPHGWFWRIFG*IYS*RN*KAPC 438
D+G + D +R QHH P GES +LLQ ++ QCF H W + I++ RN PC
Sbjct: 562 DLGQYPLFSDPSRGQHHFQPSGESPILLQWPHLRCQCFHHAWIQWLAYRIHTQRNRNTPC 383
Query: 439 TGWEIQEPR*APFL 480
+IQ+PR* L
Sbjct: 382 QSGQIQKPR*TSIL 341
Score = 59.3 bits (123), Expect(2) = 2e-021
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = +1 / -3
Query: 520 IPKGFASHC*FYQYQQRDLENVF**TSSKIGERRK*W*CWIQCSL*HNLLAGTLQKDPLW 699
IP G A YQ++ DLE V ** +S + +*W W+ CSL*+++ AG QKD L
Sbjct: 301 IPTGVAPRSSVYQHK*TDLEYVL**LASTVCYHGR*WQLWVNCSL*YHVFAGPFQKDTLR 122
Query: 700 EVC 708
++C
Sbjct: 121 KIC 113
>gb|CO162312.1|CO162312 FLD1_34_B10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_B10_A029 5', mRNA sequence
Length = 827
Score = 306 bits (662), Expect = 2e-082
Identities = 126/175 (72%), Positives = 141/175 (80%)
Frame = +2 / +3
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 303 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFI 482
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW MY+D
Sbjct: 483 LRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYD 662
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAI 757
LLPR G DGN GS+A+CDT CLQALS+RIHYGKFVAEAKF+ SPE Y AI
Sbjct: 663 SLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAI 827
Score = 198 bits (426), Expect = 6e-050
Identities = 98/167 (58%), Positives = 114/167 (68%)
Frame = -2 / -2
Query: 741 ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKYIFQISLL 562
+SG+ NLASATNFP* ILLE ACK +VSQ A+DP LPS P N G S YI QISL
Sbjct: 811 SSGEPLNLASATNFP*CILLERACKHMVSQTAVDP*LPSSPVVANRGSKLS*YILQISLF 632
Query: 561 ILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPPKP 382
+LI+ A GC T GYC GG++GSG++ K GCSSGLLYLPT AWS SVSL++ S +P P
Sbjct: 631 MLID*AAGCNTGGYCNGGSKGSGKASGKNGCSSGLLYLPTLAWSISVSLSMNSISEPLNP 452
Query: 381 SMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
M KAL S V L*Q ALS+R MMLSS I+ +LS V L S
Sbjct: 451 GMVKALAS*VGPL*QYWALSRRLKMMLSS*RIRE*RILSKVRFLLIS 311
Score = 113 bits (242), Expect = 1e-024
Identities = 55/124 (44%), Positives = 79/124 (63%)
Frame = -1 / -1
Query: 604 WKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELF 425
WK+ I IH PN F+ +DR+S G+Q+ WVL + G+ + KE + IWA VS + ME F
Sbjct: 674 WKQAIIIHTPNQFIYVDRLSCGVQHRWVL*WRE*GVW*SIRKEWMFIWAFVSAHFGMEYF 495
Query: 424 SFSNYIFNQRSSKTIHVESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTS 245
FS Y F +R++++ H ESI I+ +IVT L SLQK + DAV ++Q ++D +Q Q
Sbjct: 494 GFSEYEFYKRATESRHGESIGIVSGAIVTVLGSLQKVENDAVLLTDQRITDTVQGQVFAH 315
Query: 244 INPL 233
I PL
Sbjct: 314 I*PL 303
Score = 63.4 bits (132), Expect(2) = 2e-021
Identities = 30/74 (40%), Positives = 41/74 (55%)
Frame = +1 / +2
Query: 259 DIG*HQTSFD*TRRQHHIWPFGESTVLLQC*YI**QCFPHGWFWRIFG*IYS*RN*KAPC 438
D+G + D +R QHH P GES +LLQ ++ QCF H W + I++ RN PC
Sbjct: 329 DLGQYPLFSDPSRGQHHFQPSGESPILLQWPHLRCQCFHHAWIQWLAYRIHTQRNRNTPC 508
Query: 439 TGWEIQEPR*APFL 480
+IQ+PR* L
Sbjct: 509 QSGQIQKPR*TSIL 550
Score = 59.3 bits (123), Expect(2) = 2e-021
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = +1 / +2
Query: 520 IPKGFASHC*FYQYQQRDLENVF**TSSKIGERRK*W*CWIQCSL*HNLLAGTLQKDPLW 699
IP G A YQ++ DLE V ** +S + +*W W+ CSL*+++ AG QKD L
Sbjct: 590 IPTGVAPRSSVYQHK*TDLEYVL**LASTVCYHGR*WQLWVNCSL*YHVFAGPFQKDTLR 769
Query: 700 EVC 708
++C
Sbjct: 770 KIC 778
>gb|DR685785.1|DR685785 EST1075862 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB785 3' end, mRNA sequence
Length = 784
Score = 306 bits (662), Expect = 2e-082
Identities = 127/178 (71%), Positives = 143/178 (80%)
Frame = +2 / +2
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF + GF GSL+E+I
Sbjct: 218 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNDPTYDANAFTVPGFSGSLIEFI 397
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW MY+D
Sbjct: 398 LRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYD 577
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
LLPR G DGN GS+A+CDT CLQALS+RIHYGKFVAEAKF+ SPE Y AI AQ
Sbjct: 578 SLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQ 751
Score = 200 bits (431), Expect = 1e-050
Identities = 100/175 (57%), Positives = 118/175 (67%)
Frame = -2 / -2
Query: 765 WAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSK 586
WA +A +SG+ NLASATNFP* ILLE ACK +VSQ A+DP LPS P N G S
Sbjct: 750 WARIATSYSSGEPLNLASATNFP*CILLERACKHMVSQTAVDP*LPSSPVVANRGSKLS* 571
Query: 585 YIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIY 406
YI QISL +LI+ A GC T GYC GG++GSG++ K GCSSGLLYLPT AWS SVSL++
Sbjct: 570 YILQISLFMLID*AAGCNTGGYCNGGSKGSGKASGKNGCSSGLLYLPTLAWSISVSLSMN 391
Query: 405 STKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
S +P P KAL S V +L*Q ALS+R MMLSS I+ +LS V L S
Sbjct: 390 SISEPLNPGTVKALAS*VGSL*QYWALSRRLKMMLSS*RIRE*RILSKVRFLLIS 226
Score = 111 bits (236), Expect = 1e-023
Identities = 55/124 (44%), Positives = 77/124 (62%)
Frame = -1 / -1
Query: 604 WKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELF 425
WK+ I IH PN F+ +DR+S G+Q+ WVL + G+ + KE + IWA VS + ME F
Sbjct: 589 WKQAIIIHTPNQFIYVDRLSCGVQHRWVL*WRE*GVW*SIRKEWMFIWAFVSAHFGMEYF 410
Query: 424 SFSNYIFNQRSSKTIHVESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTS 245
FS Y F +R++++ H ESI I+ IVT L SLQK + DAV + Q ++D +Q Q
Sbjct: 409 GFSEYEFYKRATESRHGESIGIVSGVIVTVLGSLQKVENDAVLLTYQRITDTVQGQVFAH 230
Query: 244 INPL 233
I PL
Sbjct: 229 I*PL 218
>gb|DT632919.1|DT632919 EST1147850 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFP19 3' end, mRNA sequence
Length = 791
Score = 306 bits (662), Expect = 2e-082
Identities = 127/178 (71%), Positives = 143/178 (80%)
Frame = +2 / +1
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF + GF GSL+E+I
Sbjct: 226 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNDPTYDANAFTVPGFSGSLIEFI 405
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW MY+D
Sbjct: 406 LRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYD 585
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
LLPR G DGN GS+A+CDT CLQALS+RIHYGKFVAEAKF+ SPE Y AI AQ
Sbjct: 586 SLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQ 759
Score = 200 bits (431), Expect = 1e-050
Identities = 100/175 (57%), Positives = 118/175 (67%)
Frame = -2 / -1
Query: 765 WAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSK 586
WA +A +SG+ NLASATNFP* ILLE ACK +VSQ A+DP LPS P N G S
Sbjct: 758 WARIATSYSSGEPLNLASATNFP*CILLERACKHMVSQTAVDP*LPSSPVVANRGSKLS* 579
Query: 585 YIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIY 406
YI QISL +LI+ A GC T GYC GG++GSG++ K GCSSGLLYLPT AWS SVSL++
Sbjct: 578 YILQISLFMLID*AAGCNTGGYCNGGSKGSGKASGKNGCSSGLLYLPTLAWSISVSLSMN 399
Query: 405 STKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
S +P P KAL S V +L*Q ALS+R MMLSS I+ +LS V L S
Sbjct: 398 SISEPLNPGTVKALAS*VGSL*QYWALSRRLKMMLSS*RIRE*RILSKVRFLLIS 234
Score = 111 bits (236), Expect = 1e-023
Identities = 55/124 (44%), Positives = 77/124 (62%)
Frame = -1 / -3
Query: 604 WKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELF 425
WK+ I IH PN F+ +DR+S G+Q+ WVL + G+ + KE + IWA VS + ME F
Sbjct: 597 WKQAIIIHTPNQFIYVDRLSCGVQHRWVL*WRE*GVW*SIRKEWMFIWAFVSAHFGMEYF 418
Query: 424 SFSNYIFNQRSSKTIHVESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTS 245
FS Y F +R++++ H ESI I+ IVT L SLQK + DAV + Q ++D +Q Q
Sbjct: 417 GFSEYEFYKRATESRHGESIGIVSGVIVTVLGSLQKVENDAVLLTYQRITDTVQGQVFAH 238
Query: 244 INPL 233
I PL
Sbjct: 237 I*PL 226
>gb|DR024254.1|DR024254 STRS1_63_D04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_D04_A034 5', mRNA sequence
Length = 749
Score = 304 bits (659), Expect = 4e-082
Identities = 123/175 (70%), Positives = 145/175 (82%)
Frame = +2 / +3
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
ER DRSD LTLD+IR+ LIR EDSIIF LLERAQFC+NA TYD++ F GF GSLVE++
Sbjct: 222 ERFDRSDTLTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYDASQFPFPGFVGSLVEFM 401
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+ETEKLH++VGRYKSPDEHPFF +DL EP LPP+QYP+VLHP A +ININKEIW MYF
Sbjct: 402 FKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFV 581
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAI 757
ELLPR+ G DGN GS+A+CD CLQA+SR+IHYGKFVAEAKF++S + Y AI
Sbjct: 582 ELLPRIAAVGDDGNYGSTAVCDVACLQAISRKIHYGKFVAEAKFRDSSKEYELAI 746
Score = 198 bits (427), Expect = 4e-050
Identities = 96/167 (57%), Positives = 112/167 (67%)
Frame = -2 / -2
Query: 732 DS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKYIFQISLLILI 553
+S N ASATNFP*WI LE ACKQ S A+DP PS P+ G +S+KYI QISL +LI
Sbjct: 721 ESRNFASATNFP*WIFLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKYIVQISLFMLI 542
Query: 552 ESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPPKPSMW 373
A GC T GYC GG++GS RS K GCSSGLLYLPT SFSVSL + ST+DP KP
Sbjct: 541 LEAAGCSTCGYCKGGSKGSCRSSGKNGCSSGLLYLPTFE*SFSVSLNMNSTRDPTKPGNG 362
Query: 372 KALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRSTLS 232
S V AL QN ALS+R MMLSS L++ L++S V +SL S S
Sbjct: 361 NWEAS*VGALKQNWALSRRLKMMLSSCLMRDSLIVSRVRVSLLSKRS 221
>gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 5', mRNA sequence
Length = 766
Score = 286 bits (620), Expect(3) = 1e-080
Identities = 115/161 (71%), Positives = 134/161 (83%)
Frame = +2 / +2
Query: 284 LIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHAQVGRYKSP 463
LIR EDSIIF LLERAQFC+NA TYD++ F GF GSLVE++ +ETEKLH++VGRYKSP
Sbjct: 5 LIRQEDSIIFNLLERAQFCFNAPTYDASQFPFPGFVGSLVEFMFKETEKLHSKVGRYKSP 184
Query: 464 DEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDELLPRLVKEGSDGNAGS 643
DEHPFF +DL EP LPP+QYP+VLHP A +ININKEIW MYF ELLPR+ G DGN GS
Sbjct: 185 DEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGS 364
Query: 644 SALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
+A+CD CLQA+SRRIHYGKFVAEAKF++S + Y PAI AQ
Sbjct: 365 TAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQ 487
Score = 190 bits (410), Expect = 1e-047
Identities = 93/160 (58%), Positives = 108/160 (67%)
Frame = -2 / -2
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A +AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P+ G +S+KY
Sbjct: 483 ARIAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKY 304
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYS 403
I QISL +LI A GC T GYC GG++GS RS K GCSSGLLYLPT SFSVSL + S
Sbjct: 303 IVQISLFMLILEAAGCSTCGYCKGGSKGSCRSSGKNGCSSGLLYLPTFE*SFSVSLNMNS 124
Query: 402 TKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIK 283
T+DP KP S V AL QN ALS+R MMLSS L++
Sbjct: 123 TRDPTKPGNGNWEAS*VGALKQNWALSRRLKMMLSSCLMR 4
Score = 29.9 bits (59), Expect(3) = 1e-080
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 611 PVYKIQPSLIAGLY 652
Score = 23.1 bits (44), Expect(3) = 1e-080
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 548 RVELKTMTYGQEVNL 592
>gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088F04, mRNA sequence
Length = 660
Score = 284 bits (614), Expect(3) = 8e-080
Identities = 113/159 (71%), Positives = 132/159 (83%)
Frame = +2 / +2
Query: 296 EDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHAQVGRYKSPDEHP 475
EDSIIF LLERAQFC+NA TYD++ F GF GSLVE++ +ETEKLH++VGRYKSPDEHP
Sbjct: 2 EDSIIFNLLERAQFCFNAPTYDASQFPFPGFVGSLVEFMFKETEKLHSKVGRYKSPDEHP 181
Query: 476 FFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDELLPRLVKEGSDGNAGSSALC 655
FF +DL EP LPP+QYP+VLHP A +ININKEIW MYF ELLPR+ G DGN GS+A+C
Sbjct: 182 FFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVELLPRIAAMGDDGNYGSTAVC 361
Query: 656 DTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQGG 772
D CLQA+SRRIHYGKFVAEAKF++S + Y PAI AQ G
Sbjct: 362 DVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQDG 478
Score = 193 bits (417), Expect = 1e-048
Identities = 94/159 (59%), Positives = 106/159 (66%)
Frame = -2 / -1
Query: 771 PPWAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSS 592
P A +AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P G +S
Sbjct: 477 PSCARIAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPMAAIRGSNS 298
Query: 591 SKYIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLT 412
+KYI QISL +LI A GC T GYC GG++GS RS K GCSSGLLYLPT SFSVSL
Sbjct: 297 TKYIVQISLFMLILEAAGCSTCGYCKGGSKGSCRSSGKNGCSSGLLYLPTFE*SFSVSLN 118
Query: 411 IYSTKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSS 295
+ ST+DP KP SYV AL QN ALS+R MMLSS
Sbjct: 117 MNSTRDPTKPGNGNWEASYVGALKQNWALSRRLKMMLSS 1
Score = 29.9 bits (59), Expect(3) = 8e-080
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 596 PVYKIQPSLIAGLY 637
Score = 23.1 bits (44), Expect(3) = 8e-080
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 533 RVELKTMTYGQEVNL 577
>gb|DR095848.1|DR095848 STRR1_24_B06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_24_B06_A033 3', mRNA sequence
Length = 779
Score = 288 bits (623), Expect = 4e-077
Identities = 118/162 (72%), Positives = 132/162 (81%)
Frame = +2 / -1
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 488 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNDPTYDANAFTMPGFSGSLIEFI 309
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW MY+D
Sbjct: 308 LRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYD 129
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEA 718
LLPR G DGN GS+A+CDT CLQALS+RIHYGKFVAEA
Sbjct: 128 SLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEA 3
Score = 192 bits (414), Expect = 3e-048
Identities = 95/160 (59%), Positives = 110/160 (68%)
Frame = -2 / +1
Query: 720 LASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKYIFQISLLILIESAM 541
LASATNFP* ILLE ACK +VSQ A+DP LPS P N G S YI QISL +LI+ A
Sbjct: 1 LASATNFP*CILLERACKHMVSQTAVDP*LPSSPVVANRGSKLS*YILQISLFMLID*AA 180
Query: 540 GCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPPKPSMWKALL 361
GC T GYC GG++GSG++ K GCSSGLLYLPT AWS SVSL++ S +P P M KAL
Sbjct: 181 GCNTGGYCNGGSKGSGKASGKNGCSSGLLYLPTLAWSISVSLSMNSISEPLNPGMVKALA 360
Query: 360 SYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
S V +L*Q ALS+R MMLSS I+ +LS V L S
Sbjct: 361 S*VGSL*QYWALSRRLKMMLSS*RIRE*RILSKVRFLLIS 480
Score = 111 bits (236), Expect = 1e-023
Identities = 55/124 (44%), Positives = 77/124 (62%)
Frame = -1 / +3
Query: 604 WKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELF 425
WK+ I IH PN F+ +DR+S G+Q+ WVL + G+ + KE + IWA VS + ME F
Sbjct: 117 WKQAIIIHTPNQFIYVDRLSCGVQHRWVL*WRE*GVW*SIRKEWMFIWAFVSAHFGMEYF 296
Query: 424 SFSNYIFNQRSSKTIHVESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTS 245
FS Y F +R++++ H ESI I+ IVT L SLQK + DAV + Q ++D +Q Q
Sbjct: 297 GFSEYEFYKRATESRHGESIGIVSGVIVTVLGSLQKVENDAVLLTYQRITDTVQGQVFAH 476
Query: 244 INPL 233
I PL
Sbjct: 477 I*PL 488
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 30/74 (40%), Positives = 41/74 (55%)
Frame = +1 / -3
Query: 259 DIG*HQTSFD*TRRQHHIWPFGESTVLLQC*YI**QCFPHGWFWRIFG*IYS*RN*KAPC 438
D+G + D +R QHH P GES +LLQ ++ QCF H W + I++ RN PC
Sbjct: 462 DLGQYPLFSDTSRGQHHFQPSGESPILLQ*PHLRCQCFHHAWIQWLAYRIHTQRNRNTPC 283
Query: 439 TGWEIQEPR*APFL 480
+IQ+PR* L
Sbjct: 282 QSGQIQKPR*TSIL 241
Score = 59.3 bits (123), Expect(2) = 4e-021
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = +1 / -3
Query: 520 IPKGFASHC*FYQYQQRDLENVF**TSSKIGERRK*W*CWIQCSL*HNLLAGTLQKDPLW 699
IP G A YQ++ DLE V ** +S + +*W W+ CSL*+++ AG QKD L
Sbjct: 201 IPTGVAPRSSVYQHK*TDLEYVL**LASTVCYHGR*WQLWVNCSL*YHVFAGPFQKDTLR 22
Query: 700 EVC 708
++C
Sbjct: 21 KIC 13
>gb|CF667838.1|CF667838 RTCNT1_32_G06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_32_G06_A029 5', mRNA sequence
Length = 781
Score = 262 bits (567), Expect(2) = 2e-076
Identities = 107/151 (70%), Positives = 121/151 (80%)
Frame = +2 / +3
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 258 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFI 437
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW MY+D
Sbjct: 438 LRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYD 617
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCLQALSR 685
LLPR G DGN GS+A+CDT CLQALS+
Sbjct: 618 SLLPRFATTGDDGNYGSTAVCDTMCLQALSK 710
Score = 170 bits (365), Expect(2) = 1e-044
Identities = 84/148 (56%), Positives = 98/148 (66%)
Frame = -2 / -1
Query: 684 LESACKQVVSQRALDPALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIGGN 505
LE ACK +VSQ A+DP LPS P N G S YI QISL +LI+ A GC T GYC GG+
Sbjct: 709 LERACKHMVSQTAVDP*LPSSPVVANRGSKLS*YILQISLFMLID*AAGCNTGGYCNGGS 530
Query: 504 RGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPPKPSMWKALLSYVSAL*QNCAL 325
+GSG++ K GCSSGLLYLPT AWS SVSL++ S +P P M KAL S V L*Q AL
Sbjct: 529 KGSGKASGKNGCSSGLLYLPTLAWSISVSLSMNSISEPLNPGMVKALAS*VGPL*QYWAL 350
Query: 324 SKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
S+R MMLSS I+ +LS V L S
Sbjct: 349 SRRLKMMLSS*RIRE*RILSKVRFLLIS 266
Score = 113 bits (242), Expect = 1e-024
Identities = 55/124 (44%), Positives = 79/124 (63%)
Frame = -1 / -3
Query: 604 WKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELF 425
WK+ I IH PN F+ +DR+S G+Q+ WVL + G+ + KE + IWA VS + ME F
Sbjct: 629 WKQAIIIHTPNQFIYVDRLSCGVQHRWVL*WRE*GVW*SIRKEWMFIWAFVSAHFGMEYF 450
Query: 424 SFSNYIFNQRSSKTIHVESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTS 245
FS Y F +R++++ H ESI I+ +IVT L SLQK + DAV ++Q ++D +Q Q
Sbjct: 449 GFSEYEFYKRATESRHGESIGIVSGAIVTVLGSLQKVENDAVLLTDQRITDTVQGQVFAH 270
Query: 244 INPL 233
I PL
Sbjct: 269 I*PL 258
Score = 44.6 bits (91), Expect(2) = 2e-076
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2 / +2
Query: 683 RRIHYGKFVAEAKFQESPEAY 745
+RIHYGKFVAEAKF+ SPE Y
Sbjct: 707 QRIHYGKFVAEAKFRGSPELY 769
Score = 30.9 bits (61), Expect(2) = 1e-044
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2 / -2
Query: 741 ASGDS*NLASATNFP*WIL 685
+SG+ NLASATNFP* IL
Sbjct: 765 SSGEPLNLASATNFP*CIL 709
>gb|BQ701847.1|BQ701847 NXSI_121_C04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_121_C04 5' similar to Arabidopsis thaliana
sequence At3g29200 chorismate mutase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 551
Score = 284 bits (614), Expect = 7e-076
Identities = 120/178 (67%), Positives = 135/178 (75%)
Frame = +2 / +3
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 18 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNDPTYDANAFTMPGFSGSLIEFI 197
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW MY+D
Sbjct: 198 LRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYD 377
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
LL G DGN GS+A+CDT LS+ HYGKFVAEAKF+ SPE Y AI AQ
Sbjct: 378 SLLXXXAXTGDDGNYGSTAVCDTMXXXXLSKXXHYGKFVAEAKFRXSPELYEVAIRAQ 551
Score = 185 bits (398), Expect = 4e-046
Identities = 95/175 (54%), Positives = 113/175 (64%)
Frame = -2 / -2
Query: 765 WAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSK 586
WA +A +SG+ NLASATNFP* LLE +VSQ A+DP LPS P S
Sbjct: 550 WARIATSYSSGEXLNLASATNFP*CXLLERXXXXMVSQTAVDP*LPSSPVXAXXXSKLS* 371
Query: 585 YIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIY 406
YI QISL +LI+ A GC T GYC GG++GSG++ K GCSSGLLYLPT AWS SVSL++
Sbjct: 370 YILQISLFMLID*AAGCNTGGYCNGGSKGSGKASGKNGCSSGLLYLPTLAWSISVSLSMN 191
Query: 405 STKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
S +P P M KAL S V +L*Q ALS+R MMLSS I+ +LS V L S
Sbjct: 190 SISEPLNPGMVKALAS*VGSL*QYWALSRRLKMMLSS*RIRE*RILSKVRFLLIS 26
Score = 105 bits (225), Expect = 3e-022
Identities = 54/123 (43%), Positives = 76/123 (61%)
Frame = -1 / -1
Query: 601 KKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELFS 422
K+ I IH PN F+ +DR+S G+Q+ WVL + G+ + KE + IWA VS + ME F
Sbjct: 386 KQAIIIHTPNQFIYVDRLSCGVQHRWVL*WRE*GVW*SIRKEWMFIWAFVSAHFGMEYFG 207
Query: 421 FSNYIFNQRSSKTIHVESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTSI 242
FS Y F +R++++ H ESI I+ IVT L SLQK + DAV + Q ++D +Q Q I
Sbjct: 206 FSEYEFYKRATESRHGESIGIVSGVIVTVLGSLQKVENDAVLLTYQRITDTVQGQVFAHI 27
Query: 241 NPL 233
PL
Sbjct: 26 *PL 18
>gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_F05_A021 5', mRNA sequence
Length = 710
Score = 264 bits (572), Expect(3) = 5e-074
Identities = 104/148 (70%), Positives = 123/148 (83%)
Frame = +2 / +2
Query: 323 ERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHAQVGRYKSPDEHPFFSKDLPEP 502
ERAQFC+NA TYD++ F GF GSLVE++ +ETEKLH++VGRYKSPDEHPFF +DL EP
Sbjct: 2 ERAQFCFNAPTYDASQFPFPGFVGSLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEP 181
Query: 503 RLPPMQYPRVLHPIADSININKEIWKMYFDELLPRLVKEGSDGNAGSSALCDTTCLQALS 682
LPP+QYP+VLHP A +ININKEIW MYF ELLPR+ G DGN GS+A+CD CLQA+S
Sbjct: 182 LLPPLQYPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAIS 361
Query: 683 RRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
RRIHYGKFVAEAKF++S + Y PAI AQ
Sbjct: 362 RRIHYGKFVAEAKFRDSSKEYEPAIRAQ 445
Score = 176 bits (378), Expect = 3e-043
Identities = 86/147 (58%), Positives = 98/147 (66%)
Frame = -2 / -3
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A +AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P+ G +S+KY
Sbjct: 441 ARIAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKY 262
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYS 403
I QISL +LI A GC T GYC GG++GS RS K GCSSGLLYLPT SFSVSL + S
Sbjct: 261 IVQISLFMLILEAAGCSTCGYCKGGSKGSCRSSGKNGCSSGLLYLPTFE*SFSVSLNMNS 82
Query: 402 TKDPPKPSMWKALLSYVSAL*QNCALS 322
T+DP KP S V AL QN ALS
Sbjct: 81 TRDPTKPGNGNWEAS*VGALKQNWALS 1
Score = 29.9 bits (59), Expect(3) = 5e-074
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 569 PVYKIQPSLIAGLY 610
Score = 23.1 bits (44), Expect(3) = 5e-074
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 506 RVELKTMTYGQEVNL 550
>gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_F04_A029 3', mRNA sequence
Length = 527
Score = 271 bits (586), Expect = 5e-072
Identities = 108/155 (69%), Positives = 128/155 (82%)
Frame = +2 / -3
Query: 302 SIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHAQVGRYKSPDEHPFF 481
SIIF LLERAQFC++A TYD++ F GF GSL E++ +ETEKLH++VGRYKSPDEHPFF
Sbjct: 525 SIIFDLLERAQFCFDAPTYDASQFPFPGFMGSLNEFMFKETEKLHSEVGRYKSPDEHPFF 346
Query: 482 SKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDELLPRLVKEGSDGNAGSSALCDT 661
+DL EP LPP+QYP+VLHP A +ININKEIW MYF ELLPR+ G DGN GS+A+CD
Sbjct: 345 PEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDV 166
Query: 662 TCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
CLQA+SRRIHYGKFVAEAKF++S + Y PAI AQ
Sbjct: 165 ACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQ 61
Score = 179 bits (386), Expect = 2e-044
Identities = 88/154 (57%), Positives = 101/154 (65%)
Frame = -2 / +2
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A +AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P+ G +S+KY
Sbjct: 65 ARIAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKY 244
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYS 403
I QISL +LI A GC T GYC GG++GS RS K GCSSGLLYLPT SFSVSL + S
Sbjct: 245 IVQISLFMLILEAAGCSTCGYCKGGSKGSCRSSGKNGCSSGLLYLPTSE*SFSVSLNMNS 424
Query: 402 TKDPPKPSMWKALLSYVSAL*QNCALSKRPNMML 301
+DP KP S V A QN ALS+R MML
Sbjct: 425 LRDPMKPGNGNWEAS*VGASKQNWALSRRSKMML 526
>gb|DR054830.1|DR054830 RTCA1_19_G05.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_G05_A029 5', mRNA sequence
Length = 701
Score = 257 bits (556), Expect = 7e-068
Identities = 103/146 (70%), Positives = 120/146 (82%)
Frame = +2 / +2
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
ER DRSD LTLD+IR+ LIR EDSIIF LLERAQFC+NA TYD++ F GF GSLVE++
Sbjct: 263 ERFDRSDTLTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYDASQFPFPGFVGSLVEFM 442
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+ETEKLH++VGRYKSPDEHPFF +DL EP LPP+QYP+VLHP A +ININKEIW MYF
Sbjct: 443 FKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFV 622
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCL 670
ELLPR+ G DGN GS+A+CD CL
Sbjct: 623 ELLPRIAAVGDDGNYGSTAVCDVACL 700
Score = 161 bits (346), Expect = 7e-039
Identities = 80/146 (54%), Positives = 95/146 (65%)
Frame = -2 / -3
Query: 669 KQVVSQRALDPALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIGGNRGSGR 490
KQ S A+DP PS P+ G +S+KYI QISL +LI A GC T GYC GG++GS R
Sbjct: 699 KQATSHTAVDP*FPSSPTAAIRGSNSTKYIVQISLFMLILEAAGCSTCGYCKGGSKGSCR 520
Query: 489 SLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPPKPSMWKALLSYVSAL*QNCALSKRPN 310
S K GCSSGLLYLPT SFSVSL + ST+DP KP S V AL QN ALS+R
Sbjct: 519 SSGKNGCSSGLLYLPTFE*SFSVSLNMNSTRDPTKPGNGNWEAS*VGALKQNWALSRRLK 340
Query: 309 MMLSSSLIKTCLMLSNVNMSLRSTLS 232
MMLSS L++ L++S V +SL S S
Sbjct: 339 MMLSSCLMRDSLIVSRVRVSLLSKRS 262
>gb|CO197205.1|CO197205 GEO1_4_C10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_4_C10_A029 5', mRNA sequence
Length = 772
Score = 253 bits (548), Expect = 9e-067
Identities = 103/146 (70%), Positives = 116/146 (79%)
Frame = +2 / +2
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 335 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFI 514
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW MY+D
Sbjct: 515 LRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYD 694
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCL 670
LLPR G DGN GS+A+CDT CL
Sbjct: 695 SLLPRFATTGDDGNYGSTAVCDTMCL 772
Score = 160 bits (344), Expect = 1e-038
Identities = 80/143 (55%), Positives = 94/143 (65%)
Frame = -2 / -2
Query: 669 KQVVSQRALDPALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIGGNRGSGR 490
K +VSQ A+DP LPS P N G S YI QISL +LI+ A GC T GYC GG++GSG+
Sbjct: 771 KHMVSQTAVDP*LPSSPVVANRGSKLS*YILQISLFMLID*AAGCNTGGYCNGGSKGSGK 592
Query: 489 SLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPPKPSMWKALLSYVSAL*QNCALSKRPN 310
+ K GCSSGLLYLPT AWS SVSL++ S +P P M KAL S V L*Q ALS+R
Sbjct: 591 ASGKNGCSSGLLYLPTLAWSISVSLSMNSISEPLNPGMVKALAS*VGPL*QYWALSRRLK 412
Query: 309 MMLSSSLIKTCLMLSNVNMSLRS 241
MMLSS I+ +LS V L S
Sbjct: 411 MMLSS*RIRE*RILSKVRFLLIS 343
Score = 113 bits (242), Expect = 1e-024
Identities = 55/124 (44%), Positives = 79/124 (63%)
Frame = -1 / -1
Query: 604 WKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELF 425
WK+ I IH PN F+ +DR+S G+Q+ WVL + G+ + KE + IWA VS + ME F
Sbjct: 706 WKQAIIIHTPNQFIYVDRLSCGVQHRWVL*WRE*GVW*SIRKEWMFIWAFVSAHFGMEYF 527
Query: 424 SFSNYIFNQRSSKTIHVESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTS 245
FS Y F +R++++ H ESI I+ +IVT L SLQK + DAV ++Q ++D +Q Q
Sbjct: 526 GFSEYEFYKRATESRHGESIGIVSGAIVTVLGSLQKVENDAVLLTDQRITDTVQGQVFAH 347
Query: 244 INPL 233
I PL
Sbjct: 346 I*PL 335
>gb|CO366854.1|CO366854 RTK1_30_C03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_C03_A029 5', mRNA sequence
Length = 837
Score = 251 bits (543), Expect = 4e-066
Identities = 101/142 (71%), Positives = 118/142 (83%)
Frame = +2 / +3
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
ER DRSD LTLD+IR+ LIR EDSIIF LLERAQFC+NA TYD++ F GF GSLVE++
Sbjct: 411 ERFDRSDTLTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYDASQFPFPGFVGSLVEFM 590
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+ETEKLH++VGRYKSPDEHPFF +DL EP LPP+QYP+VLHP A +ININKEIW MYF
Sbjct: 591 FKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFV 770
Query: 593 ELLPRLVKEGSDGNAGSSALCD 658
ELLPR+ G DGN GS+A+CD
Sbjct: 771 ELLPRIAAVGDDGNYGSTAVCD 836
Score = 156 bits (336), Expect = 2e-037
Identities = 78/142 (54%), Positives = 93/142 (65%)
Frame = -2 / -3
Query: 657 SQRALDPALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEK 478
S A+DP PS P+ G +S+KYI QISL +LI A GC T GYC GG++GS RS K
Sbjct: 835 SHTAVDP*FPSSPTAAIRGSNSTKYIVQISLFMLILEAAGCSTCGYCKGGSKGSCRSSGK 656
Query: 477 KGCSSGLLYLPTCAWSFSVSLTIYSTKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLS 298
GCSSGLLYLPT SFSVSL + ST+DP KP S V AL QN ALS+R MMLS
Sbjct: 655 NGCSSGLLYLPTFE*SFSVSLNMNSTRDPTKPGNGNWEAS*VGALKQNWALSRRLKMMLS 476
Query: 297 SSLIKTCLMLSNVNMSLRSTLS 232
S L++ L++S V +SL S S
Sbjct: 475 SCLMRDSLIVSRVRVSLLSKRS 410
>gb|AI813035.1|AI813035 20A4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 526
Score = 246 bits (531), Expect = 2e-064
Identities = 100/142 (70%), Positives = 113/142 (79%)
Frame = +2 / +1
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 100 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFI 279
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW MY+D
Sbjct: 280 LRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYD 459
Query: 593 ELLPRLVKEGSDGNAGSSALCD 658
LLPR G DGN GS+A+CD
Sbjct: 460 SLLPRFATTGDDGNYGSTAVCD 525
Score = 155 bits (334), Expect = 3e-037
Identities = 78/139 (56%), Positives = 91/139 (65%)
Frame = -2 / -3
Query: 657 SQRALDPALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEK 478
SQ A+DP LPS P N G S YI QISL +LI+ A GC T GYC GG++GSG++ K
Sbjct: 524 SQTAVDP*LPSSPVVANRGSKLS*YILQISLFMLID*AAGCNTGGYCNGGSKGSGKASGK 345
Query: 477 KGCSSGLLYLPTCAWSFSVSLTIYSTKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLS 298
GCSSGLLYLPT AWS SVSL++ S +P P M KAL S V L*Q ALS+R MMLS
Sbjct: 344 NGCSSGLLYLPTLAWSISVSLSMNSISEPLNPGMVKALAS*VGPL*QYWALSRRLKMMLS 165
Query: 297 SSLIKTCLMLSNVNMSLRS 241
S I+ +LS V L S
Sbjct: 164 S*RIRE*RILSKVRFLLIS 108
Score = 113 bits (242), Expect = 1e-024
Identities = 55/124 (44%), Positives = 79/124 (63%)
Frame = -1 / -2
Query: 604 WKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELF 425
WK+ I IH PN F+ +DR+S G+Q+ WVL + G+ + KE + IWA VS + ME F
Sbjct: 471 WKQAIIIHTPNQFIYVDRLSCGVQHRWVL*WRE*GVW*SIRKEWMFIWAFVSAHFGMEYF 292
Query: 424 SFSNYIFNQRSSKTIHVESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTS 245
FS Y F +R++++ H ESI I+ +IVT L SLQK + DAV ++Q ++D +Q Q
Sbjct: 291 GFSEYEFYKRATESRHGESIGIVSGAIVTVLGSLQKVENDAVLLTDQRITDTVQGQVFAH 112
Query: 244 INPL 233
I PL
Sbjct: 111 I*PL 100
>gb|BG317820.1|BG317820 NXPV_006_B01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_006_B01 5' similar to Arabidopsis
thaliana sequence At1g69370 chorismate mutase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 600
Score = 232 bits (502), Expect = 2e-060
Identities = 95/136 (69%), Positives = 107/136 (78%)
Frame = +2 / +3
Query: 383 GFGGSLVEYIVRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSINI 562
GF GSL+E+I+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SINI
Sbjct: 3 GFSGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSINI 182
Query: 563 NKEIWKMYFDELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEA 742
NK IW MY+D LLPR G DGN GS+A+CDT CLQALS+RIHYGKFVAEAKF+ SPE
Sbjct: 183 NKLIWSMYYDSLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPEL 362
Query: 743 YTPAIIAQGGGQSQDL 790
Y AI AQ Q +L
Sbjct: 363 YEVAIRAQDKEQLMNL 410
Score = 170 bits (365), Expect = 2e-041
Identities = 77/128 (60%), Positives = 91/128 (71%)
Frame = -2 / -3
Query: 765 WAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSK 586
WA +A +SG+ NLASATNFP* ILLE ACK +VSQ A+DP LPS P N G S
Sbjct: 385 WARIATSYSSGEPLNLASATNFP*CILLERACKHMVSQTAVDP*LPSSPVVANRGSKLS* 206
Query: 585 YIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIY 406
YI QISL +LI+ A GC T GYC GG++GSG++ K GCSSGLLYLPT AWS SVSL++
Sbjct: 205 YILQISLFMLID*AAGCNTGGYCNGGSKGSGKASGKNGCSSGLLYLPTLAWSISVSLSMN 26
Query: 405 STKDPPKP 382
S +P P
Sbjct: 25 SISEPLNP 2
>gb|CO366784.1|CO366784 RTK1_30_C03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_C03_A029 3', mRNA sequence
Length = 853
Score = 217 bits (469), Expect(3) = 5e-060
Identities = 85/117 (72%), Positives = 99/117 (84%)
Frame = +2 / +2
Query: 416 RETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDE 595
+ETEKLH++VGRYKSPDEHPFF +DL EP LPP+QYP+VLHP A +ININKEIW MYF E
Sbjct: 8 KETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVE 187
Query: 596 LLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
LLPR+ G DGN GS+A+CD CLQA+SRRIHYGKFVAEAKF++S + Y PAI AQ
Sbjct: 188 LLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQ 358
Score = 152 bits (327), Expect = 3e-036
Identities = 71/118 (60%), Positives = 82/118 (69%)
Frame = -2 / -2
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A +AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P+ G +S+KY
Sbjct: 354 ARIAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKY 175
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTI 409
I QISL +LI A GC T GYC GG++GS RS K GCSSGLLYLPT SFSVSL +
Sbjct: 174 IVQISLFMLILEAAGCSTCGYCKGGSKGSCRSSGKNGCSSGLLYLPTFE*SFSVSLNM 1
Score = 29.9 bits (59), Expect(3) = 5e-060
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 482 PVYKIQPSLIAGLY 523
Score = 23.1 bits (44), Expect(3) = 5e-060
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 419 RVELKTMTYGQEVNL 463
>gb|DR100804.1|DR100804 STRR1_68_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 3', mRNA sequence
Length = 821
Score = 201 bits (434), Expect(3) = 3e-055
Identities = 79/109 (72%), Positives = 91/109 (83%)
Frame = +2 / +1
Query: 440 QVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDELLPRLVKE 619
+VGRYKSPDEHPFF +DL EP LPP+QYP+VLHP A +ININKEIW MYF ELLPR+
Sbjct: 1 KVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEIWTMYFVELLPRIAAV 180
Query: 620 GSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
G DGN GS+A+CD CLQA+SRRIHYGKFVAEAKF++S + Y PAI AQ
Sbjct: 181 GDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQ 327
Score = 143 bits (307), Expect = 2e-033
Identities = 65/107 (60%), Positives = 75/107 (70%)
Frame = -2 / -1
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A +AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P+ G +S+KY
Sbjct: 323 ARIAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKY 144
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPT 442
I QISL +LI A GC T GYC GG++GS RS K GCSSGLLYLPT
Sbjct: 143 IVQISLFMLILEAAGCSTCGYCKGGSKGSCRSSGKNGCSSGLLYLPT 3
Score = 29.9 bits (59), Expect(3) = 3e-055
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 451 PVYKIQPSLIAGLY 492
Score = 23.1 bits (44), Expect(3) = 3e-055
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +1
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 388 RVELKTMTYGQEVNL 432
>gb|BI077254.1|BI077254 NXPV_094_G08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_094_G08 5' similar to Arabidopsis
thaliana sequence At1g69370 chorismate mutase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 510
Score = 209 bits (451), Expect = 2e-053
Identities = 86/120 (71%), Positives = 97/120 (80%)
Frame = +2 / +1
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 127 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFI 306
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RETE LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW M +D
Sbjct: 307 LRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWXMXYD 486
Score = 131 bits (280), Expect = 8e-030
Identities = 65/114 (57%), Positives = 77/114 (67%)
Frame = -2 / -2
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYS 403
I QISL +LI+ A GC T GYC GG++GSG++ K GCSSGLLYLPT AWS SVSL++ S
Sbjct: 476 IXQISLFMLID*AAGCNTGGYCNGGSKGSGKASGKNGCSSGLLYLPTLAWSISVSLSMNS 297
Query: 402 TKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
+P P M KAL S V L*Q ALS+R MMLSS I+ +LS V L S
Sbjct: 296 ISEPLNPGMVKALAS*VGPL*QYWALSRRLKMMLSS*RIRE*RILSKVRFLLIS 135
Score = 104 bits (222), Expect = 8e-022
Identities = 51/117 (43%), Positives = 74/117 (63%)
Frame = -1 / -1
Query: 583 HFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELFSFSNYIF 404
H PN F+ +DR+S G+Q+ WVL + G+ + KE + IWA VS + ME F FS Y F
Sbjct: 477 HTPNQFIYVDRLSCGVQHRWVL*WRE*GVW*SIRKEWMFIWAFVSAHFGMEYFGFSEYEF 298
Query: 403 NQRSSKTIHVESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTSINPL 233
+R++++ H ESI I+ +IVT L SLQK + DAV ++Q ++D +Q Q I PL
Sbjct: 297 YKRATESRHGESIGIVSGAIVTVLGSLQKVENDAVLLTDQRITDTVQGQVFAHI*PL 127
>gb|BG317911.1|BG317911 NXPV_007_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_007_B08 5' similar to Arabidopsis
thaliana sequence At3g29200 chorismate mutase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 536
Score = 208 bits (448), Expect = 6e-053
Identities = 87/136 (63%), Positives = 97/136 (71%)
Frame = +2 / +1
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 127 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFI 306
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
+RET LHA+VGRYK DEHPFF L P PP+QYP P A ININK IW MY+D
Sbjct: 307 LRETXXLHAKVGRYKXXDEHPFFPDALXXPLXPPLQYPTXXAPAAQXININKLIWSMYYD 486
Query: 593 ELLPRLVKEGSDGNAG 640
LLPR G DGN G
Sbjct: 487 SLLPRXATTGDDGNYG 534
Score = 127 bits (271), Expect = 1e-028
Identities = 67/134 (50%), Positives = 78/134 (58%)
Frame = -2 / -1
Query: 642 DPALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSS 463
DP LPS P G S YI QISL +LI A G +GYC GG +G ++ K GCSS
Sbjct: 536 DP*LPSSPVVAXRGSKLS*YILQISLFMLIX*AAGAXXVGYCNGGXKGXXKASGKNGCSS 357
Query: 462 GLLYLPTCAWSFSVSLTIYSTKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIK 283
LYLPT AWS VSL++ S +P P M KAL S V L*Q ALS+R MMLSS I+
Sbjct: 356 XXLYLPTLAWSXXVSLSMNSISEPLNPGMVKALAS*VGPL*QYWALSRRLKMMLSS*RIR 177
Query: 282 TCLMLSNVNMSLRS 241
+LS V L S
Sbjct: 176 E*RILSKVRFLLIS 135
>gb|DR687187.1|DR687187 EST1077266 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABO44 3' end, mRNA sequence
Length = 731
Score = 200 bits (432), Expect = 9e-051
Identities = 81/112 (72%), Positives = 95/112 (84%)
Frame = +2 / +3
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
ER DRSD LTLD+IR+ LIR EDSIIF LLERAQFC+NA TYD++ F GF GSLVE++
Sbjct: 375 ERFDRSDTLTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYDASQFPFPGFVGSLVEFM 554
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININK 568
+ETEKLH++VGRYKSPDEHPFF +DL EP LPP+QYP+VLHP A +ININK
Sbjct: 555 FKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININK 710
Score = 125 bits (267), Expect = 5e-028
Identities = 62/112 (55%), Positives = 74/112 (66%)
Frame = -2 / -2
Query: 567 LLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPP 388
L +LI A GC T GYC GG++GS +S K GCSSGLLYLPT SFSVSL + ST+DP
Sbjct: 709 LFMLILEAAGCSTCGYCKGGSKGSCKSSGKNGCSSGLLYLPTFE*SFSVSLNMNSTRDPT 530
Query: 387 KPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRSTLS 232
KP S V AL QN ALS+R MMLSS L++ L++S V +SL S S
Sbjct: 529 KPGNGNWEAS*VGALKQNWALSRRLKMMLSSCLMRDSLIVSRVRVSLLSKRS 374
>gb|BQ697550.1|BQ697550 NXPV_054_G10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_054_G10 5' similar to Arabidopsis
thaliana sequence At1g69370 chorismate mutase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 476
Score = 192 bits (414), Expect = 3e-048
Identities = 80/112 (71%), Positives = 89/112 (79%)
Frame = +2 / +1
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 127 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFI 306
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININK 568
+RETE LHA+VGRYKSPDEHPFF LP P LPP+QYP VLHP A IN NK
Sbjct: 307 LRETEILHAKVGRYKSPDEHPFFPDALPXPLLPPLQYPPVLHPAAXXINXNK 462
Score = 117 bits (251), Expect = 8e-026
Identities = 59/109 (54%), Positives = 70/109 (64%)
Frame = -2 / -1
Query: 567 LLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPP 388
L +L A GC T GYC GG++G G++ K GCSSGLLYLPT AWS SVSL++ S +P
Sbjct: 461 LXMLXX*AAGCNTGGYCNGGSKGXGKASGKNGCSSGLLYLPTLAWSISVSLSMNSISEPL 282
Query: 387 KPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
P M KAL S V L*Q ALS+R MMLSS I+ +LS V L S
Sbjct: 281 NPGMVKALAS*VGPL*QYWALSRRLKMMLSS*RIRE*RILSKVRFLLIS 135
>gb|BQ696409.1|BQ696409 NXPV_040_G09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_040_G09 5' similar to Arabidopsis
thaliana sequence At1g69370 chorismate mutase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 497
Score = 187 bits (402), Expect = 1e-046
Identities = 81/122 (66%), Positives = 89/122 (72%)
Frame = +2 / +1
Query: 236 RVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIV 415
R+D S LTLDSIR LIR EDSIIF LL RAQ+CYN TYD+NAF M GF GSL E+I+
Sbjct: 130 RLDMSKNLTLDSIRYSLIRQEDSIIFNLLXRAQYCYNGPTYDANAFTMPGFSGSLXEFIL 309
Query: 416 RETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDE 595
RETE LHA+VGRYKSPDEHPFF +P LPP+ YP VLHP A SINI K IW
Sbjct: 310 RETEILHAKVGRYKSPDEHPFFPDXXSDPLLPPL*YPPVLHPAAQSINIYKLIWSKXXXX 489
Query: 596 LL 601
LL
Sbjct: 490 LL 495
Score = 123 bits (263), Expect = 2e-027
Identities = 64/121 (52%), Positives = 74/121 (61%)
Frame = -2 / -1
Query: 603 GRSSSKYIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFS 424
G S + QISL ILI+ A GC T GY GG++GS K GCSSGLLYLPT AWS S
Sbjct: 497 GSXXSXXLLQISLYILID*AAGCNTGGYYNGGSKGSDXXSGKNGCSSGLLYLPTLAWSIS 318
Query: 423 VSLTIYSTKDPPKPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLR 244
VSL++ S +P P M KAL S V L*Q AL +R MMLSS I+ +LS V L
Sbjct: 317 VSLSMNSXSEPLNPGMVKALAS*VGPL*QYWALXRRLKMMLSS*RIRE*RILSKVRFLLI 138
Query: 243 S 241
S
Sbjct: 137 S 135
>gb|BG319312.1|BG319312 NXPV_026_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_026_D07 5' similar to Arabidopsis
thaliana sequence At3g29200 chorismate mutase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 463
Score = 182 bits (393), Expect = 2e-045
Identities = 77/112 (68%), Positives = 85/112 (75%)
Frame = +2 / +1
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 127 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFI 306
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININK 568
+RETE LHA VGRY SPDEHPFF P LPP+QYP VLHP ININK
Sbjct: 307 LRETEILHAXVGRYXSPDEHPFFPDAXXXPLLPPLQYPPVLHPAXXXININK 462
Score = 113 bits (241), Expect = 2e-024
Identities = 57/109 (52%), Positives = 67/109 (61%)
Frame = -2 / -3
Query: 567 LLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPP 388
L +LI GC T GYC GG++G + K GCSSGL YLPT AWS SVSL++ S +P
Sbjct: 461 LFMLIXXXAGCNTGGYCNGGSKGXXXASGKNGCSSGLXYLPTXAWSISVSLSMNSISEPL 282
Query: 387 KPSMWKALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRS 241
P M KAL S V L*Q ALS+R MMLSS I+ +LS V L S
Sbjct: 281 NPGMVKALAS*VGPL*QYWALSRRLKMMLSS*RIRE*RILSKVRFLLIS 135
>gb|DR024075.1|DR024075 STRS1_62_C08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 3', mRNA sequence
Length = 763
Score = 149 bits (320), Expect(3) = 9e-040
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +2 / +2
Query: 515 MQYPRVLHPIADSININKEIWKMYFDELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIH 694
+QYP+VLHP A +ININKEIW MYF ELLPR+ G DGN GS+A+CD CLQA+SRRIH
Sbjct: 2 LQYPQVLHPAASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIH 181
Query: 695 YGKFVAEAKFQESPEAYTPAIIAQ 766
YGKFVAEAKF++S + Y PAI AQ
Sbjct: 182 YGKFVAEAKFRDSSKEYEPAIRAQ 253
Score = 102 bits (218), Expect = 3e-021
Identities = 47/82 (57%), Positives = 55/82 (67%)
Frame = -2 / -2
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A +AG + +S N ASATNFP*WILLE ACKQ S A+DP PS P+ G +S+KY
Sbjct: 249 ARIAGSYSFEESRNFASATNFP*WILLEMACKQATSHTAVDP*FPSSPTAAIRGSNSTKY 70
Query: 582 IFQISLLILIESAMGCKTLGYC 517
I QISL +LI A GC T GYC
Sbjct: 69 IVQISLFMLILEAAGCSTCGYC 4
Score = 29.9 bits (59), Expect(3) = 9e-040
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +2
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 377 PVYKIQPSLIAGLY 418
Score = 23.1 bits (44), Expect(3) = 9e-040
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +2
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 314 RVELKTMTYGQEVNL 358
>gb|DR168264.1|DR168264 RTPHOS1_24_F12.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_24_F12_A029 3', mRNA sequence
Length = 620
Score = 64.8 bits (135), Expect(5) = 1e-037
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2 / -2
Query: 626 DGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAI 757
DGN GS+A D LQA+S+R+HYGKFV+E+KF P A+ P I
Sbjct: 169 DGNYGSAATLDVEVLQAISKRVHYGKFVSESKFVSDPAAFIPHI 38
Score = 60.6 bits (126), Expect(5) = 1e-037
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +2 / -2
Query: 251 DILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAF 373
D L+LD IR VL RLED+IIFGL+ERAQF +N Y AF
Sbjct: 604 DPLSLDRIRSVLTRLEDTIIFGLIERAQFAHNPKIYHKGAF 482
Score = 44.6 bits (91), Expect(5) = 1e-037
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +2 / -2
Query: 392 GSLVEYIVRETEKLHAQVGRYKSPDEHPFFS 484
GS +E+ + ETE HA+ RY SPDE+PF S
Sbjct: 454 GSWLEWFLSETEAFHAKARRYTSPDEYPFTS 362
Score = 33.6 bits (67), Expect(5) = 1e-037
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2 / -2
Query: 479 FSKDLPEPRLPPMQYPRVLHPIADSIN 559
F+ +LPEP L P+ +P++L+P + + N
Sbjct: 370 FTSNLPEPVLKPVDFPQILYPNSINAN 290
Score = 26.3 bits (51), Expect(5) = 1e-037
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2 / -2
Query: 548 DSININKEIWKMYFDELLPRLVKEGS 625
+SIN N+ I Y +++PR+ K +
Sbjct: 307 NSINANRSIVSFYTRQIVPRITKRST 230
>gb|DR024213.1|DR024213 STRS1_63_D04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_D04_A034 3', mRNA sequence
Length = 778
Score = 124 bits (266), Expect(3) = 2e-032
Identities = 51/74 (68%), Positives = 59/74 (79%)
Frame = +2 / +3
Query: 545 ADSININKEIWKMYFDELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKF 724
A +ININKEIW MYF ELLPR+ G DGN GS+A+CD CLQA+SRRIHYGKFVAEAKF
Sbjct: 3 ASNININKEIWTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKF 182
Query: 725 QESPEAYTPAIIAQ 766
++S + Y AI AQ
Sbjct: 183 RDSSKEYELAIRAQ 224
Score = 29.9 bits (59), Expect(3) = 2e-032
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 348 PVYKIQPSLIAGLY 389
Score = 23.1 bits (44), Expect(3) = 2e-032
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / +3
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 285 RVELKTMTYGQEVNL 329
>gb|AW758562.1|AW758562 NXNV_085_E08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_085_E08 5' similar to Arabidopsis thaliana
sequence At3g29200 chorismate mutase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 238
Score = 132 bits (283), Expect = 3e-030
Identities = 51/77 (66%), Positives = 57/77 (74%)
Frame = +2 / +3
Query: 431 LHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDELLPRL 610
LHA+VGRYKSPDEHPFF LP+P LPP+QYP VLHP A SININK IW MY+D LLP
Sbjct: 6 LHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDSLLPXX 185
Query: 611 VKEGSDGNAGSSALCDT 661
G D G +A+CDT
Sbjct: 186 ATTGDDXXYGXTAVCDT 236
>gb|CO165868.1|CO165868 FLD1_57_E04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 5', mRNA sequence
Length = 877
Score = 106 bits (227), Expect(3) = 3e-027
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = +2 / -2
Query: 581 MYFDELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAII 760
MYF ELLPR+ G DGN GS+A+CD CLQA+SRRIHYGKFVAEAKF++S + Y PAI
Sbjct: 873 MYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIR 694
Query: 761 AQ 766
AQ
Sbjct: 693 AQ 688
Score = 29.9 bits (59), Expect(3) = 3e-027
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / -2
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 564 PVYKIQPSLIAGLY 523
Score = 23.1 bits (44), Expect(3) = 3e-027
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / -2
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 627 RVELKTMTYGQEVNL 583
>gb|DR025587.1|DR025587 STRS1_72_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_72_B09_A034 5', mRNA sequence
Length = 698
Score = 90.9 bits (192), Expect(3) = 2e-022
Identities = 36/54 (66%), Positives = 43/54 (79%)
Frame = +2 / -2
Query: 605 RLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
R+ G DGN GS+A+CD CLQA+SRRIHYGKFVAEAKF++S + Y PAI AQ
Sbjct: 697 RIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQ 536
Score = 29.9 bits (59), Expect(3) = 2e-022
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / -2
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 412 PVYKIQPSLIAGLY 371
Score = 23.1 bits (44), Expect(3) = 2e-022
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / -2
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 475 RVELKTMTYGQEVNL 431
>gb|BQ698408.1|BQ698408 NXPV_069_E09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_069_E09 5' similar to Arabidopsis
thaliana sequence At3g29200 chorismate mutase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 379
Score = 106 bits (226), Expect = 2e-022
Identities = 47/81 (58%), Positives = 56/81 (69%)
Frame = +2 / +1
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLE AQ+CYN TY +NAF GF G ++
Sbjct: 127 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLEXAQYCYNGPTYXANAFTKPGFNGXPKKFX 306
Query: 413 VRETEKLHAQVGRYKSPDEHP 475
+ TE L A+VG YKSP+E P
Sbjct: 307 LXXTEILQAKVGXYKSPNEQP 369
>gb|CO364393.1|CO364393 RTK1_15_A08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_A08_A029 5', mRNA sequence
Length = 866
Score = 89.0 bits (188), Expect(3) = 6e-022
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = +2 / -3
Query: 620 GSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
G DGN GS+A+CD CLQA+SRRIHYGKFVAEAKF++S + Y PAI AQ
Sbjct: 852 GDDGNYGSTAVCDVACLQAISRRIHYGKFVAEAKFRDSSKEYEPAIRAQ 706
Score = 29.9 bits (59), Expect(3) = 6e-022
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / -3
Query: 834 PVYKIRPSLVAELY 875
PVYKI+PSL+A LY
Sbjct: 582 PVYKIQPSLIAGLY 541
Score = 23.1 bits (44), Expect(3) = 6e-022
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3 / -3
Query: 765 KVEAKAKIFGQEVNI 809
+VE K +GQEVN+
Sbjct: 645 RVELKTMTYGQEVNL 601
>gb|BX253603.1|BX253603 BX253603 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085G10, mRNA sequence
Length = 504
Score = 101 bits (216), Expect = 6e-021
Identities = 43/62 (69%), Positives = 50/62 (80%)
Frame = +2 / +1
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
+R+D S LTLDSIR LIR EDSIIF LLERAQ+CYN TYD+NAF M GF GSL+E+I
Sbjct: 319 KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFI 498
Query: 413 VR 418
+R
Sbjct: 499 LR 504
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 513,858,189
Number of Sequences: 355925
Number of extensions: 8162604
Number of successful extensions: 63972
Number of sequences better than 1.0e-020: 48
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 13015497960
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)