TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478290.2.1
(1343 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR690801.1|DR690801 EST1080887 Normalized pine embryo li... 150 3e-053
gb|CF669563.1|CF669563 RTCNT1_44_B08.g1_A029 Root control P... 150 3e-053
gb|DR688043.1|DR688043 EST1078126 Normalized pine embryo li... 108 8e-049
gb|DT634334.1|DT634334 EST1149265 Normalized pine embryo li... 105 5e-047
gb|BQ196954.1|BQ196954 NXLV107_E07_F NXLV (Nsf Xylem Late w... 150 1e-044
gb|CF478531.1|CF478531 RTWW3_20_C08.g1_A022 Well-watered lo... 120 1e-038
gb|CO362135.1|CO362135 RTK1_1_B06.g1_A029 Roots minus potas... 120 1e-038
gb|CO363289.1|CO363289 RTK1_8_G01.g1_A029 Roots minus potas... 120 1e-038
gb|CO362128.1|CO362128 RTK1_1_A06.g1_A029 Roots minus potas... 120 1e-038
gb|DR695084.1|DR695084 EST1085177 Normalized pine embryo li... 107 2e-038
gb|DR690657.1|DR690657 EST1080743 Normalized pine embryo li... 119 2e-038
gb|CO363207.1|CO363207 RTK1_8_G01.b1_A029 Roots minus potas... 114 5e-037
gb|DT637802.1|DT637802 EST1152733 Normalized pine embryo li... 95 1e-036
gb|DT638907.1|DT638907 EST1153838 Normalized pine embryo li... 100 2e-036
gb|DR692891.1|DR692891 EST1082979 Normalized pine embryo li... 94 2e-036
gb|AI725192.1|AI725192 1091 PtIFG2 Pinus taeda cDNA clone 9... 91 2e-035
gb|DR080903.1|DR080903 RTFEPL1_26_B10.b1_A029 Roots plus ad... 139 3e-032
dbj|BD267356.1| Compositions isolated from plant cells and ... 83 5e-031
gb|CV036122.1|CV036122 RTNACL1_44_G04.g1_A029 Roots plus ad... 135 8e-031
gb|DR049176.1|DR049176 RTBOR1_14_C08.b1_A029 Roots plus add... 135 8e-031
gb|DR093167.1|DR093167 STRR1_6_B05.g1_A033 Stem Response Re... 135 8e-031
gb|DR051298.1|DR051298 RTBOR1_29_C04.b1_A029 Roots plus add... 131 1e-029
gb|CV036049.1|CV036049 RTNACL1_44_G04.b1_A029 Roots plus ad... 129 3e-029
gb|DR056439.1|DR056439 RTCA1_30_G02.b1_A029 Roots minus cal... 68 4e-023
>gb|DR690801.1|DR690801 EST1080887 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACZ47 3' end, mRNA sequence
Length = 830
Score = 150 bits (322), Expect(2) = 3e-053
Identities = 58/93 (62%), Positives = 79/93 (84%)
Frame = +1 / +1
Query: 433 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEFF 612
++ VN+IITDYCMPGMTGYDLL+++KESS+++DIPVVIMSSEN+ SRI+RC+ EGA+EF
Sbjct: 547 NIQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEGAEEFL 726
Query: 613 LKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHS 711
LKPV+LSD+ KL+ HIL +++Q S S++
Sbjct: 727 LKPVQLSDVKKLRSHILNKGRSRDQQSTSSSNN 825
Score = 105 bits (225), Expect(2) = 2e-031
Identities = 47/70 (67%), Positives = 55/70 (78%)
Frame = -1 / -1
Query: 659 MWGLSLFMSDSRTGFRKNSSAPSSRHLLILEGMFSEDMITTGISLRDDDSLIFLSRSYPV 480
MW LS F SD+ TGF KNSSAPS HLLI + FSED+ITTG+SL DDSL LS+S PV
Sbjct: 773 MWDLSFFTSDNCTGFNKNSSAPSDIHLLIRDSTFSEDIITTGMSLTADDSLTLLSKS*PV 594
Query: 479 MPGMQ*SVMI 450
+PG+Q*SV+I
Sbjct: 593 IPGIQ*SVII 564
Score = 79.9 bits (168), Expect(2) = 3e-053
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +1 / +1
Query: 208 RSVMAAVATETPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQD 381
R+ A+ + HVLAVDDS+ DRKLIE+LLK SS++VTTVDS KALQFLGL D +
Sbjct: 355 RNESGDAASTSELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDDE 528
Score = 51.0 bits (105), Expect(2) = 2e-031
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = -1 / -1
Query: 380 SWSWRPRNCSALLPESTVVTWKEEVLRSLSMSFLSGRLSSTART 249
S S PRNC A L STVVT EE+ S S++F S LSSTA+T
Sbjct: 527 SSSSSPRNCKAFLTLSTVVTRYEEIFNSFSINFRSRTLSSTAKT 396
>gb|CF669563.1|CF669563 RTCNT1_44_B08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_B08_A029 5', mRNA sequence
Length = 774
Score = 150 bits (322), Expect(2) = 3e-053
Identities = 58/93 (62%), Positives = 79/93 (84%)
Frame = +1 / +2
Query: 433 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEFF 612
++ VN+IITDYCMPGMTGYDLL+++KESS+++DIPVVIMSSEN+ SRI+RC+ EGA+EF
Sbjct: 473 NIQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEGAEEFL 652
Query: 613 LKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHS 711
LKPV+LSD+ KL+ HIL +++Q S S++
Sbjct: 653 LKPVQLSDVKKLRSHILNKGRSRDQQSTSSSNN 751
Score = 105 bits (225), Expect(2) = 2e-031
Identities = 47/70 (67%), Positives = 55/70 (78%)
Frame = -1 / -1
Query: 659 MWGLSLFMSDSRTGFRKNSSAPSSRHLLILEGMFSEDMITTGISLRDDDSLIFLSRSYPV 480
MW LS F SD+ TGF KNSSAPS HLLI + FSED+ITTG+SL DDSL LS+S PV
Sbjct: 699 MWDLSFFTSDNCTGFNKNSSAPSDIHLLIRDSTFSEDIITTGMSLTADDSLTLLSKS*PV 520
Query: 479 MPGMQ*SVMI 450
+PG+Q*SV+I
Sbjct: 519 IPGIQ*SVII 490
Score = 79.9 bits (168), Expect(2) = 3e-053
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +1 / +2
Query: 208 RSVMAAVATETPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQD 381
R+ A+ + HVLAVDDS+ DRKLIE+LLK SS++VTTVDS KALQFLGL D +
Sbjct: 281 RNESGDAASTSELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDDE 454
Score = 51.0 bits (105), Expect(2) = 2e-031
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = -1 / -1
Query: 380 SWSWRPRNCSALLPESTVVTWKEEVLRSLSMSFLSGRLSSTART 249
S S PRNC A L STVVT EE+ S S++F S LSSTA+T
Sbjct: 453 SSSSSPRNCKAFLTLSTVVTRYEEIFNSFSINFRSRTLSSTAKT 322
>gb|DR688043.1|DR688043 EST1078126 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABZ67 3' end, mRNA sequence
Length = 829
Score = 108 bits (231), Expect(3) = 8e-049
Identities = 40/60 (66%), Positives = 53/60 (88%)
Frame = +1 / +1
Query: 433 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEFF 612
++ VN+IITDYCMPGMTGYDLL+++KESS+++DIPVVIMSSEN+ SRI+RC+ E F+
Sbjct: 547 NIQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEALKSFY 726
Score = 79.9 bits (168), Expect(3) = 8e-049
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +1 / +1
Query: 208 RSVMAAVATETPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQD 381
R+ A+ + HVLAVDDS+ DRKLIE+LLK SS++VTTVDS KALQFLGL D +
Sbjct: 355 RNESGDAASTSELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDDE 528
Score = 68.0 bits (142), Expect(3) = 4e-026
Identities = 31/48 (64%), Positives = 38/48 (79%)
Frame = -1 / -3
Query: 593 SSRHLLILEGMFSEDMITTGISLRDDDSLIFLSRSYPVMPGMQ*SVMI 450
S HLLI + FSED+ITTG+SL DDSL LS+S PV+PG+Q*SV+I
Sbjct: 707 SDIHLLIRDSTFSEDIITTGMSLTADDSLTLLSKS*PVIPGIQ*SVII 564
Score = 51.0 bits (105), Expect(3) = 4e-026
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = -1 / -3
Query: 380 SWSWRPRNCSALLPESTVVTWKEEVLRSLSMSFLSGRLSSTART 249
S S PRNC A L STVVT EE+ S S++F S LSSTA+T
Sbjct: 527 SSSSSPRNCKAFLTLSTVVTRYEEIFNSFSINFRSRTLSSTAKT 396
Score = 45.1 bits (92), Expect(3) = 8e-049
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +1 / +3
Query: 598 ADEFFLKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHS 711
A+EF LKPV+LSD+ KL+ HIL +++Q S S++
Sbjct: 711 AEEFLLKPVQLSDVKKLRSHILNKGRSRDQQSTSSSNN 824
Score = 37.7 bits (76), Expect(3) = 4e-026
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -1
Query: 659 MWGLSLFMSDSRTGFRKNSSA 597
MW LS F SD+ TGF KNSSA
Sbjct: 772 MWDLSFFTSDNCTGFNKNSSA 710
>gb|DT634334.1|DT634334 EST1149265 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG483 3' end, mRNA sequence
Length = 834
Score = 105 bits (225), Expect(3) = 5e-047
Identities = 39/60 (65%), Positives = 52/60 (86%)
Frame = +1 / +3
Query: 433 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEFF 612
++ VN+IITDYCMPGMTGYDLL+++KESS+++DIPVVIMSSEN+ SRI+ C+ E F+
Sbjct: 555 NIQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISMCMSEALKSFY 734
Score = 79.9 bits (168), Expect(3) = 5e-047
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +1 / +3
Query: 208 RSVMAAVATETPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQD 381
R+ A+ + HVLAVDDS+ DRKLIE+LLK SS++VTTVDS KALQFLGL D +
Sbjct: 363 RNESGDAASTSELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDDE 536
Score = 67.0 bits (140), Expect(3) = 9e-027
Identities = 30/48 (62%), Positives = 38/48 (79%)
Frame = -1 / -3
Query: 593 SSRHLLILEGMFSEDMITTGISLRDDDSLIFLSRSYPVMPGMQ*SVMI 450
S H+LI + FSED+ITTG+SL DDSL LS+S PV+PG+Q*SV+I
Sbjct: 715 SDIHMLIRDSTFSEDIITTGMSLTADDSLTLLSKS*PVIPGIQ*SVII 572
Score = 51.0 bits (105), Expect(3) = 9e-027
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = -1 / -3
Query: 380 SWSWRPRNCSALLPESTVVTWKEEVLRSLSMSFLSGRLSSTART 249
S S PRNC A L STVVT EE+ S S++F S LSSTA+T
Sbjct: 535 SSSSSPRNCKAFLTLSTVVTRYEEIFNSFSINFRSRTLSSTAKT 404
Score = 41.8 bits (85), Expect(3) = 5e-047
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1 / +2
Query: 595 GADEFFLKPVRLSDMNKLKPHIL 663
GA+EF LKPV+LSD+ KL+ HIL
Sbjct: 716 GAEEFLLKPVQLSDVKKLRSHIL 784
Score = 40.9 bits (83), Expect(3) = 9e-027
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -1 / -1
Query: 659 MWGLSLFMSDSRTGFRKNSSAP 594
MW LS F SD+ TGF KNSSAP
Sbjct: 780 MWDLSFFTSDNCTGFNKNSSAP 715
>gb|BQ196954.1|BQ196954 NXLV107_E07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV107_E07 5' similar to Arabidopsis thaliana
sequence At1g10470 putative response regulator 3 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 787
Score = 150 bits (322), Expect(2) = 1e-044
Identities = 58/93 (62%), Positives = 79/93 (84%)
Frame = +1 / +3
Query: 433 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEFF 612
++ VN+IITDYCMPGMTGYDLL+++KESS+++DIPVVIMSSEN+ SRI+RC+ EGA+EF
Sbjct: 129 NIQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEGAEEFL 308
Query: 613 LKPVRLSDMNKLKPHILKSRCNQEQHQQSDSHS 711
LKPV+LSD+ KL+ HIL +++Q S S++
Sbjct: 309 LKPVQLSDVKKLRSHILNKGRSRDQQSTSSSNN 407
Score = 105 bits (225), Expect(2) = 9e-027
Identities = 47/70 (67%), Positives = 55/70 (78%)
Frame = -1 / -1
Query: 659 MWGLSLFMSDSRTGFRKNSSAPSSRHLLILEGMFSEDMITTGISLRDDDSLIFLSRSYPV 480
MW LS F SD+ TGF KNSSAPS HLLI + FSED+ITTG+SL DDSL LS+S PV
Sbjct: 355 MWDLSFFTSDNCTGFNKNSSAPSDIHLLIRDSTFSEDIITTGMSLTADDSLTLLSKS*PV 176
Query: 479 MPGMQ*SVMI 450
+PG+Q*SV+I
Sbjct: 175 IPGIQ*SVII 146
Score = 51.0 bits (105), Expect(2) = 1e-044
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +1 / +3
Query: 289 IERLLKTSSFQVTTVDSGSKALQFLGLHDQD 381
IE+LLK SS++VTTVDS KALQFLGL D +
Sbjct: 18 IEKLLKISSYRVTTVDSVRKALQFLGLEDDE 110
Score = 35.4 bits (71), Expect(2) = 9e-027
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = -1 / -1
Query: 380 SWSWRPRNCSALLPESTVVTWKEEVLRSLSM 288
S S PRNC A L STVVT EE+ S S+
Sbjct: 109 SSSSSPRNCKAFLTLSTVVTRYEEIFNSFSI 17
>gb|CF478531.1|CF478531 RTWW3_20_C08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_20_C08_A022 5', mRNA sequence
Length = 820
Score = 120 bits (256), Expect(2) = 1e-038
Identities = 46/89 (51%), Positives = 64/89 (71%)
Frame = +1 / +1
Query: 406 HQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRC 585
H + +LIITDYCMP +TGYDLLK++KE L++IPV+IMSSEN+P RI RC
Sbjct: 439 HATATVCTNPLKFSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRC 618
Query: 586 LEEGADEFFLKPVRLSDMNKLKPHILKSR 672
L+EGA++F +KPV+ D+ K+ +I S+
Sbjct: 619 LDEGAEDFIVKPVQRDDIKKITGYIKVSK 705
Score = 61.1 bits (127), Expect(2) = 1e-038
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1 / +1
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDST 387
HVLAVDD DR ++ERLL++ S +VT VDS +KAL+ LG++ + +T
Sbjct: 307 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHAT 447
>gb|CO362135.1|CO362135 RTK1_1_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_B06_A029 5', mRNA sequence
Length = 804
Score = 120 bits (256), Expect(2) = 1e-038
Identities = 46/89 (51%), Positives = 64/89 (71%)
Frame = +1 / +1
Query: 406 HQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRC 585
H + +LIITDYCMP +TGYDLLK++KE L++IPV+IMSSEN+P RI RC
Sbjct: 373 HATATVCTNPLKFSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRC 552
Query: 586 LEEGADEFFLKPVRLSDMNKLKPHILKSR 672
L+EGA++F +KPV+ D+ K+ +I S+
Sbjct: 553 LDEGAEDFIVKPVQRDDIKKITGYIKVSK 639
Score = 61.1 bits (127), Expect(2) = 1e-038
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1 / +1
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDST 387
HVLAVDD DR ++ERLL++ S +VT VDS +KAL+ LG++ + +T
Sbjct: 241 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHAT 381
>gb|CO363289.1|CO363289 RTK1_8_G01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_G01_A029 5', mRNA sequence
Length = 805
Score = 120 bits (256), Expect(2) = 1e-038
Identities = 46/89 (51%), Positives = 64/89 (71%)
Frame = +1 / -1
Query: 406 HQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRC 585
H + +LIITDYCMP +TGYDLLK++KE L++IPV+IMSSEN+P RI RC
Sbjct: 643 HATATVCTNPLKFSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRC 464
Query: 586 LEEGADEFFLKPVRLSDMNKLKPHILKSR 672
L+EGA++F +KPV+ D+ K+ +I S+
Sbjct: 463 LDEGAEDFIVKPVQRDDIKKITGYIKVSK 377
Score = 61.1 bits (127), Expect(2) = 1e-038
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1 / -1
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDST 387
HVLAVDD DR ++ERLL++ S +VT VDS +KAL+ LG++ + +T
Sbjct: 775 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHAT 635
>gb|CO362128.1|CO362128 RTK1_1_A06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_A06_A029 5', mRNA sequence
Length = 763
Score = 120 bits (256), Expect(2) = 1e-038
Identities = 46/89 (51%), Positives = 64/89 (71%)
Frame = +1 / +2
Query: 406 HQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRC 585
H + +LIITDYCMP +TGYDLLK++KE L++IPV+IMSSEN+P RI RC
Sbjct: 368 HATATVCTNPLKFSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRC 547
Query: 586 LEEGADEFFLKPVRLSDMNKLKPHILKSR 672
L+EGA++F +KPV+ D+ K+ +I S+
Sbjct: 548 LDEGAEDFIVKPVQRDDIKKITGYIKVSK 634
Score = 61.1 bits (127), Expect(2) = 1e-038
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1 / +2
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDST 387
HVLAVDD DR ++ERLL++ S +VT VDS +KAL+ LG++ + +T
Sbjct: 236 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHAT 376
>gb|DR695084.1|DR695084 EST1085177 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEK27 3' end, mRNA sequence
Length = 826
Score = 107 bits (229), Expect(2) = 2e-038
Identities = 41/62 (66%), Positives = 55/62 (88%)
Frame = +1 / +1
Query: 436 VAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEFFL 615
V VN+I+TDY MPGM+GYDLLK++KESS L++IPVV+MSSEN+ SR +RCL+ GA++F +
Sbjct: 640 VDVNMIMTDYSMPGMSGYDLLKRVKESSKLKEIPVVVMSSENVSSRKSRCLDGGAEDFIV 819
Query: 616 KP 621
KP
Sbjct: 820 KP 825
Score = 73.0 bits (153), Expect(2) = 2e-038
Identities = 30/48 (62%), Positives = 38/48 (79%)
Frame = +1 / +1
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTV 390
HVLAVDDS+ DRK+IE++LK S ++VTTVDSG AL+FLG D + V
Sbjct: 499 HVLAVDDSITDRKVIEKILKNSCYKVTTVDSGKSALEFLGSGDDHNAV 642
>gb|DR690657.1|DR690657 EST1080743 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACX70 3' end, mRNA sequence
Length = 746
Score = 119 bits (255), Expect(2) = 2e-038
Identities = 46/89 (51%), Positives = 64/89 (71%)
Frame = +1 / +1
Query: 406 HQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRC 585
H + +LIITDYCMP +TGYDLLK++KE L++IPV+IMSSEN+P RI RC
Sbjct: 478 HATATVCTNPLKSSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRC 657
Query: 586 LEEGADEFFLKPVRLSDMNKLKPHILKSR 672
L+EGA++F +KPV+ D+ K+ +I S+
Sbjct: 658 LDEGAEDFIVKPVQRDDIKKITGYIKVSK 744
Score = 61.1 bits (127), Expect(2) = 2e-038
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1 / +1
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDST 387
HVLAVDD DR ++ERLL++ S +VT VDS +KAL+ LG++ + +T
Sbjct: 346 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHAT 486
>gb|CO363207.1|CO363207 RTK1_8_G01.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_G01_A029 3', mRNA sequence
Length = 730
Score = 114 bits (244), Expect(2) = 5e-037
Identities = 43/78 (55%), Positives = 58/78 (74%)
Frame = +1 / -2
Query: 406 HQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRC 585
H + +LIITDYCMP +TGYDLLK++KE L++IPV+IMSSEN+P RI RC
Sbjct: 237 HATATVCTNPLKFSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMSSENVPQRIQRC 58
Query: 586 LEEGADEFFLKPVRLSDM 639
L+EGA++F +KPV+ D+
Sbjct: 57 LDEGAEDFIVKPVQRDDI 4
Score = 61.1 bits (127), Expect(2) = 5e-037
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1 / -2
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDST 387
HVLAVDD DR ++ERLL++ S +VT VDS +KAL+ LG++ + +T
Sbjct: 369 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHAT 229
>gb|DT637802.1|DT637802 EST1152733 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH768 3' end, mRNA sequence
Length = 711
Score = 94.5 bits (200), Expect(2) = 1e-036
Identities = 36/49 (73%), Positives = 46/49 (93%)
Frame = +1 / +3
Query: 433 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRIN 579
++ VN+IITDYCMPGMTGYDLL+++KESS++ DIPVVIMSSEN+ SRI+
Sbjct: 555 NIQVNMIITDYCMPGMTGYDLLRRVKESSAVTDIPVVIMSSENVESRIS 701
Score = 79.9 bits (168), Expect(2) = 1e-036
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +1 / +3
Query: 208 RSVMAAVATETPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQD 381
R+ A+ + HVLAVDDS+ DRKLIE+LLK SS++VTTVDS KALQFLGL D +
Sbjct: 363 RNESGDAASTSELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDDE 536
>gb|DT638907.1|DT638907 EST1153838 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHK82 3' end, mRNA sequence
Length = 826
Score = 100 bits (214), Expect(2) = 2e-036
Identities = 39/58 (67%), Positives = 51/58 (87%)
Frame = +1 / +3
Query: 436 VAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEF 609
V VN+I+TDY MPGM+GYDLLK++KESS L +IPVV+MSSEN+ SR +RCL+ GA++F
Sbjct: 648 VDVNMIMTDYSMPGMSGYDLLKRVKESSKLNEIPVVVMSSENVSSRKSRCLDGGAEDF 821
Score = 73.0 bits (153), Expect(2) = 2e-036
Identities = 30/48 (62%), Positives = 38/48 (79%)
Frame = +1 / +3
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTV 390
HVLAVDDS+ DRK+IE++LK S ++VTTVDSG AL+FLG D + V
Sbjct: 507 HVLAVDDSITDRKVIEKILKNSCYKVTTVDSGKSALEFLGSGDDHNAV 650
>gb|DR692891.1|DR692891 EST1082979 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADR59 3' end, mRNA sequence
Length = 691
Score = 94.1 bits (199), Expect(2) = 2e-036
Identities = 36/48 (75%), Positives = 45/48 (93%)
Frame = +1 / +1
Query: 433 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRI 576
++ VN+IITDYCMPGMTGYDLL+++KESS++ DIPVVIMSSEN+ SRI
Sbjct: 547 NIQVNMIITDYCMPGMTGYDLLRRVKESSAVTDIPVVIMSSENVESRI 690
Score = 79.9 bits (168), Expect(2) = 2e-036
Identities = 36/58 (62%), Positives = 44/58 (75%)
Frame = +1 / +1
Query: 208 RSVMAAVATETPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQD 381
R+ A+ + HVLAVDDS+ DRKLIE+LLK SS++VTTVDS KALQFLGL D +
Sbjct: 355 RNESGDAASTSELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDDE 528
>gb|AI725192.1|AI725192 1091 PtIFG2 Pinus taeda cDNA clone 9119r, mRNA sequence
Length = 684
Score = 91.3 bits (193), Expect(2) = 2e-035
Identities = 34/46 (73%), Positives = 44/46 (95%)
Frame = +1 / +2
Query: 433 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPS 570
++ VN+IITDYCMPGMTGYDLL+++KESS+++DIPVVIMSSEN+ S
Sbjct: 188 NIQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVES 325
Score = 79.4 bits (167), Expect(2) = 2e-035
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +1 / +2
Query: 229 ATETPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQD 381
A+ + HVLAVDDS+ DRKLIE+LLK SS++VTTVDS KALQFLGL D +
Sbjct: 17 ASTSELHVLAVDDSVLDRKLIEKLLKISSYRVTTVDSVRKALQFLGLEDDE 169
>gb|DR080903.1|DR080903 RTFEPL1_26_B10.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_B10_A029 3', mRNA sequence
Length = 586
Score = 139 bits (299), Expect = 3e-032
Identities = 54/85 (63%), Positives = 72/85 (84%)
Frame = +1 / +3
Query: 457 TDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEFFLKPVRLSD 636
TDYCMPGMTGYDLL+++KESS+++DIPVVIMSSEN+ SRI+RC+ EGA+EF LKPV+LSD
Sbjct: 3 TDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEGAEEFLLKPVQLSD 182
Query: 637 MNKLKPHILKSRCNQEQHQQSDSHS 711
+ KL+ HIL +++Q S S++
Sbjct: 183 VKKLRSHILNKGRSRDQQSTSSSNN 257
Score = 103 bits (220), Expect = 3e-021
Identities = 46/68 (67%), Positives = 53/68 (77%)
Frame = -1 / -1
Query: 659 MWGLSLFMSDSRTGFRKNSSAPSSRHLLILEGMFSEDMITTGISLRDDDSLIFLSRSYPV 480
MW LS F SD+ TGF KNSSAPS HLLI + FSED+ITTG+SL DDSL LS+S PV
Sbjct: 205 MWDLSFFTSDNCTGFNKNSSAPSDIHLLIRDSTFSEDIITTGMSLTADDSLTLLSKS*PV 26
Query: 479 MPGMQ*SV 456
+PG+Q*SV
Sbjct: 25 IPGIQ*SV 2
>dbj|BD267356.1| Compositions isolated from plant cells and utilization of the same
in modifying plant cell signal transduction
Length = 1800
Score = 83.1 bits (175), Expect(2) = 5e-031
Identities = 32/46 (69%), Positives = 40/46 (86%)
Frame = +1 / +2
Query: 445 NLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINR 582
++IITDYCMP MTGYDLLKK+KE+ L++IPVVI+SSEN+P I R
Sbjct: 317 SMIITDYCMPEMTGYDLLKKLKETKGLKEIPVVIISSENVPQIIQR 454
Score = 72.5 bits (152), Expect(2) = 5e-031
Identities = 30/50 (60%), Positives = 40/50 (80%)
Frame = +1 / +2
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTVPP 396
HVLAVDD + DRK+IERLL+T + +VTTVDS ++AL+ LGL + +T PP
Sbjct: 146 HVLAVDDCVIDRKIIERLLETDTVKVTTVDSPTRALEMLGLTQEPTTTPP 295
>gb|CV036122.1|CV036122 RTNACL1_44_G04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_44_G04_A029 5', mRNA sequence
Length = 685
Score = 135 bits (289), Expect = 8e-031
Identities = 53/87 (60%), Positives = 66/87 (75%)
Frame = +1 / +1
Query: 400 HTHQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRIN 579
H Q A VN+IITDYCMPGMTGYDLLKK+KE+ L++IPVVI+SSEN+P RI
Sbjct: 13 HEEQSTCATTNAFKVNMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRIT 192
Query: 580 RCLEEGADEFFLKPVRLSDMNKLKPHI 660
CL EGA +F +KP++L+D+ KLK HI
Sbjct: 193 SCLAEGAKDFIIKPLKLADITKLKGHI 273
>gb|DR049176.1|DR049176 RTBOR1_14_C08.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_14_C08_A029 3', mRNA sequence
Length = 665
Score = 135 bits (289), Expect = 8e-031
Identities = 53/87 (60%), Positives = 66/87 (75%)
Frame = +1 / +1
Query: 400 HTHQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRIN 579
H Q A VN+IITDYCMPGMTGYDLLKK+KE+ L++IPVVI+SSEN+P RI
Sbjct: 13 HEEQSTCATTNAFKVNMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRIT 192
Query: 580 RCLEEGADEFFLKPVRLSDMNKLKPHI 660
CL EGA +F +KP++L+D+ KLK HI
Sbjct: 193 SCLAEGAKDFIIKPLKLADITKLKGHI 273
>gb|DR093167.1|DR093167 STRR1_6_B05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_6_B05_A033 5', mRNA sequence
Length = 885
Score = 135 bits (289), Expect = 8e-031
Identities = 53/87 (60%), Positives = 66/87 (75%)
Frame = +1 / +2
Query: 400 HTHQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRIN 579
H Q A VN+IITDYCMPGMTGYDLLKK+KE+ L++IPVVI+SSEN+P RI
Sbjct: 344 HEEQSTCATTNAFKVNMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRIT 523
Query: 580 RCLEEGADEFFLKPVRLSDMNKLKPHI 660
CL EGA +F +KP++L+D+ KLK HI
Sbjct: 524 SCLAEGAKDFIIKPLKLADITKLKGHI 604
Score = 84.0 bits (177), Expect(2) = 2e-021
Identities = 43/70 (61%), Positives = 49/70 (70%)
Frame = -1 / -1
Query: 659 MWGLSLFMSDSRTGFRKNSSAPSSRHLLILEGMFSEDMITTGISLRDDDSLIFLSRSYPV 480
M + MS S +GF S APS+R L+IL G FSEDMITTGIS R SL F SRS PV
Sbjct: 603 MCPFNFVMSASFSGFMIKSFAPSARQLVILCGTFSEDMITTGISFRHLVSLTFFSRS*PV 424
Query: 479 MPGMQ*SVMI 450
+PG+Q*SVMI
Sbjct: 423 IPGIQ*SVMI 394
Score = 72.1 bits (151), Expect(2) = 4e-021
Identities = 29/58 (50%), Positives = 44/58 (75%)
Frame = +1 / +2
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDSTVPPVHTHQLDV 420
HVLAVDD L +RK+IE+LLKT+ F+VT+VDS +AL+ LG H++ ST + ++++
Sbjct: 221 HVLAVDDCLIERKVIEKLLKTNFFKVTSVDSAERALEVLGFHEEQSTCATTNAFKVNM 394
Score = 50.1 bits (103), Expect(2) = 4e-021
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +3 / +1
Query: 450 DHHRLLHAWHDRI*PAQEDQGVVVSQRYPGGDHVL*EHSFKDQ*VPGGRS*RVLPKTCAA 629
DH+RLL+A +D +* A+E QG +S+ DH+ + + ++ + G RS R KT A
Sbjct: 394 DHYRLLYARNDGL*SAEESQGNQMSEGDSCCDHIFRKCAAENNKLSGRRSKRFYHKTAKA 573
Query: 630 IRHEQAQAPH 659
RH + + H
Sbjct: 574 CRHHEVKRTH 603
Score = 39.6 bits (80), Expect(2) = 2e-021
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = -1 / -1
Query: 365 PRNCSALLPESTVVTWKEEVLRSLSMSFLSGRLSSTART 249
P+ SAL ST VT K+ V +S SM+F S R SSTA T
Sbjct: 339 PKTSSALSALSTEVTLKKLVFKSFSMTFRSIRQSSTANT 223
>gb|DR051298.1|DR051298 RTBOR1_29_C04.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_29_C04_A029 3', mRNA sequence
Length = 616
Score = 131 bits (281), Expect = 1e-029
Identities = 50/73 (68%), Positives = 63/73 (86%)
Frame = +1 / +1
Query: 442 VNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRINRCLEEGADEFFLKP 621
VN+IITDYCMPGMTGYDLLKK+KE+ L++IPVVI+SSEN+P RI CL EGA +F +KP
Sbjct: 1 VNMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRITSCLAEGAKDFIIKP 180
Query: 622 VRLSDMNKLKPHI 660
++L+D+ KLK HI
Sbjct: 181 LKLADITKLKGHI 219
>gb|CV036049.1|CV036049 RTNACL1_44_G04.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_44_G04_A029 3', mRNA sequence
Length = 683
Score = 129 bits (277), Expect = 3e-029
Identities = 51/87 (58%), Positives = 65/87 (74%)
Frame = +1 / +3
Query: 400 HTHQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMSSENIPSRIN 579
H Q A V++IITDYCMPGMTGYDLLKK+KE+ L++IPVVI+SSEN+P RI
Sbjct: 30 HEEQSTCATTNAFKVHMIITDYCMPGMTGYDLLKKVKETKCLKEIPVVIISSENVPQRIT 209
Query: 580 RCLEEGADEFFLKPVRLSDMNKLKPHI 660
CL EGA +F +KP++ +D+ KLK HI
Sbjct: 210 SCLAEGAKDFIIKPLKPADITKLKGHI 290
>gb|DR056439.1|DR056439 RTCA1_30_G02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_30_G02_A029 3', mRNA sequence
Length = 656
Score = 68.0 bits (142), Expect(2) = 4e-023
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +1 / -1
Query: 406 HQLDVAANQDVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIMS 552
H + +LIITDYCMP +TGYDLLK++KE L++IPV+IMS
Sbjct: 149 HATATVCTNPLKFSLIITDYCMPELTGYDLLKRLKEIKGLKEIPVIIMS 3
Score = 61.1 bits (127), Expect(2) = 4e-023
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1 / -1
Query: 247 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLHDQDST 387
HVLAVDD DR ++ERLL++ S +VT VDS +KAL+ LG++ + +T
Sbjct: 281 HVLAVDDCRVDRMVVERLLRSDSVKVTAVDSAAKALELLGVNKEHAT 141
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 725,864,642
Number of Sequences: 355925
Number of extensions: 10889923
Number of successful extensions: 71953
Number of sequences better than 1.0e-020: 29
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 20909877435
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)