TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478113.2.1
(796 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN632101.1|DN632101 EST982917 Subtracted pine embryo lib... 184 5e-046
gb|DT630456.1|DT630456 EST1154868 Subtracted pine embryo li... 184 5e-046
gb|CX645893.1|CX645893 COLD1_5_H12.g1_A029 Root cold Pinus ... 152 2e-036
gb|BX253213.1|BX253213 BX253213 Pinus pinaster differenciat... 150 1e-035
gb|CF672623.1|CF672623 RTCNT1_64_H05.g1_A029 Root control P... 150 1e-035
gb|CO160128.1|CO160128 FLD1_19_A03.b1_A029 Root flooded Pin... 150 1e-035
gb|CO160201.1|CO160201 FLD1_19_A03.g1_A029 Root flooded Pin... 150 1e-035
gb|CV035712.1|CV035712 RTNACL1_42_A06.b1_A029 Roots plus ad... 150 1e-035
gb|CV035788.1|CV035788 RTNACL1_42_A06.g1_A029 Roots plus ad... 150 1e-035
gb|DN609369.1|DN609369 EST962419 Subtracted pine embryo lib... 150 1e-035
gb|DR012508.1|DR012508 HEAT1_13_G02.b1_A029 Root at 37 C fo... 150 1e-035
gb|DR014767.1|DR014767 HEAT1_51_B06.g1_A029 Root at 37 C fo... 150 1e-035
gb|DR017755.1|DR017755 STRS1_18_G04.b1_A034 Shoot tip pitch... 150 1e-035
gb|DR017840.1|DR017840 STRS1_18_G04.g1_A034 Shoot tip pitch... 150 1e-035
gb|DR055871.1|DR055871 RTCA1_26_B02.g1_A029 Roots minus cal... 150 1e-035
gb|DR058721.1|DR058721 RTNIT1_13_B05.g1_A029 Roots minus ni... 150 1e-035
gb|DR089794.1|DR089794 RTAL1_10_G10.g1_A029 Roots plus adde... 150 1e-035
gb|DR091888.1|DR091888 RTAL1_24_D06.g1_A029 Roots plus adde... 150 1e-035
gb|DR385882.1|DR385882 RTHG1_11_A07.g1_A029 Roots plus adde... 150 1e-035
gb|DR682838.1|DR682838 EST1072913 Normalized pine embryo li... 150 1e-035
gb|DR683008.1|DR683008 EST1073083 Normalized pine embryo li... 150 1e-035
gb|DR683009.1|DR683009 EST1073084 Normalized pine embryo li... 150 1e-035
gb|DR688845.1|DR688845 EST1078931 Normalized pine embryo li... 150 1e-035
gb|DR694166.1|DR694166 EST1084256 Normalized pine embryo li... 150 1e-035
gb|DT627731.1|DT627731 EST1156480 Subtracted pine embryo li... 150 1e-035
gb|DT631560.1|DT631560 EST1146491 Normalized pine embryo li... 150 1e-035
gb|BQ107356.1|BQ107356 NXLV092_F12_F NXLV (Nsf Xylem Late w... 149 2e-035
gb|BE187297.1|BE187297 NXNV_162_B12_F Nsf Xylem Normal wood... 147 8e-035
gb|CF672548.1|CF672548 RTCNT1_64_H05.b1_A029 Root control P... 147 1e-034
gb|BQ699182.1|BQ699182 NXRV120_E07_F NXRV (Nsf Xylem Root w... 146 1e-034
gb|CX712484.1|CX712484 RTPQ1_2_G01.g2_A032 Roots treated wi... 146 1e-034
gb|AW011230.1|AW011230 ST18C07 Pine TriplEx shoot tip libra... 142 3e-033
gb|DR014618.1|DR014618 HEAT1_50_C10.g1_A029 Root at 37 C fo... 142 4e-033
gb|BG039422.1|BG039422 NXSI_098_H06_F NXSI (Nsf Xylem Side ... 139 2e-032
gb|AW064721.1|AW064721 ST35A02 Pine TriplEx shoot tip libra... 138 3e-032
gb|DR089709.1|DR089709 RTAL1_10_G10.b1_A029 Roots plus adde... 138 3e-032
gb|DR744595.1|DR744595 RTCU1_23_C03.g1_A029 Roots plus adde... 122 3e-027
gb|CO367704.1|CO367704 RTK1_36_B04.b1_A029 Roots minus pota... 121 8e-027
gb|CF475707.1|CF475707 RTWW2_11_G10.g1_A021 Well-watered lo... 120 1e-026
gb|CO199374.1|CO199374 GEO1_20_F02.g1_A029 Root gravitropis... 118 4e-026
gb|DR058638.1|DR058638 RTNIT1_13_B05.b1_A029 Roots minus ni... 118 5e-026
gb|BX253625.1|BX253625 BX253625 Pinus pinaster differenciat... 117 1e-025
gb|DR682839.1|DR682839 EST1072914 Normalized pine embryo li... 113 2e-024
gb|BG318905.1|BG318905 NXPV_021_C11_F NXPV (Nsf Xylem Plani... 110 2e-023
gb|DR012588.1|DR012588 HEAT1_13_G02.g1_A029 Root at 37 C fo... 109 3e-023
gb|BX252707.1|BX252707 BX252707 Pinus pinaster differenciat... 108 4e-023
>gb|DN632101.1|DN632101 EST982917 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACJ76, mRNA sequence
Length = 777
Score = 184 bits (397), Expect = 5e-046
Identities = 71/104 (68%), Positives = 86/104 (82%)
Frame = -2 / +1
Query: 615 MGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLL 436
MG WTI+++L SL GP +MLLYPLYAS+RA+ESPSK+DDEQWL YWILYSF+TL+EM
Sbjct: 88 MGMYWTIVSYLQSLTGPGLMLLYPLYASIRAIESPSKVDDEQWLTYWILYSFLTLVEMAA 267
Query: 435 ESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
+L WIP W+ +KL FIAWLVLP FRGA+FIY +FV EQL K+
Sbjct: 268 ATLFSWIPFWHPVKLAFIAWLVLPQFRGASFIYQRFVGEQLIKY 399
>gb|DT630456.1|DT630456 EST1154868 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME915, mRNA sequence
Length = 830
Score = 184 bits (397), Expect = 5e-046
Identities = 71/104 (68%), Positives = 86/104 (82%)
Frame = -2 / +2
Query: 615 MGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLL 436
MG WTI+++L SL GP +MLLYPLYAS+RA+ESPSK+DDEQWL YWILYSF+TL+EM
Sbjct: 110 MGMYWTIVSYLQSLTGPGLMLLYPLYASIRAIESPSKVDDEQWLTYWILYSFLTLVEMAA 289
Query: 435 ESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
+L WIP W+ +KL FIAWLVLP FRGA+FIY +FV EQL K+
Sbjct: 290 ATLFSWIPFWHPVKLAFIAWLVLPQFRGASFIYQRFVGEQLIKY 421
>gb|CX645893.1|CX645893 COLD1_5_H12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_5_H12_A029 5', mRNA sequence
Length = 583
Score = 152 bits (327), Expect = 2e-036
Identities = 58/104 (55%), Positives = 76/104 (73%)
Frame = -2 / +1
Query: 615 MGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLL 436
MG I H + AGP VMLLYPLYAS+RA+ESPS+LDD+QWL YWILYS +TL E+
Sbjct: 19 MGFFGAIARHFDTFAGPVVMLLYPLYASIRAIESPSELDDQQWLTYWILYSLITLFELSF 198
Query: 435 ESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRKH 304
++ WIPIW +KL+ WLV P F GAA+IY+K++R+ + K+
Sbjct: 199 YKVLAWIPIWPYVKLVLSFWLVSPMFNGAAYIYEKYIRKLVSKY 330
>gb|BX253213.1|BX253213 BX253213 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP079H01 similar to POLYPOSIS LOCUS PROTEIN,
mRNA sequence
Length = 501
Score = 150 bits (322), Expect = 1e-035
Identities = 55/98 (56%), Positives = 74/98 (75%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L T+L ++ AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 75 LKTVLYNIDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 254
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W +KL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 255 LEWLPFWPYVKLIATCWLVLPVFNGAAYVYENFVRQML 368
>gb|CF672623.1|CF672623 RTCNT1_64_H05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_64_H05_A029 5', mRNA sequence
Length = 729
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 132 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 311
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 312 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 425
>gb|CO160128.1|CO160128 FLD1_19_A03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_A03_A029 3', mRNA sequence
Length = 759
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L L GP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 1 LKAVLYNLDILXGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 180
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 181 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 294
>gb|CO160201.1|CO160201 FLD1_19_A03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_19_A03_A029 5', mRNA sequence
Length = 750
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 131 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 310
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 311 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 424
>gb|CV035712.1|CV035712 RTNACL1_42_A06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_42_A06_A029 3', mRNA sequence
Length = 822
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / -3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 451 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 272
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 271 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 158
>gb|CV035788.1|CV035788 RTNACL1_42_A06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_42_A06_A029 5', mRNA sequence
Length = 713
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / -3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 690 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 511
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 510 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 397
>gb|DN609369.1|DN609369 EST962419 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAC05, mRNA sequence
Length = 635
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 285 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 464
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 465 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 578
>gb|DR012508.1|DR012508 HEAT1_13_G02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_G02_A029 3', mRNA sequence
Length = 826
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 72 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 251
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 252 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 365
>gb|DR014767.1|DR014767 HEAT1_51_B06.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_B06_A029 5', mRNA sequence
Length = 870
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 219 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 398
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 399 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 512
>gb|DR017755.1|DR017755 STRS1_18_G04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_G04_A034 3', mRNA sequence
Length = 846
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 110 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 289
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 290 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 403
>gb|DR017840.1|DR017840 STRS1_18_G04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_G04_A034 5', mRNA sequence
Length = 718
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 236 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 415
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 416 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 529
>gb|DR055871.1|DR055871 RTCA1_26_B02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_26_B02_A029 5', mRNA sequence
Length = 667
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 82 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 261
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 262 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 375
>gb|DR058721.1|DR058721 RTNIT1_13_B05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_B05_A029 5', mRNA sequence
Length = 619
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 267 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 446
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 447 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 560
>gb|DR089794.1|DR089794 RTAL1_10_G10.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_G10_A029 5', mRNA sequence
Length = 665
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 115 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 294
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 295 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 408
>gb|DR091888.1|DR091888 RTAL1_24_D06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_D06_A029 5', mRNA sequence
Length = 720
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 181 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 360
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 361 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 474
>gb|DR385882.1|DR385882 RTHG1_11_A07.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_A07_A029 5', mRNA sequence
Length = 825
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 186 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 365
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 366 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 479
>gb|DR682838.1|DR682838 EST1072913 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAC56, mRNA sequence
Length = 895
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / -1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 772 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 593
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 592 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 479
>gb|DR683008.1|DR683008 EST1073083 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD72, mRNA sequence
Length = 831
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / -2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 740 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 561
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 560 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 447
>gb|DR683009.1|DR683009 EST1073084 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAD72 3' end, mRNA sequence
Length = 687
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 331 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 510
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 511 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 624
>gb|DR688845.1|DR688845 EST1078931 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACB29 3' end, mRNA sequence
Length = 846
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 279 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 458
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 459 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 572
>gb|DR694166.1|DR694166 EST1084256 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE887 3' end, mRNA sequence
Length = 627
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 128 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 307
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 308 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 421
>gb|DT627731.1|DT627731 EST1156480 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCQ04 5' end, mRNA sequence
Length = 638
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / -3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 354 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 175
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 174 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 61
>gb|DT631560.1|DT631560 EST1146491 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFA13 3' end, mRNA sequence
Length = 800
Score = 150 bits (322), Expect = 1e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 331 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 510
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 511 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 624
>gb|BQ107356.1|BQ107356 NXLV092_F12_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV092_F12 5' similar to Arabidopsis thaliana
sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 560
Score = 149 bits (320), Expect = 2e-035
Identities = 56/98 (57%), Positives = 73/98 (74%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 136 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 315
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 316 L*WLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 429
>gb|BE187297.1|BE187297 NXNV_162_B12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_162_B12 5' similar to Arabidopsis thaliana
sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 574
Score = 147 bits (316), Expect = 8e-035
Identities = 55/98 (56%), Positives = 72/98 (73%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 39 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 218
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FV + L
Sbjct: 219 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVXQML 332
>gb|CF672548.1|CF672548 RTCNT1_64_H05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_64_H05_A029 3', mRNA sequence
Length = 765
Score = 147 bits (315), Expect = 1e-034
Identities = 54/91 (59%), Positives = 69/91 (75%)
Frame = -2 / +1
Query: 585 LHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIW 406
L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L+ W+P W
Sbjct: 1 LDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFW 180
Query: 405 YELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 181 PYLKLIATCWLVLPVFNGAAYVYENFVRQML 273
>gb|BQ699182.1|BQ699182 NXRV120_E07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV120_E07 5' similar to Arabidopsis thaliana
sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 524
Score = 146 bits (314), Expect = 1e-034
Identities = 55/98 (56%), Positives = 72/98 (73%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LL PLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 94 LKAVLYNLDIFAGPVVTLLXPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 273
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GAA++Y+ FVR+ L
Sbjct: 274 LEWLPFWPYLKLIATCWLVLPVFNGAAYVYENFVRQML 387
>gb|CX712484.1|CX712484 RTPQ1_2_G01.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_2_G01_A032 5', mRNA sequence
Length = 903
Score = 146 bits (314), Expect = 1e-034
Identities = 53/92 (57%), Positives = 71/92 (77%)
Frame = -2 / -1
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+ H+ +A PTVML+YPLYAS+RAM SPS+LDD+QWL YW+LYS +TL E+ ++ W
Sbjct: 867 VXKHIIKVAWPTVMLIYPLYASIRAMXSPSELDDQQWLTYWVLYSLITLFELTFYKILAW 688
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +KL+ + WLVLP F GAA+IY+ +VR
Sbjct: 687 IPIWPYVKLVLLFWLVLPMFNGAAYIYENYVR 592
>gb|AW011230.1|AW011230 ST18C07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18C07, mRNA sequence
Length = 533
Score = 142 bits (305), Expect = 3e-033
Identities = 53/98 (54%), Positives = 70/98 (71%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 226 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 405
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
+ W+P W LKL+ WLVLP F GA ++Y+ V+ L
Sbjct: 406 LEWLPFWPYLKLIATCWLVLPVFNGAXYVYENXVKXML 519
>gb|DR014618.1|DR014618 HEAT1_50_C10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_C10_A029 5', mRNA sequence
Length = 778
Score = 142 bits (304), Expect = 4e-033
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = -2 / +3
Query: 567 PTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLL 388
P V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L+ W+P W LKL+
Sbjct: 27 PVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYLKLI 206
Query: 387 FIAWLVLPNFRGAAFIYDKFVREQL 313
WLVLP F GAA++Y+ FVR+ L
Sbjct: 207 ATCWLVLPVFNGAAYVYENFVRQML 281
>gb|BG039422.1|BG039422 NXSI_098_H06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_098_H06 5' similar to Arabidopsis thaliana
sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 553
Score = 139 bits (299), Expect = 2e-032
Identities = 52/90 (57%), Positives = 66/90 (73%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD QWL YW+LYSF+TL E+ L
Sbjct: 282 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDXQWLTYWVLYSFITLFELSFSRL 461
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIY 337
+ W+P W LKL+ WLVLP F GAA++Y
Sbjct: 462 LXWLPFWPYLKLIATCWLVLPXFNGAAYVY 551
>gb|AW064721.1|AW064721 ST35A02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST35A02, mRNA sequence
Length = 566
Score = 138 bits (297), Expect = 3e-032
Identities = 51/91 (56%), Positives = 67/91 (73%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 264 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 443
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYD 334
+ W+P W LKL+ WLVLP F GA ++Y+
Sbjct: 444 LEWLPFWPYLKLIATCWLVLPVFNGATYVYE 536
>gb|DR089709.1|DR089709 RTAL1_10_G10.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_G10_A029 3', mRNA sequence
Length = 712
Score = 138 bits (297), Expect = 3e-032
Identities = 50/83 (60%), Positives = 65/83 (78%)
Frame = -2 / +2
Query: 561 VMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFI 382
V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L+ W+P W LKL+
Sbjct: 2 VTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYLKLIAT 181
Query: 381 AWLVLPNFRGAAFIYDKFVREQL 313
WLVLP F GAA++Y+ FVR+ L
Sbjct: 182 CWLVLPVFNGAAYVYENFVRQML 250
>gb|DR744595.1|DR744595 RTCU1_23_C03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_23_C03_A029 5', mRNA sequence
Length = 599
Score = 122 bits (261), Expect = 3e-027
Identities = 43/75 (57%), Positives = 58/75 (77%)
Frame = -2 / -2
Query: 537 ASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFIAWLVLPNF 358
+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L+ W+P W LKL+ WLVLP F
Sbjct: 598 SSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYLKLIATCWLVLPVF 419
Query: 357 RGAAFIYDKFVREQL 313
GAA++Y+ FVR+ L
Sbjct: 418 NGAAYVYENFVRQML 374
>gb|CO367704.1|CO367704 RTK1_36_B04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_B04_A029 3', mRNA sequence
Length = 837
Score = 121 bits (258), Expect = 8e-027
Identities = 42/76 (55%), Positives = 58/76 (76%)
Frame = -2 / -2
Query: 540 YASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFIAWLVLPN 361
Y+S+RA+ESPS+LDD+QWL YW+ YSF+TL E+ L+ W+P W +KL+ WLVLP
Sbjct: 329 YSSIRAIESPSRLDDQQWLTYWVPYSFITLFELSFSRLLEWLPFWPYVKLIATCWLVLPV 150
Query: 360 FRGAAFIYDKFVREQL 313
F GAA++Y+ FVR+ L
Sbjct: 149 FNGAAYVYENFVRQML 102
>gb|CF475707.1|CF475707 RTWW2_11_G10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_G10_A021 5', mRNA sequence
Length = 731
Score = 120 bits (256), Expect = 1e-026
Identities = 42/73 (57%), Positives = 56/73 (76%)
Frame = -2 / -3
Query: 531 VRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFIAWLVLPNFRG 352
+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L+ W+P W LKL+ WLVLP F G
Sbjct: 729 IRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYLKLIATCWLVLPVFNG 550
Query: 351 AAFIYDKFVREQL 313
AA++Y+ FVR+ L
Sbjct: 549 AAYVYENFVRQML 511
>gb|CO199374.1|CO199374 GEO1_20_F02.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_20_F02_A029 5', mRNA sequence
Length = 660
Score = 118 bits (253), Expect = 4e-026
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = -2 / -2
Query: 528 RAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFIAWLVLPNFRGA 349
RA+ESPS+LDD+QWL YW+LYSF+TL E+ L+ W+P W LKL+ WLVLP F GA
Sbjct: 659 RAIESPSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYLKLIATCWLVLPVFNGA 480
Query: 348 AFIYDKFVREQL 313
A++Y+ FVR+ L
Sbjct: 479 AYVYENFVRQML 444
>gb|DR058638.1|DR058638 RTNIT1_13_B05.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_B05_A029 3', mRNA sequence
Length = 659
Score = 118 bits (252), Expect = 5e-026
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = -2 / +1
Query: 528 RAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFIAWLVLPNFRGA 349
RA+ESPS+LDD+QWL YW+LYSF+TL E+ L+ W+P W LKL+ WLVLP F GA
Sbjct: 1 RAIESPSRLDDQQWLTYWVLYSFITLXELSFSRLLEWLPFWPYLKLIATCWLVLPVFNGA 180
Query: 348 AFIYDKFVREQL 313
A++Y+ FVR+ L
Sbjct: 181 AYVYENFVRQML 216
>gb|BX253625.1|BX253625 BX253625 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP086B03 similar to POLYPOSIS LOCUS PROTEIN,
mRNA sequence
Length = 500
Score = 117 bits (250), Expect = 1e-025
Identities = 42/77 (54%), Positives = 57/77 (74%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L T+L ++ AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 269 LKTVLYNIDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 448
Query: 426 IYWIPIWYELKLLFIAW 376
+ W+P W +KL+ W
Sbjct: 449 LEWLPFWPYVKLIATCW 499
>gb|DR682839.1|DR682839 EST1072914 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAC56 3' end, mRNA sequence
Length = 803
Score = 113 bits (241), Expect = 2e-024
Identities = 42/72 (58%), Positives = 54/72 (75%)
Frame = -2 / +2
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 587 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 766
Query: 426 IYWIPIWYELKL 391
+ W+P W LKL
Sbjct: 767 LEWLPFWAYLKL 802
>gb|BG318905.1|BG318905 NXPV_021_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_021_C11 5' similar to Arabidopsis
thaliana sequence At1g74520 AtHVA22a see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 503
Score = 110 bits (234), Expect = 2e-023
Identities = 44/83 (53%), Positives = 57/83 (68%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 252 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 431
Query: 426 IYWIPIWYELKLLFIAWLVLPNF 358
+ W+P L L+ LVL F
Sbjct: 432 LEWLPXXXYLXLIATCXLVLXXF 500
>gb|DR012588.1|DR012588 HEAT1_13_G02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_G02_A029 5', mRNA sequence
Length = 722
Score = 109 bits (232), Expect = 3e-023
Identities = 39/67 (58%), Positives = 51/67 (76%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L +L AGP V LLYPLY+S+RA+ESPS+LDD+QWL YW+LYSF+TL E+ L
Sbjct: 522 LKAVLYNLDIFAGPVVTLLYPLYSSIRAIESPSRLDDQQWLTYWVLYSFITLFELSFSRL 701
Query: 426 IYWIPIW 406
+ W+P W
Sbjct: 702 LEWLPFW 722
>gb|BX252707.1|BX252707 BX252707 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069D07 similar to POLYPOSIS LOCUS PROTEIN,
mRNA sequence
Length = 676
Score = 108 bits (231), Expect = 4e-023
Identities = 37/67 (55%), Positives = 50/67 (74%)
Frame = -2 / +2
Query: 513 PSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYD 334
PS+LDD+QWL YW+LYSF+TL E+ L+ W+P W +KL+ WLVLP F GAA++Y+
Sbjct: 2 PSRLDDQQWLTYWVLYSFITLFELSFSRLLEWLPFWPYVKLIATCWLVLPVFNGAAYVYE 181
Query: 333 KFVREQL 313
FVR+ L
Sbjct: 182 NFVRQML 202
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 391,176,586
Number of Sequences: 355925
Number of extensions: 5797496
Number of successful extensions: 54265
Number of sequences better than 1.0e-020: 56
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11430540740
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)