TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441100.2.1
(646 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pin... 136 1e-031
gb|DR071265.1|DR071265 RTDK1_18_F12.g1_A029 Roots, dark Pin... 136 1e-031
gb|DR099748.1|DR099748 STRR1_58_E10.b1_A033 Stem Response R... 136 1e-031
gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus adde... 136 1e-031
gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciat... 134 6e-031
gb|DR057850.1|DR057850 RTNIT1_8_E08.b1_A029 Roots minus nit... 134 6e-031
gb|DR388190.1|DR388190 RTHG1_26_E04.g1_A029 Roots plus adde... 131 6e-030
gb|BX682993.1|BX682993 BX682993 Pinus pinaster differenciat... 111 3e-024
>gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E03_A029 3', mRNA sequence
Length = 811
Score = 136 bits (292), Expect = 1e-031
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
VEACK ATG +I VEYL RRPGDYAEVYSDPSKI+ ELNW+A+YT+L +SL AWKWQKA
Sbjct: 310 VEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELNWSAKYTNLKESLTVAWKWQKA 489
Query: 189 HPNGYG 206
HPNGYG
Sbjct: 490 HPNGYG 507
Score = 104 bits (222), Expect = 6e-022
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = -1 / -3
Query: 205 PYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLIEAPVA 26
PYP GCAFCHF A RL R VY+A Q +S I +GSLYTSA*SPGLR RYST+I PVA
Sbjct: 506 PYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 327
Query: 25 FLQASTRA 2
LQAST +
Sbjct: 326 ALQASTNS 303
>gb|DR071265.1|DR071265 RTDK1_18_F12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_F12_A029 5', mRNA sequence
Length = 527
Score = 136 bits (292), Expect = 1e-031
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = +3 / -1
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
VEACK ATG +I VEYL RRPGDYAEVYSDPSKI+ ELNW+A+YT+L +SL AWKWQKA
Sbjct: 470 VEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELNWSAKYTNLKESLTVAWKWQKA 291
Query: 189 HPNGYG 206
HPNGYG
Sbjct: 290 HPNGYG 273
Score = 104 bits (222), Expect = 6e-022
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = -1 / +1
Query: 205 PYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLIEAPVA 26
PYP GCAFCHF A RL R VY+A Q +S I +GSLYTSA*SPGLR RYST+I PVA
Sbjct: 274 PYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 453
Query: 25 FLQASTRA 2
LQAST +
Sbjct: 454 ALQASTNS 477
>gb|DR099748.1|DR099748 STRR1_58_E10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_58_E10_A033 3', mRNA sequence
Length = 748
Score = 136 bits (292), Expect = 1e-031
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = +3 / +2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
VEACK ATG +I VEYL RRPGDYAEVYSDPSKI+ ELNW+A+YT+L +SL AWKWQKA
Sbjct: 95 VEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELNWSAKYTNLKESLTVAWKWQKA 274
Query: 189 HPNGYG 206
HPNGYG
Sbjct: 275 HPNGYG 292
Score = 104 bits (222), Expect = 6e-022
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = -1 / -2
Query: 205 PYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLIEAPVA 26
PYP GCAFCHF A RL R VY+A Q +S I +GSLYTSA*SPGLR RYST+I PVA
Sbjct: 291 PYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 112
Query: 25 FLQASTRA 2
LQAST +
Sbjct: 111 ALQASTNS 88
>gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_F04_A029 5', mRNA sequence
Length = 638
Score = 136 bits (292), Expect = 1e-031
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = +3 / +2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
VEACK ATG +I VEYL RRPGDYAEVYSDPSKI+ ELNW+A+YT+L +SL AWKWQKA
Sbjct: 365 VEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELNWSAKYTNLKESLTVAWKWQKA 544
Query: 189 HPNGYG 206
HPNGYG
Sbjct: 545 HPNGYG 562
Score = 104 bits (222), Expect = 6e-022
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = -1 / -3
Query: 205 PYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLIEAPVA 26
PYP GCAFCHF A RL R VY+A Q +S I +GSLYTSA*SPGLR RYST+I PVA
Sbjct: 561 PYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 382
Query: 25 FLQASTRA 2
LQAST +
Sbjct: 381 ALQASTNS 358
>gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088D07, mRNA sequence
Length = 673
Score = 134 bits (287), Expect = 6e-031
Identities = 51/66 (77%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
VEACK ATG +I VEYL RRPGDYAEVYSDPSKI+ EL+W+A+YT+L +SL AWKWQKA
Sbjct: 319 VEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELSWSAKYTNLKESLTVAWKWQKA 498
Query: 189 HPNGYG 206
HPNGYG
Sbjct: 499 HPNGYG 516
Score = 106 bits (226), Expect = 2e-022
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = -1 / -3
Query: 205 PYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLIEAPVA 26
PYP GCAFCHF A RL R VY+A QL+S I +GSLYTSA*SPGLR RYST+I PVA
Sbjct: 515 PYPLGCAFCHFQATVRLSLRFVYFADQLNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 336
Query: 25 FLQASTRA 2
LQAST +
Sbjct: 335 ALQASTNS 312
>gb|DR057850.1|DR057850 RTNIT1_8_E08.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_E08_A029 3', mRNA sequence
Length = 748
Score = 134 bits (287), Expect = 6e-031
Identities = 51/66 (77%), Positives = 58/66 (87%)
Frame = +3 / +2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
VEACK ATG +I VEYL RRPGD+AEVYSDPSKI+ ELNW+A+YT+L +SL AWKWQKA
Sbjct: 200 VEACKAATGVNITVEYLGRRPGDHAEVYSDPSKINQELNWSAKYTNLKESLTVAWKWQKA 379
Query: 189 HPNGYG 206
HPNGYG
Sbjct: 380 HPNGYG 397
Score = 104 bits (222), Expect = 6e-022
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = -1 / -2
Query: 205 PYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLIEAPVA 26
PYP GCAFCHF A RL R VY+A Q +S I +GSLYTSA*SPGLR RYST+I PVA
Sbjct: 396 PYPLGCAFCHFQATVRLSLRFVYFADQFNSWLILEGSLYTSA*SPGLRPRYSTVILTPVA 217
Query: 25 FLQASTRA 2
LQAST +
Sbjct: 216 ALQASTNS 193
>gb|DR388190.1|DR388190 RTHG1_26_E04.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_26_E04_A029 5', mRNA sequence
Length = 540
Score = 131 bits (280), Expect = 6e-030
Identities = 50/66 (75%), Positives = 55/66 (83%)
Frame = +3 / -1
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
VEACK ATG + VEYL RRPGDYAEVYSDPSKI+ EL W A+YT+L +SL AWKWQKA
Sbjct: 447 VEACKAATGVNFSVEYLGRRPGDYAEVYSDPSKINQELKWFAKYTNLKESLTVAWKWQKA 268
Query: 189 HPNGYG 206
HPNGYG
Sbjct: 267 HPNGYG 250
>gb|BX682993.1|BX682993 BX682993 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126F07 similar to UDP-glucose 4-epimerase (EC
5.1.3.2), mRNA sequence
Length = 624
Score = 111 bits (238), Expect = 3e-024
Identities = 43/64 (67%), Positives = 51/64 (79%)
Frame = +3 / +2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
VE+CK+ATG +I + L RRPGDYAEVYSDPSKI ELNW AQYT+L +SLA AW W++
Sbjct: 431 VESCKQATGVNITIVSLERRPGDYAEVYSDPSKIQRELNWFAQYTNLTESLAVAWSWRRT 610
Query: 189 HPNG 200
HP G
Sbjct: 611 HPVG 622
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 328,105,102
Number of Sequences: 355925
Number of extensions: 4925135
Number of successful extensions: 44095
Number of sequences better than 1.0e-020: 9
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 8734658490
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)