TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441058.2.1
(1000 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF478585.1|CF478585 RTWW3_16_G03.b1_A022 Well-watered lo... 171 7e-042
gb|CX713426.1|CX713426 RTPQ1_9_D07.b1_A032 Roots treated wi... 143 2e-033
gb|BM133196.1|BM133196 NXLV_001_E01_F NXLV (Nsf Xylem Late ... 111 8e-024
>gb|CF478585.1|CF478585 RTWW3_16_G03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_G03_A022 3', mRNA sequence
Length = 569
Score = 171 bits (368), Expect = 7e-042
Identities = 72/110 (65%), Positives = 89/110 (80%)
Frame = +1 / +3
Query: 421 KVHPTSKIGPNVSISANARVGAGARLINCIILDDVEIMENAVVIHSIVGWKSSIGKWSRV 600
K+HPT+KIGPNVSISANAR+G G RL +CIILDDVE+ +NA+V+H+I+GWK+SIGKW+RV
Sbjct: 3 KIHPTAKIGPNVSISANARIGPGVRLRDCIILDDVEVQDNAIVMHAIIGWKASIGKWARV 182
Query: 601 QGEGDHNAKLGITILGEAXXXXXXXXXXNSIVLPNKTLNVSVQEEIIL** 750
QGE ++ AK GI+ILGEA +S VLP+K LN SVQ EIIL**
Sbjct: 183 QGERNYGAKNGISILGEAVTVEDEVVVLSSTVLPHKALNQSVQGEIIL** 332
>gb|CX713426.1|CX713426 RTPQ1_9_D07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_9_D07_A032 3', mRNA sequence
Length = 479
Score = 143 bits (306), Expect = 2e-033
Identities = 61/95 (64%), Positives = 73/95 (76%)
Frame = +1 / +3
Query: 481 GAGARLINCIILDDVEIMENAVVIHSIVGWKSSIGKWSRVQGEGDHNAKLGITILGEAXX 660
GAG R+I CIILDDVE+ EN++V+HSIVGWKSSIG+WSRVQGE ++ +KLGITILGE
Sbjct: 3 GAGVRMIGCIILDDVELKENSIVMHSIVGWKSSIGRWSRVQGEANYTSKLGITILGEDVT 182
Query: 661 XXXXXXXXNSIVLPNKTLNVSVQEEIIL**PSFFV 765
N IVLP+K LN+SVQEEIIL* F+
Sbjct: 183 VEDEVVVANCIVLPHKMLNMSVQEEIIL*LVLIFI 287
>gb|BM133196.1|BM133196 NXLV_001_E01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_001_E01 5' similar to Arabidopsis thaliana
sequence At1g74910 putative GDP-mannose
pyrophosphorylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 451
Score = 111 bits (237), Expect = 8e-024
Identities = 48/77 (62%), Positives = 58/77 (75%)
Frame = +1 / +1
Query: 535 ENAVVIHSIVGWKSSIGKWSRVQGEGDHNAKLGITILGEAXXXXXXXXXXNSIVLPNKTL 714
EN++V+HSIVGWKSSIG+WSRVQGE ++ +KLGITILGE N IVLP+K L
Sbjct: 22 ENSIVMHSIVGWKSSIGRWSRVQGEANYTSKLGITILGEDVTVEDEVVAANCIVLPHKML 201
Query: 715 NVSVQEEIIL**PSFFV 765
N+SVQEEIIL* F+
Sbjct: 202 NMSVQEEIIL*LVLIFI 252
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 521,533,340
Number of Sequences: 355925
Number of extensions: 7409830
Number of successful extensions: 35712
Number of sequences better than 1.0e-020: 4
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 14943719880
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)