TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440450.2.1
(1291 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO368099.1|CO368099 RTK1_38_D05.g1_A029 Roots minus pota... 138 8e-038
gb|DR691914.1|DR691914 EST1082001 Normalized pine embryo li... 136 3e-036
gb|DT632764.1|DT632764 EST1147695 Normalized pine embryo li... 139 1e-034
gb|DR684995.1|DR684995 EST1075072 Normalized pine embryo li... 139 1e-034
gb|DT635465.1|DT635465 EST1150396 Normalized pine embryo li... 139 1e-034
gb|DR689410.1|DR689410 EST1079496 Normalized pine embryo li... 139 1e-034
gb|DR111006.1|DR111006 RTS1_14_D07.g1_A029 Roots minus sulf... 138 2e-034
gb|DR682128.1|DR682128 EST1072203 Normalized pine embryo li... 138 2e-034
gb|CF401990.1|CF401990 RTWW1_16_G12.g1_A015 Well-watered lo... 138 2e-034
gb|DT630782.1|DT630782 EST1145713 Normalized pine embryo li... 138 2e-034
gb|DR689184.1|DR689184 EST1079270 Normalized pine embryo li... 138 4e-034
>gb|CO368099.1|CO368099 RTK1_38_D05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_38_D05_A029 5', mRNA sequence
Length = 851
Score = 138 bits (297), Expect(3) = 8e-038
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = -2 / +3
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+V+ + LVG + K ERVTDV F LDDGTG+++V RW N+ ++ EMA
Sbjct: 234 SDENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMA 413
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ +N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 414 EVHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 560
Score = 35.0 bits (70), Expect(3) = 8e-038
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2 / +3
Query: 567 ISNLVLSVFHDPSVMDQEHGLHIKDVIDRL 478
++ V S+F +P+ + EHG+H+ DV+ RL
Sbjct: 717 LNGRVQSIFEEPANLAIEHGVHVDDVVRRL 806
Score = 28.1 bits (55), Expect(3) = 8e-038
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2 / +3
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + LLPLTVKQ A Q D ++
Sbjct: 153 SSVRKSGTGTGLLPLTVKQISQATQKLSDENS 248
>gb|DR691914.1|DR691914 EST1082001 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADF64 3' end, mRNA sequence
Length = 764
Score = 136 bits (291), Expect(3) = 3e-036
Identities = 55/109 (50%), Positives = 76/109 (69%)
Frame = -2 / +2
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+++ + LVG + K ERVTD F LDDGTG+++ RW N+A ++ EMA
Sbjct: 143 SDENSNFTIDGVDINNVTLVGMVFNKEERVTDASFYLDDGTGRLEAKRWVNDAMESAEMA 322
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 323 EVQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 469
Score = 35.0 bits (70), Expect(3) = 3e-036
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2 / +2
Query: 567 ISNLVLSVFHDPSVMDQEHGLHIKDVIDRL 478
++ V S+F +P+ + EHG+H+ DV+ RL
Sbjct: 626 LNGRVQSIFEEPANLAIEHGVHVDDVVRRL 715
Score = 25.4 bits (49), Expect(3) = 3e-036
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2 / +2
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + L PLTVKQ A Q D ++
Sbjct: 62 SSVRKSGTGTGLRPLTVKQISQATQKLSDENS 157
>gb|DT632764.1|DT632764 EST1147695 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFN50 3' end, mRNA sequence
Length = 859
Score = 139 bits (299), Expect(2) = 1e-034
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = -2 / +2
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+++ + LVG + K ERVTDV F LDDGTG+++V RW N+A ++ EMA
Sbjct: 332 SDENSNFTIDGVDINNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDAMESAEMA 511
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 512 EVQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 658
Score = 28.1 bits (55), Expect(2) = 1e-034
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2 / +2
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + LLPLTVKQ A Q D ++
Sbjct: 251 SSVRKSGTGTGLLPLTVKQISQATQKLSDENS 346
>gb|DR684995.1|DR684995 EST1075072 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAY91 3' end, mRNA sequence
Length = 813
Score = 139 bits (299), Expect(2) = 1e-034
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = -2 / +3
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+++ + LVG + K ERVTDV F LDDGTG+++V RW N+A ++ EMA
Sbjct: 324 SDENSNFTIDGVDINNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDAMESAEMA 503
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 504 EVQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 650
Score = 28.1 bits (55), Expect(2) = 1e-034
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2 / +3
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + LLPLTVKQ A Q D ++
Sbjct: 243 SSVRKSGTGTGLLPLTVKQISQATQKLSDENS 338
>gb|DT635465.1|DT635465 EST1150396 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGH16 3' end, mRNA sequence
Length = 801
Score = 139 bits (299), Expect(2) = 1e-034
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = -2 / +3
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+++ + LVG + K ERVTDV F LDDGTG+++V RW N+A ++ EMA
Sbjct: 303 SDENSNFTIDGVDINNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDAMESAEMA 482
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 483 EVQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 629
Score = 28.1 bits (55), Expect(2) = 1e-034
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2 / +3
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + LLPLTVKQ A Q D ++
Sbjct: 222 SSVRKSGTGTGLLPLTVKQISQATQKLSDENS 317
>gb|DR689410.1|DR689410 EST1079496 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACI28 3' end, mRNA sequence
Length = 785
Score = 139 bits (299), Expect(2) = 1e-034
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = -2 / +1
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+++ + LVG + K ERVTDV F LDDGTG+++V RW N+A ++ EMA
Sbjct: 295 SDENSNFTIDGVDINNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDAMESAEMA 474
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 475 EVQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 621
Score = 28.1 bits (55), Expect(2) = 1e-034
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2 / +1
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + LLPLTVKQ A Q D ++
Sbjct: 214 SSVRKSGTGTGLLPLTVKQISQATQKLSDENS 309
>gb|DR111006.1|DR111006 RTS1_14_D07.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_14_D07_A029 5', mRNA sequence
Length = 738
Score = 138 bits (297), Expect(2) = 2e-034
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = -2 / +1
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+V+ + LVG + K ERVTDV F LDDGTG+++V RW N+ ++ EMA
Sbjct: 244 SDENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMA 423
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ +N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 424 EVHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 570
Score = 28.1 bits (55), Expect(2) = 2e-034
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2 / +1
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + LLPLTVKQ A Q D ++
Sbjct: 163 SSVRKSGTGTGLLPLTVKQISQATQKLSDENS 258
>gb|DR682128.1|DR682128 EST1072203 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA734 3' end, mRNA sequence
Length = 688
Score = 138 bits (297), Expect(2) = 2e-034
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = -2 / +3
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+V+ + LVG + K ERVTDV F LDDGTG+++V RW N+ ++ EMA
Sbjct: 183 SDENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMA 362
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ +N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 363 EVHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 509
Score = 28.1 bits (55), Expect(2) = 2e-034
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2 / +3
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + LLPLTVKQ A Q D ++
Sbjct: 102 SSVRKSGTGTGLLPLTVKQISQATQKLSDENS 197
>gb|CF401990.1|CF401990 RTWW1_16_G12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_G12_A015 5', mRNA sequence
Length = 657
Score = 138 bits (297), Expect(2) = 2e-034
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = -2 / +3
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+V+ + LVG + K ERVTDV F LDDGTG+++V RW N+ ++ EMA
Sbjct: 177 SDENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMA 356
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ +N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 357 EVHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 503
Score = 28.1 bits (55), Expect(2) = 2e-034
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2 / +3
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + LLPLTVKQ A Q D ++
Sbjct: 96 SSVRKSGTGTGLLPLTVKQISQATQKLSDENS 191
>gb|DT630782.1|DT630782 EST1145713 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF021 3' end, mRNA sequence
Length = 552
Score = 138 bits (297), Expect(2) = 2e-034
Identities = 57/109 (52%), Positives = 78/109 (71%)
Frame = -2 / +2
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+V+ + LVG + K ERVTDV F LDDGTG+++V RW N+ ++ EMA
Sbjct: 191 SDENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMA 370
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ +N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 371 EVHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 517
Score = 28.1 bits (55), Expect(2) = 2e-034
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2 / +2
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + LLPLTVKQ A Q D ++
Sbjct: 110 SSVRKSGTGTGLLPLTVKQISQATQKLSDENS 205
>gb|DR689184.1|DR689184 EST1079270 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF22 3' end, mRNA sequence
Length = 825
Score = 138 bits (295), Expect(2) = 4e-034
Identities = 56/109 (51%), Positives = 77/109 (70%)
Frame = -2 / +3
Query: 990 SGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMA 811
S + SNF I+GV+++ + LVG + K ERVTD F LDDGTG+++V RW N+A ++ EMA
Sbjct: 282 SDENSNFTIDGVDINNVTLVGMVFNKEERVTDASFYLDDGTGRLEVKRWVNDAMESAEMA 461
Query: 810 DANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHM 664
+ N YV V G L+ FQ K+ V A++VR VT+FNE+T H L CI VH+
Sbjct: 462 EVQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHL 608
Score = 28.1 bits (55), Expect(2) = 4e-034
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2 / +3
Query: 1068 SGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSN 973
S + K + LLPLTVKQ A Q D ++
Sbjct: 201 SSVRKSGTGTGLLPLTVKQISQATQKLSDENS 296
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 618,113,701
Number of Sequences: 355925
Number of extensions: 8912526
Number of successful extensions: 43391
Number of sequences better than 1.0e-020: 11
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 19952173125
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)