TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440419.2.1
(616 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF667349.1|CF667349 RTCNT1_29_D09.g1_A029 Root control P... 107 2e-036
>gb|CF667349.1|CF667349 RTCNT1_29_D09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_D09_A029 5', mRNA sequence
Length = 809
Score = 107 bits (229), Expect(3) = 2e-036
Identities = 36/73 (49%), Positives = 48/73 (65%)
Frame = -3 / -2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL +PP +NT +FP GWT +RF+ADNPGVW+ HCHIE H +GMGV+F E + ++P
Sbjct: 592 NLINPPKKNTVALFPSGWTAIRFIADNPGVWSLHCHIEAHFFLGMGVVFEEGARKIGRLP 413
Query: 161 NEAVSCGAXATAL 123
+ CG L
Sbjct: 412 RSILGCGGSKAFL 374
Score = 48.3 bits (99), Expect(3) = 2e-036
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3 / -2
Query: 440 SEVHPWHLHGHDFWVL 393
SE+HPWH HGHDFWVL
Sbjct: 688 SEIHPWHFHGHDFWVL 641
Score = 34.5 bits (69), Expect(3) = 2e-036
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3 / -2
Query: 539 NPNTTAGDNVYVLAHNTTVDVLLQNANAL 453
N N G+ VY L N+TVDV+LQN L
Sbjct: 784 NSNARYGNPVYRLEFNSTVDVILQNGKKL 698
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 247,287,853
Number of Sequences: 355925
Number of extensions: 3027315
Number of successful extensions: 45091
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8303856210
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)