TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX682833.1|BX682833 BX682833 Pinus pinaster differenciat... 169 2e-041
gb|AI725069.1|AI725069 968 PtIFG2 Pinus taeda cDNA clone 88... 168 3e-041
gb|BG275115.1|BG275115 NXSI_140_A08_F NXSI (Nsf Xylem Side ... 168 3e-041
gb|BQ702419.1|BQ702419 NXSI_128_D09_F NXSI (Nsf Xylem Side ... 168 3e-041
gb|DR011398.1|DR011398 HEAT1_5_B01.g1_A029 Root at 37 C for... 168 3e-041
gb|DR014658.1|DR014658 HEAT1_50_G04.g1_A029 Root at 37 C fo... 168 3e-041
gb|DR386909.1|DR386909 RTHG1_18_E04.b1_A029 Roots plus adde... 168 3e-041
gb|DR386993.1|DR386993 RTHG1_18_E04.g1_A029 Roots plus adde... 168 3e-041
gb|DR688650.1|DR688650 EST1078735 Normalized pine embryo li... 168 3e-041
gb|DT634676.1|DT634676 EST1149607 Normalized pine embryo li... 168 3e-041
gb|BQ702443.1|BQ702443 NXSI_128_G01_F NXSI (Nsf Xylem Side ... 166 2e-040
gb|DR054550.1|DR054550 RTCA1_18_C03.b1_A029 Roots minus cal... 163 8e-040
gb|DR054628.1|DR054628 RTCA1_18_C03.g1_A029 Roots minus cal... 163 8e-040
gb|BE186991.1|BE186991 NXNV_157_C09_F Nsf Xylem Normal wood... 163 1e-039
gb|BG275589.1|BG275589 NXSI_143_F05_F NXSI (Nsf Xylem Side ... 158 4e-038
gb|BF778304.1|BF778304 NXSI_080_F05_F NXSI (Nsf Xylem Side ... 155 2e-037
gb|BF778689.1|BF778689 NXSI_090_G07_F NXSI (Nsf Xylem Side ... 144 7e-034
gb|BX251364.1|BX251364 BX251364 Pinus pinaster differenciat... 123 1e-027
gb|CR393670.1|CR393670 CR393670 RN Pinus pinaster cDNA clon... 114 4e-026
gb|CO163222.1|CO163222 FLD1_40_F04.b1_A029 Root flooded Pin... 116 2e-025
gb|BQ700454.1|BQ700454 NXRV105_H06_F NXRV (Nsf Xylem Root w... 108 2e-024
gb|BX250295.1|BX250295 BX250295 Pinus pinaster differenciat... 110 8e-024
gb|CD021624.1|CD021624 NXNV_158_B04_F Nsf Xylem Normal wood... 106 1e-022
gb|DR011315.1|DR011315 HEAT1_5_B01.b1_A029 Root at 37 C for... 102 3e-021
>gb|BX682833.1|BX682833 BX682833 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 122E04, mRNA sequence
Length = 615
Score = 169 bits (363), Expect = 2e-041
Identities = 68/76 (89%), Positives = 73/76 (96%)
Frame = -3 / +2
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 68 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 247
Query: 321 KLLNYNTLEKTETS*A 274
KLLNYNTLE++ETS*+
Sbjct: 248 KLLNYNTLERSETS*S 295
>gb|AI725069.1|AI725069 968 PtIFG2 Pinus taeda cDNA clone 8887r, mRNA sequence
Length = 667
Score = 168 bits (362), Expect = 3e-041
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -3 / +2
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 32 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 211
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 212 KLLNYNTLERSETS* 256
>gb|BG275115.1|BG275115 NXSI_140_A08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_140_A08 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 481
Score = 168 bits (362), Expect = 3e-041
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -3 / +3
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 42 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 221
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 222 KLLNYNTLERSETS* 266
>gb|BQ702419.1|BQ702419 NXSI_128_D09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_D09 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 168 bits (362), Expect = 3e-041
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -3 / +1
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 34 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 213
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 214 KLLNYNTLERSETS* 258
>gb|DR011398.1|DR011398 HEAT1_5_B01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_B01_A029 5', mRNA sequence
Length = 552
Score = 168 bits (362), Expect = 3e-041
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -3 / +1
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 16 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 195
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 196 KLLNYNTLERSETS* 240
>gb|DR014658.1|DR014658 HEAT1_50_G04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_G04_A029 5', mRNA sequence
Length = 808
Score = 168 bits (362), Expect = 3e-041
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -3 / -3
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 467 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 288
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 287 KLLNYNTLERSETS* 243
>gb|DR386909.1|DR386909 RTHG1_18_E04.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_18_E04_A029 3', mRNA sequence
Length = 550
Score = 168 bits (362), Expect = 3e-041
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -3 / +2
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 35 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 214
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 215 KLLNYNTLERSETS* 259
>gb|DR386993.1|DR386993 RTHG1_18_E04.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_18_E04_A029 5', mRNA sequence
Length = 528
Score = 168 bits (362), Expect = 3e-041
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -3 / +1
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 16 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 195
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 196 KLLNYNTLERSETS* 240
>gb|DR688650.1|DR688650 EST1078735 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC887 3' end, mRNA sequence
Length = 503
Score = 168 bits (362), Expect = 3e-041
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -3 / +2
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 2 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 181
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 182 KLLNYNTLERSETS* 226
>gb|DT634676.1|DT634676 EST1149607 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG860 3' end, mRNA sequence
Length = 511
Score = 168 bits (362), Expect = 3e-041
Identities = 68/75 (90%), Positives = 72/75 (96%)
Frame = -3 / +1
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 10 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 189
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 190 KLLNYNTLERSETS* 234
>gb|BQ702443.1|BQ702443 NXSI_128_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_128_G01 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 471
Score = 166 bits (356), Expect = 2e-040
Identities = 67/75 (89%), Positives = 71/75 (94%)
Frame = -3 / +1
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC RMLMTHVDLIE
Sbjct: 25 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCXRMLMTHVDLIE 204
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 205 KLLNYNTLERSETS* 249
>gb|DR054550.1|DR054550 RTCA1_18_C03.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_C03_A029 3', mRNA sequence
Length = 769
Score = 163 bits (351), Expect = 8e-040
Identities = 67/75 (89%), Positives = 71/75 (94%)
Frame = -3 / +1
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVR FTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 43 SVKMIIPVRFFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 222
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 223 KLLNYNTLERSETS* 267
>gb|DR054628.1|DR054628 RTCA1_18_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_C03_A029 5', mRNA sequence
Length = 771
Score = 163 bits (351), Expect = 8e-040
Identities = 67/75 (89%), Positives = 71/75 (94%)
Frame = -3 / +2
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVR FTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIE
Sbjct: 38 SVKMIIPVRFFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 217
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTLE++ETS*
Sbjct: 218 KLLNYNTLERSETS* 262
>gb|BE186991.1|BE186991 NXNV_157_C09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_157_C09 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 316
Score = 163 bits (350), Expect = 1e-039
Identities = 66/75 (88%), Positives = 70/75 (93%)
Frame = -3 / +3
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC RMLMTHVDLIE
Sbjct: 24 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCXRMLMTHVDLIE 203
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNTL ++ETS*
Sbjct: 204 KLLNYNTLXRSETS* 248
>gb|BG275589.1|BG275589 NXSI_143_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_143_F05 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 479
Score = 158 bits (339), Expect = 4e-038
Identities = 64/75 (85%), Positives = 68/75 (90%)
Frame = -3 / +3
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC MLMTHVDLIE
Sbjct: 15 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCXXMLMTHVDLIE 194
Query: 321 KLLNYNTLEKTETS* 277
KLLNYNT ++ETS*
Sbjct: 195 KLLNYNTXXRSETS* 239
>gb|BF778304.1|BF778304 NXSI_080_F05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_080_F05 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 280
Score = 155 bits (334), Expect = 2e-037
Identities = 62/73 (84%), Positives = 66/73 (90%)
Frame = -3 / +3
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC MLMTHVDLIE
Sbjct: 42 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCXXMLMTHVDLIE 221
Query: 321 KLLNYNTLEKTET 283
KLLNYNT ++ET
Sbjct: 222 KLLNYNTXXRSET 260
>gb|BF778689.1|BF778689 NXSI_090_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_090_G07 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 233
Score = 144 bits (308), Expect = 7e-034
Identities = 57/66 (86%), Positives = 59/66 (89%)
Frame = -3 / +1
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIE 322
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDAL L RYCC MLMTHVDLIE
Sbjct: 34 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCXXMLMTHVDLIE 213
Query: 321 KLLNYN 304
K NYN
Sbjct: 214 KXXNYN 231
>gb|BX251364.1|BX251364 BX251364 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP048G01 similar to DNA DIRECTED RNA
POLYMERASE, mRNA sequence
Length = 477
Score = 123 bits (263), Expect = 1e-027
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = -3 / +3
Query: 444 KWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 277
KWD YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLE++ETS*
Sbjct: 3 KWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETS* 170
>gb|CR393670.1|CR393670 CR393670 RN Pinus pinaster cDNA clone RN63C03, mRNA sequence
Length = 595
Score = 114 bits (243), Expect(2) = 4e-026
Identities = 47/53 (88%), Positives = 51/53 (96%)
Frame = -3 / +1
Query: 432 YLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS*A 274
YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLE++ETS*+
Sbjct: 76 YLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETS*S 234
Score = 23.5 bits (45), Expect(2) = 4e-026
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3 / +2
Query: 471 FTCGKVIG 448
FTCGKVIG
Sbjct: 44 FTCGKVIG 67
>gb|CO163222.1|CO163222 FLD1_40_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_F04_A029 3', mRNA sequence
Length = 840
Score = 116 bits (247), Expect = 2e-025
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = -3 / +2
Query: 438 DLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 277
D YLDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLE++ETS*
Sbjct: 395 DTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETS* 556
>gb|BQ700454.1|BQ700454 NXRV105_H06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV105_H06 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 108 bits (230), Expect(2) = 2e-024
Identities = 45/56 (80%), Positives = 46/56 (82%)
Frame = -3 / +2
Query: 483 PVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 316
P F KVIGNKWD YLDLLQADY+EGDALDAL L RYCC RMLMTHVDLIEKL
Sbjct: 77 PRSMFHLRKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCMRMLMTHVDLIEKL 244
Score = 23.5 bits (45), Expect(2) = 2e-024
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3 / +3
Query: 312 NYNTLEKTETS* 277
NYNTL ++ETS*
Sbjct: 249 NYNTLXRSETS* 284
>gb|BX250295.1|BX250295 BX250295 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035A03 similar to DNA DIRECTED RNA
POLYMERASE, mRNA sequence
Length = 466
Score = 110 bits (235), Expect = 8e-024
Identities = 46/51 (90%), Positives = 49/51 (96%)
Frame = -3 / +2
Query: 429 LDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 277
LDLLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLE++ETS*
Sbjct: 2 LDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETS* 154
>gb|CD021624.1|CD021624 NXNV_158_B04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_158_B04 5' similar to Arabidopsis thaliana
sequence At1g61700 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 160
Score = 106 bits (227), Expect = 1e-022
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = -3 / +2
Query: 501 AVKMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCC 358
+VKMIIPVRCFTCGKVIGNKWD YLDLLQADY+E DALDA L RYCC
Sbjct: 17 SVKMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEXDALDAXXLVRYCC 160
>gb|DR011315.1|DR011315 HEAT1_5_B01.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_B01_A029 3', mRNA sequence
Length = 426
Score = 102 bits (217), Expect = 3e-021
Identities = 42/47 (89%), Positives = 45/47 (95%)
Frame = -3 / +2
Query: 417 QADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 277
QADY+EGDALDAL L RYCCRRMLMTHVDLIEKLLNYNTLE++ETS*
Sbjct: 2 QADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLERSETS* 142
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 325,124,856
Number of Sequences: 355925
Number of extensions: 4595315
Number of successful extensions: 44881
Number of sequences better than 1.0e-020: 35
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8141035500
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)