TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430806.2.1
(1380 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT638459.1|DT638459 EST1153390 Normalized pine embryo li... 282 2e-084
gb|DR693916.1|DR693916 EST1084006 Normalized pine embryo li... 253 2e-080
gb|BX251726.1|BX251726 BX251726 Pinus pinaster differenciat... 223 3e-065
gb|CO366212.1|CO366212 RTK1_26_B12.g1_A029 Roots minus pota... 101 5e-047
gb|CV032296.1|CV032296 RTNACL1_7_E02.b1_A029 Roots plus add... 105 3e-041
gb|DR072340.1|DR072340 RTDK1_25_D07.g1_A029 Roots, dark Pin... 108 4e-040
gb|DR088809.1|DR088809 RTAL1_4_E08.g1_A029 Roots plus added... 101 1e-039
gb|CX648085.1|CX648085 COLD1_26_A01.g1_A029 Root cold Pinus... 95 2e-038
gb|CO162958.1|CO162958 FLD1_38_C05.g1_A029 Root flooded Pin... 143 3e-033
gb|DR097074.1|DR097074 STRR1_32_G06.b1_A033 Stem Response R... 140 2e-032
gb|BF518128.1|BF518128 NXSI_035_D01_F NXSI (Nsf Xylem Side ... 134 1e-030
gb|DR023658.1|DR023658 STRS1_59_E01.b1_A034 Shoot tip pitch... 90 2e-029
gb|DR013142.1|DR013142 HEAT1_17_F10.b1_A029 Root at 37 C fo... 84 8e-029
gb|CD027928.1|CD027928 NXNV_069_A02_F Nsf Xylem Normal wood... 127 2e-028
gb|DR693981.1|DR693981 EST1084071 Normalized pine embryo li... 78 4e-028
gb|BE049650.1|BE049650 NXNV_069_A03_F Nsf Xylem Normal wood... 118 1e-025
gb|DR025055.1|DR025055 STRS1_69_G04.b1_A034 Shoot tip pitch... 86 3e-025
gb|DR097148.1|DR097148 STRR1_32_G06.g1_A033 Stem Response R... 116 4e-025
gb|DR015884.1|DR015884 STRS1_6_F12.b1_A034 Shoot tip pitch ... 86 3e-024
gb|DR102041.1|DR102041 STRR1_77_E05.g1_A033 Stem Response R... 68 5e-021
>gb|DT638459.1|DT638459 EST1153390 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHF43 3' end, mRNA sequence
Length = 851
Score = 282 bits (611), Expect(2) = 2e-084
Identities = 107/192 (55%), Positives = 148/192 (77%)
Frame = +2 / +1
Query: 599 EEKGVAIRFVIGRSANRGDSLDRNIDDENRQTKDFLILESHEEAAEELPSKAKIFFSAAV 778
E+KG+ IRFV+GRSANRGD D+ IDDENRQTKDF ILE+H E++E+ K+K++FS A
Sbjct: 130 EDKGIIIRFVLGRSANRGDIYDKAIDDENRQTKDFFILENHVESSEDSSKKSKLYFSNAA 309
Query: 779 EAWDAEFYVKVEDNINLDLAGLIEMLEGRRGSQGLYMGCMKSGMVISEEGQQWYEPEWWK 958
+ WDA+FYVKV+DN+ +++ L ML Y+GCMKSG V S +WYEPE WK
Sbjct: 310 DTWDADFYVKVQDNVFVNIDKLGAMLATHWDKPRAYIGCMKSGEVFSNPSHKWYEPESWK 489
Query: 959 FGDSKTYFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATYVDDDRL 1138
FGD K+YFRHASG ++++S+ +A++I+IN+A LQ+YAH+D+SVGSWM+GL+ ++D+ +L
Sbjct: 490 FGDGKSYFRHASGEMYVVSRAVAQFISINNAILQTYAHEDVSVGSWMLGLSVKHIDESQL 669
Query: 1139 CCSSSRQEKICS 1174
CCS S Q IC+
Sbjct: 670 CCSKSSQGGICA 705
Score = 84.5 bits (178), Expect(4) = 6e-034
Identities = 42/90 (46%), Positives = 51/90 (56%)
Frame = -1 / -1
Query: 1155 LELLQHNRSSST*VAFSPIIHEPTDISSCA*LCSDALFMLM*RAKFFERINKEPEACRKY 976
L+ Q + SS + P IH+PTD SSCA + ALF+ M A + P+A RKY
Sbjct: 686 LDFEQQSWLSSICLTDKPNIHDPTDTSSCAYVWRIALFIEMNCATARDTTYISPDA*RKY 507
Query: 975 VFESPNFHHSGSYHCWPSSLMTIPDFIQPM 886
F SPNFH SGSYH W T PDF+ PM
Sbjct: 506 DFPSPNFHDSGSYHLWLGLEKTSPDFMHPM 417
Score = 65.7 bits (137), Expect(4) = 6e-034
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = -1 / -1
Query: 711 RIKKSFVCRFSSSILRSKLSPRFALRPITKRIATPFSSSFF 589
RIKKSFVCRFSSSI S +SP FALRP TKR+ P SSS F
Sbjct: 242 RIKKSFVCRFSSSIALS*ISPLFALRPRTKRMMIPLSSSSF 120
Score = 51.9 bits (107), Expect(2) = 2e-084
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +2 / +1
Query: 491 QQLLAVIGVYTGFGSRLKRNVFRGSWMPRGDALKKLEE 604
++L+AVIG+ T FG R R+ R SWMP G L+KLEE
Sbjct: 19 RRLMAVIGIMTEFGHRSNRDSIRKSWMPTGTKLRKLEE 132
Score = 25.8 bits (50), Expect(4) = 6e-034
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1 / -1
Query: 603 SSSFFRASPLGIQEPRKTFLLRREPNPV*TPMTA 502
SSSF P+GI + LL PN V P+TA
Sbjct: 131 SSSFLNFVPVGIHDFLIESLLDL*PNSVMIPITA 30
Score = 24.9 bits (48), Expect(4) = 6e-034
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3 / -3
Query: 823 NVIFNFDIKFCIPGFNCSTE 764
N+I N DI+ IPG + E
Sbjct: 354 NIILNLDIEVSIPGISSIAE 295
>gb|DR693916.1|DR693916 EST1084006 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE581 3' end, mRNA sequence
Length = 748
Score = 253 bits (547), Expect(3) = 2e-080
Identities = 97/169 (57%), Positives = 131/169 (77%)
Frame = +2 / +2
Query: 599 EEKGVAIRFVIGRSANRGDSLDRNIDDENRQTKDFLILESHEEAAEELPSKAKIFFSAAV 778
E+KG+ IRFV+GRSANRGD D+ IDDENRQTKDF ILE+H E++E+ K+K++FS A
Sbjct: 122 EDKGIIIRFVLGRSANRGDIYDKAIDDENRQTKDFFILENHVESSEDSSKKSKLYFSNAA 301
Query: 779 EAWDAEFYVKVEDNINLDLAGLIEMLEGRRGSQGLYMGCMKSGMVISEEGQQWYEPEWWK 958
+ WDA+FYVKV+DN+ +++ L ML Y+GCMKSG V S +WYEPE WK
Sbjct: 302 DTWDADFYVKVQDNVFVNIDKLGAMLATHWDKPRAYIGCMKSGEVFSNPSHKWYEPESWK 481
Query: 959 FGDSKTYFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMG 1105
FGD K+YFRHASG ++++S+ +A++I+IN+A LQ+YAH+D+SVGSWM G
Sbjct: 482 FGDGKSYFRHASGEMYVVSRAVAQFISINNAILQTYAHEDVSVGSWMFG 628
Score = 82.6 bits (174), Expect(4) = 2e-033
Identities = 38/74 (51%), Positives = 45/74 (60%)
Frame = -1 / -2
Query: 1107 SPIIHEPTDISSCA*LCSDALFMLM*RAKFFERINKEPEACRKYVFESPNFHHSGSYHCW 928
+P IH+PTD SSCA + ALF+ M A + P+A RKY F SPNFH SGSYH W
Sbjct: 630 NPNIHDPTDTSSCAYVWRIALFIEMNCATARDTTYISPDA*RKYDFPSPNFHDSGSYHLW 451
Query: 927 PSSLMTIPDFIQPM 886
T PDF+ PM
Sbjct: 450 LGLEKTSPDFMHPM 409
Score = 65.7 bits (137), Expect(4) = 2e-033
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = -1 / -2
Query: 711 RIKKSFVCRFSSSILRSKLSPRFALRPITKRIATPFSSSFF 589
RIKKSFVCRFSSSI S +SP FALRP TKR+ P SSS F
Sbjct: 234 RIKKSFVCRFSSSIALS*ISPLFALRPRTKRMMIPLSSSSF 112
Score = 51.9 bits (107), Expect(3) = 2e-080
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +2 / +2
Query: 491 QQLLAVIGVYTGFGSRLKRNVFRGSWMPRGDALKKLEE 604
++L+AVIG+ T FG R R+ R SWMP G L+KLEE
Sbjct: 11 RRLMAVIGIMTEFGHRSNRDSIRKSWMPTGTKLRKLEE 124
Score = 35.0 bits (70), Expect(3) = 2e-080
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2 / +3
Query: 1100 MGLNATYVDDDRLCCSSSRQEKICS 1174
+GL+ ++D+ +LCCS S Q IC+
Sbjct: 624 LGLSVKHIDESQLCCSKSSQGGICA 698
Score = 25.8 bits (50), Expect(4) = 2e-033
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1 / -2
Query: 603 SSSFFRASPLGIQEPRKTFLLRREPNPV*TPMTA 502
SSSF P+GI + LL PN V P+TA
Sbjct: 123 SSSFLNFVPVGIHDFLIESLLDL*PNSVMIPITA 22
Score = 24.9 bits (48), Expect(4) = 2e-033
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3 / -1
Query: 823 NVIFNFDIKFCIPGFNCSTE 764
N+I N DI+ IPG + E
Sbjct: 346 NIILNLDIEVSIPGISSIAE 287
>gb|BX251726.1|BX251726 BX251726 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP054E04, mRNA sequence
Length = 573
Score = 223 bits (482), Expect(3) = 3e-065
Identities = 87/154 (56%), Positives = 118/154 (76%)
Frame = +2 / +3
Query: 599 EEKGVAIRFVIGRSANRGDSLDRNIDDENRQTKDFLILESHEEAAEELPSKAKIFFSAAV 778
E+KG+ IRFV+GRSANRGD D+ IDDENRQTKDF ILE+H E++E+L K+K++FS A
Sbjct: 72 EDKGIIIRFVLGRSANRGDIYDKAIDDENRQTKDFFILENHVESSEDLSKKSKLYFSNAA 251
Query: 779 EAWDAEFYVKVEDNINLDLAGLIEMLEGRRGSQGLYMGCMKSGMVISEEGQQWYEPEWWK 958
+ WDA+FYVKV+DN+ +++ L ML Y+GCMKSG V S +WYEPE WK
Sbjct: 252 DTWDADFYVKVQDNVFVNIDKLGAMLATHWDKPRAYIGCMKSGEVFSNPSHKWYEPESWK 431
Query: 959 FGDSKTYFRHASGSLFILSKNLARYININSASLQ 1060
FGD K+YFRHASG ++++S+ +A++I+IN+A LQ
Sbjct: 432 FGDGKSYFRHASGEMYVVSRAVAQFISINNAILQ 533
Score = 65.7 bits (137), Expect(4) = 3e-027
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = -1 / -3
Query: 711 RIKKSFVCRFSSSILRSKLSPRFALRPITKRIATPFSSSFF 589
RIKKSFVCRFSSSI S +SP FALRP TKR+ P SSS F
Sbjct: 184 RIKKSFVCRFSSSIALS*ISPLFALRPRTKRMMIPLSSSSF 62
Score = 60.6 bits (126), Expect(4) = 3e-027
Identities = 28/55 (50%), Positives = 32/55 (58%)
Frame = -1 / -3
Query: 1050 ALFMLM*RAKFFERINKEPEACRKYVFESPNFHHSGSYHCWPSSLMTIPDFIQPM 886
ALF+ M A + P+A RKY F SPNFH SGSYH W T PDF+ PM
Sbjct: 523 ALFIEMNCATARDTTYISPDA*RKYDFPSPNFHDSGSYHLWLGLEKTSPDFMHPM 359
Score = 32.7 bits (65), Expect(3) = 3e-065
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +2 / +2
Query: 1061 SYAHDDISVGSWM 1099
+YAH+D+SVGSWM
Sbjct: 533 TYAHEDVSVGSWM 571
Score = 32.7 bits (65), Expect(3) = 3e-065
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2 / +3
Query: 536 RLKRNVFRGSWMPRGDALKKLEE 604
R R+ R SWMP G L+KLEE
Sbjct: 6 RSNRDSIRKSWMPTGTKLRKLEE 74
Score = 26.7 bits (52), Expect(4) = 3e-027
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / -1
Query: 1098 IHEPTDISSCA 1066
IH+PTD SSCA
Sbjct: 570 IHDPTDTSSCA 538
Score = 24.9 bits (48), Expect(4) = 3e-027
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3 / -2
Query: 823 NVIFNFDIKFCIPGFNCSTE 764
N+I N DI+ IPG + E
Sbjct: 296 NIILNLDIEVSIPGISSIAE 237
>gb|CO366212.1|CO366212 RTK1_26_B12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_26_B12_A029 5', mRNA sequence
Length = 870
Score = 101 bits (216), Expect(3) = 5e-047
Identities = 37/83 (44%), Positives = 58/83 (69%)
Frame = +2 / +3
Query: 719 HEEAAEELPSKAKIFFSAAVEAWDAEFYVKVEDNINLDLAGLIEMLEGRRGSQGLYMGCM 898
H E EL +K KI+F+ A WDA+FY+KV+D+++++L L + L R +Y GCM
Sbjct: 120 HVEGYLELSAKTKIYFATAYAKWDADFYIKVDDDVHVNLGTLAKNLARHRSKPRVYTGCM 299
Query: 899 KSGMVISEEGQQWYEPEWWKFGD 967
KSG V++ +G +++EPE+WKFG+
Sbjct: 300 KSGPVLANKGVRYHEPEYWKFGE 368
Score = 83.1 bits (175), Expect(3) = 5e-047
Identities = 28/58 (48%), Positives = 44/58 (75%)
Frame = +2 / +3
Query: 977 YFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATYVDDDRLCCSS 1150
YFRHA+G L+ +SK+LA Y++ N L YA++D+S+GSW +GL+ ++DD R+CC +
Sbjct: 381 YFRHATGQLYAISKDLAYYVSQNLDILHRYANEDVSIGSWFIGLDVKHIDDRRMCCGT 554
Score = 42.8 bits (87), Expect(3) = 5e-047
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2 / +3
Query: 605 KGVAIRFVIGRSANRGDSLDRNIDDENRQTKDFLILESHE 724
+G+ +RFVIG SA G LDR I+ E+ Q DF+ L+ E
Sbjct: 9 EGIIVRFVIGHSATAGGILDRAIEAEDIQHHDFMRLDHVE 128
>gb|CV032296.1|CV032296 RTNACL1_7_E02.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_7_E02_A029 3', mRNA sequence
Length = 564
Score = 105 bits (224), Expect(2) = 3e-041
Identities = 39/83 (46%), Positives = 59/83 (71%)
Frame = +2 / -3
Query: 719 HEEAAEELPSKAKIFFSAAVEAWDAEFYVKVEDNINLDLAGLIEMLEGRRGSQGLYMGCM 898
H E EL +K K +FS AV WDA+FYVKV+D+++++L L L R +Y+GCM
Sbjct: 559 HVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLARYRSKPRIYIGCM 380
Query: 899 KSGMVISEEGQQWYEPEWWKFGD 967
KSG V++++G +++EPE+WKFG+
Sbjct: 379 KSGPVLAQKGVKYHEPEYWKFGE 311
Score = 84.5 bits (178), Expect(2) = 3e-041
Identities = 28/62 (45%), Positives = 46/62 (74%)
Frame = +2 / -3
Query: 965 DSKTYFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATYVDDDRLCC 1144
+ YFRHA+G ++ +SK+LA YI+INS L YA++D+S+GSW +GL+ ++D+ +CC
Sbjct: 310 EGNRYFRHATGQIYAISKDLATYISINSQILHRYANEDVSLGSWFIGLDVEHIDERSMCC 131
Query: 1145 SS 1150
+
Sbjct: 130 GT 125
>gb|DR072340.1|DR072340 RTDK1_25_D07.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_25_D07_A029 5', mRNA sequence
Length = 626
Score = 108 bits (230), Expect(3) = 4e-040
Identities = 40/83 (48%), Positives = 59/83 (71%)
Frame = +2 / +2
Query: 719 HEEAAEELPSKAKIFFSAAVEAWDAEFYVKVEDNINLDLAGLIEMLEGRRGSQGLYMGCM 898
H E EL +K KI+F+ AV WDA+FY+KV+D+++++LA L L R +Y+GCM
Sbjct: 371 HVEGYHELSAKTKIYFTTAVSKWDADFYIKVDDDVHVNLATLGATLAAHRSKPRVYIGCM 550
Query: 899 KSGMVISEEGQQWYEPEWWKFGD 967
KSG V+S+ G ++ EPE+WKFG+
Sbjct: 551 KSGPVLSQRGVRYQEPEYWKFGE 619
Score = 48.7 bits (100), Expect(3) = 4e-040
Identities = 22/42 (52%), Positives = 27/42 (64%)
Frame = +2 / +2
Query: 599 EEKGVAIRFVIGRSANRGDSLDRNIDDENRQTKDFLILESHE 724
EEKG+ +RFVIG S G LDR I+ E+ Q DF+ LE E
Sbjct: 254 EEKGIIVRFVIGHSVTSGGILDRAINAEDAQHGDFMRLEHVE 379
Score = 47.3 bits (97), Expect(3) = 4e-040
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +2 / +2
Query: 488 KQQLLAVIGVYTGFGSRLKRNVFRGSWMPRGDALKKLEEK 607
+ ++ VIG+ T F SR +R+ R +WMPRG+ K++EE+
Sbjct: 140 RPKVFMVIGINTAFSSRKRRDSVRETWMPRGEKRKRMEEE 259
>gb|DR088809.1|DR088809 RTAL1_4_E08.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_4_E08_A029 5', mRNA sequence
Length = 708
Score = 101 bits (216), Expect(2) = 1e-039
Identities = 37/83 (44%), Positives = 58/83 (69%)
Frame = +2 / +2
Query: 719 HEEAAEELPSKAKIFFSAAVEAWDAEFYVKVEDNINLDLAGLIEMLEGRRGSQGLYMGCM 898
H E EL +K KI+F+ A WDA+FY+KV+D+++++L L + L R +Y GCM
Sbjct: 44 HVEGYLELSAKTKIYFATAYAKWDADFYIKVDDDVHVNLGTLAKNLARHRSKPRVYTGCM 223
Query: 899 KSGMVISEEGQQWYEPEWWKFGD 967
KSG V++ +G +++EPE+WKFG+
Sbjct: 224 KSGPVLANKGVRYHEPEYWKFGE 292
Score = 83.1 bits (175), Expect(2) = 1e-039
Identities = 28/58 (48%), Positives = 44/58 (75%)
Frame = +2 / +2
Query: 977 YFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATYVDDDRLCCSS 1150
YFRHA+G L+ +SK+LA Y++ N L YA++D+S+GSW +GL+ ++DD R+CC +
Sbjct: 305 YFRHATGQLYAISKDLAYYVSQNLDILHRYANEDVSIGSWFIGLDVKHIDDRRMCCGT 478
>gb|CX648085.1|CX648085 COLD1_26_A01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_26_A01_A029 5', mRNA sequence
Length = 877
Score = 94.5 bits (200), Expect(2) = 2e-038
Identities = 35/73 (47%), Positives = 52/73 (71%)
Frame = +2 / +1
Query: 749 KAKIFFSAAVEAWDAEFYVKVEDNINLDLAGLIEMLEGRRGSQGLYMGCMKSGMVISEEG 928
K KI+F+ AV WDA+FYVKV+D+++++L L L R +Y+GCMKSG V++E
Sbjct: 10 KTKIYFATAVAKWDADFYVKVDDDVHVNLGALATTLARHRVKPRVYIGCMKSGPVLAERD 189
Query: 929 QQWYEPEWWKFGD 967
+++EPE WKFG+
Sbjct: 190 VKYHEPEHWKFGE 228
Score = 86.3 bits (182), Expect(2) = 2e-038
Identities = 29/58 (50%), Positives = 44/58 (75%)
Frame = +2 / +1
Query: 977 YFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATYVDDDRLCCSS 1150
YFRHA+G ++ +SK+LARYI+IN L YA++D+S+GSW +GL ++DD +CC +
Sbjct: 241 YFRHATGQIYAISKDLARYISINLPILHKYANEDVSLGSWFIGLEVEHIDDRNMCCGT 414
>gb|CO162958.1|CO162958 FLD1_38_C05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_C05_A029 5', mRNA sequence
Length = 625
Score = 143 bits (307), Expect = 3e-033
Identities = 51/78 (65%), Positives = 67/78 (85%)
Frame = +2 / +1
Query: 941 EPEWWKFGDSKTYFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATY 1120
EP WWKFGD K+YFRHA+ L++LS++LA+YININSASL +YAH+DISVGSWMMGL+A Y
Sbjct: 1 EPNWWKFGDEKSYFRHAAAPLYVLSRDLAQYININSASLNTYAHEDISVGSWMMGLDAEY 180
Query: 1121 VDDDRLCCSSSRQEKICS 1174
+D+ CCS+ +++ICS
Sbjct: 181 IDERHYCCSTMVEDEICS 234
>gb|DR097074.1|DR097074 STRR1_32_G06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_32_G06_A033 3', mRNA sequence
Length = 835
Score = 140 bits (300), Expect = 2e-032
Identities = 48/86 (55%), Positives = 70/86 (81%)
Frame = +2 / +2
Query: 917 SEEGQQWYEPEWWKFGDSKTYFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSW 1096
S +WYEPE WKFGD K+YFRHASG ++++S+ +A++I+IN+A LQ+YAH+D+SVGSW
Sbjct: 5 SNPSHKWYEPESWKFGDGKSYFRHASGEMYVVSRAVAQFISINNAILQTYAHEDVSVGSW 184
Query: 1097 MMGLNATYVDDDRLCCSSSRQEKICS 1174
M+GL+ ++D+ +LCCS S Q IC+
Sbjct: 185 MLGLSVKHIDESQLCCSKSSQGGICA 262
>gb|BF518128.1|BF518128 NXSI_035_D01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_D01 5' similar to Arabidopsis thaliana
sequence At5g53340 Avr9 elicitor response protein-like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 283
Score = 134 bits (288), Expect = 1e-030
Identities = 46/86 (53%), Positives = 67/86 (77%)
Frame = +2 / +3
Query: 917 SEEGQQWYEPEWWKFGDSKTYFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSW 1096
S +WYEPE WKFGD K+YFRHASG ++++S+ +A++I+IN+A LQ YAH+D+SVG W
Sbjct: 6 SNPSHKWYEPESWKFGDGKSYFRHASGEMYVVSRAVAQFISINNAILQIYAHEDVSVGXW 185
Query: 1097 MMGLNATYVDDDRLCCSSSRQEKICS 1174
M+GL+ ++D+ +LCCS S Q C+
Sbjct: 186 MLGLSVKHIDESQLCCSKSSQGGXCA 263
>gb|DR023658.1|DR023658 STRS1_59_E01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_59_E01_A034 3', mRNA sequence
Length = 802
Score = 90.0 bits (190), Expect(2) = 2e-029
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +2 / -2
Query: 965 DSKTYFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATYVDDDRLCC 1144
D YFRHA+G L+ +SK+LA YI+IN L YA++D+S+GSW +GL+ ++DD RLCC
Sbjct: 648 DGNKYFRHATGQLYGISKDLATYISINEKILHKYANEDVSLGSWFIGLDVEHIDDRRLCC 469
Query: 1145 SS 1150
+
Sbjct: 468 GT 463
Score = 60.2 bits (125), Expect(2) = 2e-029
Identities = 22/50 (44%), Positives = 35/50 (70%)
Frame = +2 / -2
Query: 818 NINLDLAGLIEMLEGRRGSQGLYMGCMKSGMVISEEGQQWYEPEWWKFGD 967
+++++LA L L R +Y+GCMKSG V+S+ G ++ EPE+WKFG+
Sbjct: 798 DVHVNLATLGATLAAHRSKPRVYIGCMKSGPVLSQRGVRYQEPEYWKFGE 649
>gb|DR013142.1|DR013142 HEAT1_17_F10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_F10_A029 3', mRNA sequence
Length = 849
Score = 84.5 bits (178), Expect(2) = 8e-029
Identities = 28/62 (45%), Positives = 46/62 (74%)
Frame = +2 / +1
Query: 965 DSKTYFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATYVDDDRLCC 1144
+ YFRHA+G ++ +SK+LA YI+INS L YA++D+S+GSW +GL+ ++D+ +CC
Sbjct: 160 EGNRYFRHATGQIYAISKDLATYISINSQILHRYANEDVSLGSWFIGLDVEHIDERSMCC 339
Query: 1145 SS 1150
+
Sbjct: 340 GT 345
Score = 63.8 bits (133), Expect(2) = 8e-029
Identities = 22/53 (41%), Positives = 39/53 (73%)
Frame = +2 / +1
Query: 809 VEDNINLDLAGLIEMLEGRRGSQGLYMGCMKSGMVISEEGQQWYEPEWWKFGD 967
V+D+++++L L L R +Y+GCMKSG V++++G +++EPE+WKFG+
Sbjct: 1 VDDDVHVNLGMLATTLARYRSKPRIYIGCMKSGPVLAQKGVKYHEPEYWKFGE 159
>gb|CD027928.1|CD027928 NXNV_069_A02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_069_A02 5' similar to Arabidopsis thaliana sequence
At5g53340 Avr9 elicitor response protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 266
Score = 127 bits (271), Expect = 2e-028
Identities = 46/87 (52%), Positives = 66/87 (75%)
Frame = +2 / +1
Query: 899 KSGMVISEEGQQWYEPEWWKFGDSKTYFRHASGSLFILSKNLARYININSASLQSYAHDD 1078
KSG V S + EPE WKFGD K+YFRHASG ++++S+ +A++I+IN+A LQ+Y H+D
Sbjct: 1 KSGEVFSNPSHKXXEPESWKFGDGKSYFRHASGEMYVVSRAVAQFISINNAILQTYXHED 180
Query: 1079 ISVGSWMMGLNATYVDDDRLCCSSSRQ 1159
+SVGSWM+GL A ++D+ +L CS Q
Sbjct: 181 VSVGSWMLGLTAXHIDESQLXCSKXXQ 261
>gb|DR693981.1|DR693981 EST1084071 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE664 3' end, mRNA sequence
Length = 817
Score = 77.6 bits (163), Expect(4) = 4e-028
Identities = 36/86 (41%), Positives = 47/86 (54%)
Frame = +2 / +3
Query: 722 EEAAEELPSKAKIFFSAAVEAWDAEFYVKVEDNINLDLAGLIEMLEGRRGSQGLYMGCMK 901
EE +LP K FF AA +DA+FYVK +D+I L L +L R S Y+GCMK
Sbjct: 279 EEEYHKLPYKTLSFFKAAYALFDADFYVKADDDIYLRPDRLATLLAKERPSPRTYIGCMK 458
Query: 902 SGMVISEEGQQWYEPEWWKFGDSKTY 979
G VI++ +WYEP + G Y
Sbjct: 459 KGPVITDPKLKWYEPAAYLLGSEYFY 536
Score = 46.0 bits (94), Expect(4) = 4e-028
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +2 / +3
Query: 458 NRTAAVDSDKKQQLLAVIGVYTGFGSRLKRNVFRGSWMP 574
++TA ++S + ++L V+G+ TGFGS +R R +W+P
Sbjct: 18 HQTAGLESQDRPKVLGVVGIQTGFGSSQRRKALRETWLP 134
Score = 35.4 bits (71), Expect(4) = 4e-028
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = +2 / +3
Query: 1052 SLQSYAHDDISVGSWMMGLNATYVDDDRLCCSSSRQEKI 1168
S + +++D+++G+WM+ +N + D+ LC + + I
Sbjct: 606 SFRMLSNEDVTIGAWMLAMNVEHEDNRELCHPHCKPDSI 722
Score = 22.1 bits (42), Expect(4) = 4e-028
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2 / +3
Query: 608 GVAIRFVIGRS 640
G+A RFVIGR+
Sbjct: 174 GLAFRFVIGRT 206
>gb|BE049650.1|BE049650 NXNV_069_A03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_069_A03 5' similar to Arabidopsis thaliana sequence
At5g53340 Avr9 elicitor response protein-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 219
Score = 118 bits (252), Expect = 1e-025
Identities = 42/69 (60%), Positives = 57/69 (82%)
Frame = +2 / +1
Query: 899 KSGMVISEEGQQWYEPEWWKFGDSKTYFRHASGSLFILSKNLARYININSASLQSYAHDD 1078
KSG V S +WYEPE WKFGD K+YFRHASG ++++S+ +A++I+IN+A LQ+YAH+D
Sbjct: 1 KSGEVFSNPSHKWYEPESWKFGDGKSYFRHASGEMYVVSRAVAQFISINNAILQTYAHED 180
Query: 1079 ISVGSWMMG 1105
+SVGSWM G
Sbjct: 181 VSVGSWMXG 207
>gb|DR025055.1|DR025055 STRS1_69_G04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_G04_A034 3', mRNA sequence
Length = 845
Score = 86.3 bits (182), Expect(2) = 3e-025
Identities = 29/58 (50%), Positives = 44/58 (75%)
Frame = +2 / -2
Query: 977 YFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATYVDDDRLCCSS 1150
YFRHA+G ++ +SK+LARYI+IN L YA++D+S+GSW +GL ++DD +CC +
Sbjct: 697 YFRHATGQIYAISKDLARYISINLPILHKYANEDVSLGSWFIGLEVEHIDDRNMCCGT 524
Score = 50.1 bits (103), Expect(2) = 3e-025
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2 / -2
Query: 833 LAGLIEMLEGRRGSQGLYMGCMKSGMVISEEGQQWYEPEWWKFGD 967
L L L R +Y+GCMKSG V++E ++++PE WKFG+
Sbjct: 844 LGALATTLARHRVKPRVYIGCMKSGPVLAERDVKYHDPEHWKFGE 710
>gb|DR097148.1|DR097148 STRR1_32_G06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_32_G06_A033 5', mRNA sequence
Length = 759
Score = 116 bits (248), Expect = 4e-025
Identities = 40/72 (55%), Positives = 61/72 (84%)
Frame = +2 / +1
Query: 959 FGDSKTYFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATYVDDDRL 1138
FGD K+YFRHASG ++++S+ +A++I+IN+A LQ+YAH+D+SVGSWM+GL+ ++D+ +L
Sbjct: 1 FGDGKSYFRHASGEMYVVSRAVAQFISINNAILQTYAHEDVSVGSWMLGLSVKHIDESQL 180
Query: 1139 CCSSSRQEKICS 1174
CCS S Q IC+
Sbjct: 181 CCSKSSQGGICA 216
>gb|DR015884.1|DR015884 STRS1_6_F12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_6_F12_A034 3', mRNA sequence
Length = 890
Score = 86.3 bits (182), Expect(2) = 3e-024
Identities = 29/58 (50%), Positives = 44/58 (75%)
Frame = +2 / +3
Query: 977 YFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMGLNATYVDDDRLCCSS 1150
YFRHA+G ++ +SK+LARYI+IN L YA++D+S+GSW +GL ++DD +CC +
Sbjct: 120 YFRHATGQIYAISKDLARYISINLPILHKYANEDVSLGSWFIGLEVEHIDDRNMCCGT 293
Score = 46.4 bits (95), Expect(2) = 3e-024
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +2 / +3
Query: 881 LYMGCMKSGMVISEEGQQWYEPEWWKFGD 967
+Y+GCMKSG V++ +++EPE WKFG+
Sbjct: 21 VYIGCMKSGPVLAXRDVKYHEPEHWKFGE 107
>gb|DR102041.1|DR102041 STRR1_77_E05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_77_E05_A033 5', mRNA sequence
Length = 301
Score = 68.4 bits (143), Expect(2) = 5e-021
Identities = 24/47 (51%), Positives = 36/47 (76%)
Frame = +2 / +2
Query: 965 DSKTYFRHASGSLFILSKNLARYININSASLQSYAHDDISVGSWMMG 1105
+ YFRHA+G ++ +SK+LA YI+INS L YA++D+S+GSW +G
Sbjct: 161 EGNRYFRHATGQIYAISKDLATYISINSQILHRYANEDVSLGSWFIG 301
Score = 53.8 bits (111), Expect(2) = 5e-021
Identities = 16/29 (55%), Positives = 27/29 (93%)
Frame = +2 / +2
Query: 881 LYMGCMKSGMVISEEGQQWYEPEWWKFGD 967
+Y+GCMKSG V++++G +++EPE+WKFG+
Sbjct: 74 IYIGCMKSGPVLAQKGVKYHEPEYWKFGE 160
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 688,656,981
Number of Sequences: 355925
Number of extensions: 10639671
Number of successful extensions: 126191
Number of sequences better than 1.0e-020: 25
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 21548346975
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)