TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.2
(710 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed... 249 1e-067
gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library P... 245 3e-064
gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch... 205 2e-052
gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pin... 203 1e-051
gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus adde... 201 4e-051
gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clon... 176 2e-043
gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clon... 169 2e-041
gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pin... 163 1e-039
gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus ni... 158 5e-038
gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pin... 157 9e-038
gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magn... 142 2e-033
gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magn... 142 2e-033
gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compr... 141 4e-033
gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pin... 137 7e-032
gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus adde... 128 3e-029
gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus adde... 127 8e-029
gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side ... 119 2e-026
gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed... 117 6e-026
gb|AW011545.1|AW011545 ST22A12 Pine TriplEx shoot tip libra... 116 1e-025
gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pin... 107 2e-024
gb|BF049746.1|BF049746 NXCI_106_F09_F NXCI (Nsf Xylem Compr... 107 7e-023
gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pin... 107 9e-023
gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus ni... 107 9e-023
>gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_G03_A022 5', mRNA sequence
Length = 773
Score = 249 bits (538), Expect(2) = 1e-067
Identities = 103/171 (60%), Positives = 134/171 (78%)
Frame = +3 / +2
Query: 54 ITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFITFTAIVVI 233
IT DN+SVLVY SW VI ++L V+KTV++GR++FSA++QL+FRL+KGL+FI F ++++I
Sbjct: 134 ITHDNKSVLVYGLSWFVIAIVLGVLKTVAMGRQKFSADYQLMFRLLKGLLFIGFISVLII 313
Query: 234 LIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLL 413
LI + G+TV D+F C LAFMPTGW L A RP+ ++TG S+++LARGYE +MGLL
Sbjct: 314 LIVVCGLTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLL 493
Query: 414 LFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE* 566
LFTP+A LA FVSEFQTR+LFNQAFS GLQISRI G KKD + + E*
Sbjct: 494 LFTPVAILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE* 646
Score = 81.3 bits (171), Expect(2) = 4e-027
Identities = 44/106 (41%), Positives = 55/106 (51%)
Frame = -2 / -3
Query: 367 EPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLI 188
+ ++PV G A I K HPVGM AR N S+TV P +RI + +N P
Sbjct: 447 DSKNPVRLYRGLHACAICSKAHPVGMNARKHANKSATVKPQTTMRIMRTEMKPMNRSPFR 268
Query: 187 NRNTSWNSALNLLLPTDTVFITSKITKITTHEKQ*TSTLWLSLVIF 50
+RN S SALN LP TVF T K +T + T TL LS V+F
Sbjct: 267 SRNMS**SALNFCLPIATVFNTPKTIAMTNQDSPYTRTLLLSCVMF 130
Score = 60.2 bits (125), Expect(2) = 4e-027
Identities = 28/49 (57%), Positives = 29/49 (59%)
Frame = -2 / -3
Query: 565 YSLFXVXXSFLCPXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMGV 419
YS+ SF P IREIC PLL A L S VWNSDTN QA A GV
Sbjct: 645 YSVLVEDQSFFLPARIREICSPLLKA*LKSKRVWNSDTNGNQANIATGV 499
Score = 27.6 bits (54), Expect(2) = 1e-067
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3 / +2
Query: 15 RYGLVYHLNIT 47
+YG+VYHLNIT
Sbjct: 107 QYGIVYHLNIT 139
>gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 675
Score = 245 bits (529), Expect = 3e-064
Identities = 102/167 (61%), Positives = 126/167 (75%)
Frame = +3 / +1
Query: 30 YHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFI 209
Y L IT ++SVLVY SW+VI V+L V+K VS+GRRRFSA+FQLVFRL+KGL+FI
Sbjct: 172 YGLVYHLNITGTHKSVLVYGLSWLVIVVVLTVLKIVSMGRRRFSADFQLVFRLLKGLLFI 351
Query: 210 TFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARG 389
F A++++L + MTV D+F CILAFMPTGW + +P +H+ G WGS++ALARG
Sbjct: 352 GFIAVLIVLYLVLHMTVRDLFACILAFMPTGWAILQIAQTCKPFVHRIGFWGSVRALARG 531
Query: 390 YEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXG 530
YE +MGLLLF P+A LA FVSEFQTR+LFNQAFS GLQISRI G
Sbjct: 532 YEFIMGLLLFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQISRILAG 672
Score = 96.8 bits (205), Expect(2) = 7e-029
Identities = 51/106 (48%), Positives = 61/106 (57%)
Frame = -2 / -2
Query: 367 EPQSPVLWITGRIAXXIXXKPHPVGMKARMQTNMSSTVMPGIAIRITTMAVNVINIRPLI 188
EPQ+P+ G I HPVGM AR+ N S TVM R A+N I RPL
Sbjct: 509 EPQNPMRCTKGLQVCAICNMAHPVGMNARIHANKSLTVMCKTR*RTIRTAMNPIKRRPLR 330
Query: 187 NRNTSWNSALNLLLPTDTVFITSKITKITTHEKQ*TSTLWLSLVIF 50
+RNTS SALNLLLP +T+F T K T +T+H+ TSTL VIF
Sbjct: 329 SRNTS*KSALNLLLPIETIFNTVKTTTMTSHDSPYTSTLLCVPVIF 192
Score = 50.6 bits (104), Expect(2) = 7e-029
Identities = 22/36 (61%), Positives = 23/36 (63%)
Frame = -2 / -2
Query: 529 PXXIREICRPLLNAWLNSILVWNSDTNXXQARKAMG 422
P IREIC+PLL A L S VWNSDT QA A G
Sbjct: 671 PARIREICKPLLKA*LKSKRVWNSDTKGNQANTATG 564
>gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_39_G06_A034 5', mRNA sequence
Length = 683
Score = 205 bits (443), Expect = 2e-052
Identities = 84/140 (60%), Positives = 109/140 (77%)
Frame = +3 / -2
Query: 147 RRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXX 326
R++FSA++QL+FRL+KGL+FI F ++++ILI + G+TV D+F C LAFMPTGW L
Sbjct: 682 RQKFSADYQLMFRLLKGLLFIGFISVLIILIVVCGLTVADLFACFLAFMPTGWALLQIAQ 503
Query: 327 AIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGL 506
A RP+ ++TG S+++LARGYE +MGLLLFTP+A LA FVSEFQTR+LFNQAFS GL
Sbjct: 502 ACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVAILAWFPFVSEFQTRLLFNQAFSRGL 323
Query: 507 QISRIXXGHKKDXXTXNKE* 566
QISRI G KKD + + E*
Sbjct: 322 QISRILAGRKKDWSSTSTE* 263
>gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 3', mRNA sequence
Length = 769
Score = 203 bits (438), Expect = 1e-051
Identities = 81/133 (60%), Positives = 102/133 (76%)
Frame = +3 / +1
Query: 138 SVGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXX 317
S+GRRRFSA+FQL+FRL+KGL+FI F +++ ILI + G+T+ D+F C LAFMPTGW
Sbjct: 1 SMGRRRFSADFQLMFRLLKGLLFIGFLSVLTILIVVCGLTISDLFACFLAFMPTGWAFLQ 180
Query: 318 XXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFS 497
A RP++ + G W S++ALAR Y+ +MGL+LFTP+A LA FVSEFQTR LFNQAFS
Sbjct: 181 IALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFPFVSEFQTRFLFNQAFS 360
Query: 498 XGLQISRIXXGHK 536
GLQISRI G K
Sbjct: 361 RGLQISRILAGRK 399
>gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 5', mRNA sequence
Length = 804
Score = 201 bits (434), Expect = 4e-051
Identities = 80/132 (60%), Positives = 101/132 (76%)
Frame = +3 / +1
Query: 141 VGRRRFSAEFQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXX 320
+GRRRFSA+FQL+FRL+KGL+FI F +++ ILI + G+T+ D+F C LAFMPTGW
Sbjct: 1 MGRRRFSADFQLMFRLLKGLLFIGFLSVLTILIVVCGLTISDLFACFLAFMPTGWAFLQI 180
Query: 321 XXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSX 500
A RP++ + G W S++ALAR Y+ +MGL+LFTP+A LA FVSEFQTR LFNQAFS
Sbjct: 181 ALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFPFVSEFQTRFLFNQAFSR 360
Query: 501 GLQISRIXXGHK 536
GLQISRI G K
Sbjct: 361 GLQISRILAGRK 396
>gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clone RS15C01, mRNA sequence
Length = 488
Score = 176 bits (378), Expect = 2e-043
Identities = 71/123 (57%), Positives = 88/123 (71%)
Frame = +3 / +2
Query: 168 FQLVFRLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIH 347
F RL+KGL+FI F ++++ILI + G+T+ D+F C LAFMPTGW A RP++
Sbjct: 2 FSAHVRLLKGLLFIGFLSVLIILIVVCGLTISDLFACFLAFMPTGWAFLQIALACRPLLQ 181
Query: 348 KTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXX 527
G W S++ALAR Y+ +MGLLLFTP+A LA FVSEFQTR LFNQAFS GLQISRI
Sbjct: 182 HAGFWDSVRALARSYDYVMGLLLFTPVAILAWFPFVSEFQTRFLFNQAFSRGLQISRILA 361
Query: 528 GHK 536
G K
Sbjct: 362 GRK 370
>gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clone RS11G06, mRNA sequence
Length = 551
Score = 169 bits (364), Expect = 2e-041
Identities = 68/118 (57%), Positives = 85/118 (72%)
Frame = +3 / +3
Query: 183 RLIKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLW 362
RL+KGL+FI F ++++ILI + G+T+ D+F C LAFMPTGW A RP++ G W
Sbjct: 9 RLLKGLLFIGFLSVLIILIVVCGLTISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFW 188
Query: 363 GSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHK 536
S++ALAR Y+ +MGLLLFTP+A LA FVSEFQTR LFNQAFS GL SRI G K
Sbjct: 189 DSVRALARSYDYVMGLLLFTPVAILAWFPFVSEFQTRFLFNQAFSRGLXNSRILAGRK 362
>gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 5', mRNA sequence
Length = 501
Score = 163 bits (350), Expect = 1e-039
Identities = 67/114 (58%), Positives = 83/114 (72%)
Frame = +3 / +2
Query: 201 IFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKAL 380
+FI F ++++ILI + G+T+ D+FVC LAFMPTGW A RP+ GLW S++AL
Sbjct: 2 LFIGFLSVLIILIVVFGLTIADLFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRAL 181
Query: 381 ARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKD 542
AR YE +MGL LFTP+A LA FVSEFQ+R+LFNQAFS GLQISRI G K D
Sbjct: 182 ARSYEYVMGLHLFTPVAILAWFPFVSEFQSRLLFNQAFSRGLQISRILTGRK*D 343
>gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_28_H03_A029 3', mRNA sequence
Length = 692
Score = 158 bits (339), Expect = 5e-038
Identities = 66/106 (62%), Positives = 79/106 (74%)
Frame = +3 / +2
Query: 249 GMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 428
G+TV D+F C LAFMPTGW L A RP+ ++TG S+++LARGYE +MGLLLFTP+
Sbjct: 2 GLTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPV 181
Query: 429 AFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE* 566
A LA FVSEFQTR+LFNQAFS GLQISRI G KKD + + E*
Sbjct: 182 AILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE* 319
>gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 3', mRNA sequence
Length = 820
Score = 157 bits (337), Expect = 9e-038
Identities = 65/110 (59%), Positives = 80/110 (72%)
Frame = +3 / +3
Query: 213 FTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGY 392
F ++++ILI + G+T+ D+FVC LAFMPTGW A RP+ GLW S++ALAR Y
Sbjct: 6 F*SVLIILIVVFGLTIADLFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSY 185
Query: 393 EILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHKKD 542
E +MGL LFTP+A LA FVSEFQ+R+LFNQAFS GLQISRI G K D
Sbjct: 186 EYVMGLHLFTPVAILAWFPFVSEFQSRLLFNQAFSRGLQISRILTGRK*D 335
>gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 3', mRNA sequence
Length = 872
Score = 142 bits (305), Expect = 2e-033
Identities = 56/171 (32%), Positives = 100/171 (58%)
Frame = +3 / +2
Query: 24 LVYHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLI 203
L Y + +I +++S+LVY SW+ + V L + ++ +++A+ + +R + +
Sbjct: 98 LQYGIVYQLRIANNSKSILVYLLSWIYVVVALAIYLIITYAEDKYAAKRHIYYRSFQVSV 277
Query: 204 FITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALA 383
++++L+A+ + +D+ +LA MPTGWGL +RP++ T +W + A+A
Sbjct: 278 IGFILLVLIVLLAVTNLKFIDLITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVA 457
Query: 384 RGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHK 536
R YE++ G+++ P+A L+ QTR+LFN+AFS GLQISRI G K
Sbjct: 458 RLYEMIFGIIIMIPVALLSWLPGFQTLQTRILFNEAFSRGLQISRILVGKK 610
>gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 5', mRNA sequence
Length = 763
Score = 142 bits (305), Expect = 2e-033
Identities = 56/171 (32%), Positives = 100/171 (58%)
Frame = +3 / +3
Query: 24 LVYHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLI 203
L Y + +I +++S+LVY SW+ + V L + ++ +++A+ + +R + +
Sbjct: 231 LQYGIVYQLRIANNSKSILVYLLSWIYVVVALAIYLIITYAEDKYAAKRHIYYRSFQVSV 410
Query: 204 FITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALA 383
++++L+A+ + +D+ +LA MPTGWGL +RP++ T +W + A+A
Sbjct: 411 IGFILLVLIVLLAVTNLKFIDLITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVA 590
Query: 384 RGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHK 536
R YE++ G+++ P+A L+ QTR+LFN+AFS GLQISRI G K
Sbjct: 591 RLYEMIFGIIIMIPVALLSWLPGFQTLQTRILFNEAFSRGLQISRILVGKK 743
>gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_162_C02 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 381
Score = 141 bits (303), Expect = 4e-033
Identities = 59/95 (62%), Positives = 69/95 (72%)
Frame = +3 / +1
Query: 282 LAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSE 461
LAFMPTGW + + +H+ G WGS++ALARGYE +MGLLLF PIA LA FVSE
Sbjct: 1 LAFMPTGWAILQIAQTCKSFVHRIGFWGSVRALARGYEFIMGLLLFAPIAVLAWFPFVSE 180
Query: 462 FQTRMLFNQAFSXGLQISRIXXGHKKDXXTXNKE* 566
FQTR+LFNQ F GLQISRI G KKD + +KE*
Sbjct: 181 FQTRLLFNQXFXXGLQISRILAGRKKDWSSKSKE* 285
>gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 3', mRNA sequence
Length = 760
Score = 137 bits (294), Expect = 7e-032
Identities = 55/89 (61%), Positives = 64/89 (71%)
Frame = +3 / +1
Query: 270 FVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXX 449
F C LAFMPTGW A RP++ + G W S++ALAR Y+ +MGL+LFTP+A LA
Sbjct: 1 FACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFP 180
Query: 450 FVSEFQTRMLFNQAFSXGLQISRIXXGHK 536
FVSEFQTR LFNQAFS GLQISRI G K
Sbjct: 181 FVSEFQTRFLFNQAFSRGLQISRILAGRK 267
>gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 3', mRNA sequence
Length = 806
Score = 128 bits (275), Expect = 3e-029
Identities = 52/84 (61%), Positives = 61/84 (72%)
Frame = +3 / +1
Query: 285 AFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEF 464
AFMPTGW A RP++ + G W S++ALAR Y+ +MGL+LFTP+A LA FVSEF
Sbjct: 1 AFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFPFVSEF 180
Query: 465 QTRMLFNQAFSXGLQISRIXXGHK 536
QTR LFNQAFS GLQISRI G K
Sbjct: 181 QTRFLFNQAFSRGLQISRILAGRK 252
>gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_H10_A029 5', mRNA sequence
Length = 691
Score = 127 bits (272), Expect = 8e-029
Identities = 55/116 (47%), Positives = 74/116 (63%)
Frame = +3 / -2
Query: 189 IKGLIFITFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGS 368
I+G FI + + +A+ +TV D+F ILAF+PTGW + + V+ GLW S
Sbjct: 687 IQGATFIAVVTGLAVTVAVISLTVTDLFASILAFVPTGWLIICLAITWKSVVKSLGLWKS 508
Query: 369 IKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXXGHK 536
+ A+AR Y+ MG+LLF PI L+ FVS FQTR+LFNQAFS GL+IS I G+K
Sbjct: 507 VSAIARFYDAGMGILLFIPIVVLSWFPFVSTFQTRLLFNQAFSRGLEISLILAGNK 340
>gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_002_B01 5' similar to Arabidopsis thaliana
sequence At5g13000 callose synthase catalytic subunit
-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 447
Score = 119 bits (254), Expect = 2e-026
Identities = 50/73 (68%), Positives = 58/73 (79%)
Frame = +3 / +1
Query: 348 KTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQISRIXX 527
+ G WGS++ALARGYE +MGLLLF P+A LA FVSEFQTR+LFNQAFS GLQISRI
Sbjct: 1 RIGFWGSVRALARGYEFIMGLLLFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQISRILA 180
Query: 528 GHKKDXXTXNKE* 566
G KKD + +KE*
Sbjct: 181 GRKKDWSSKSKE* 219
>gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_B01_A021 3', mRNA sequence
Length = 559
Score = 117 bits (251), Expect = 6e-026
Identities = 46/91 (50%), Positives = 65/91 (71%)
Frame = +3 / +3
Query: 264 DIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAX 443
D+F ILAF+PTGWG+ A +P++ + GLW SI++L R Y+ MG+++F P+A +
Sbjct: 6 DVFASILAFIPTGWGILCLAIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVALCSW 185
Query: 444 XXFVSEFQTRMLFNQAFSXGLQISRIXXGHK 536
FVS FQTR++FNQAFS GL+IS I G+K
Sbjct: 186 LPFVSTFQTRLMFNQAFSRGLEISLILAGNK 278
>gb|AW011545.1|AW011545 ST22A12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST22A12, mRNA sequence
Length = 578
Score = 116 bits (249), Expect = 1e-025
Identities = 46/160 (28%), Positives = 90/160 (56%)
Frame = +3 / +3
Query: 30 YHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFI 209
Y + I+ ++S+ VY SW+ + V+L + + +++A+ + +R I+ L+
Sbjct: 36 YGIGYQLGISGGSKSIAVYLLSWIYVVVVLAIYMIILYAHDKYAAKQHIYYRAIQALVIS 215
Query: 210 TFTAIVVILIAIPGMTVLDIFVCILAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARG 389
+++L+ + + ++D+ +LAF+PTGWGL ++ +H +W ++ A+AR
Sbjct: 216 CTILAILLLLQLTELKLVDLVTSLLAFVPTGWGLILIAQVLKSFLHYNIVWETVIAVARL 395
Query: 390 YEILMGLLLFTPIAFLAXXXFVSEFQTRMLFNQAFSXGLQ 509
YEI G+++ P+A L+ QTR+LFN+AF GL+
Sbjct: 396 YEITFGIIVMIPMAVLSWLPGFQATQTRILFNEAFXKGLK 515
>gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 5', mRNA sequence
Length = 607
Score = 107 bits (228), Expect(2) = 2e-024
Identities = 44/77 (57%), Positives = 61/77 (79%)
Frame = +3 / +1
Query: 30 YHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFI 209
Y L I +++SVLVY SWVVI ++LLV+KTVS+GRRRFSA+FQL+FRL+KGL+FI
Sbjct: 340 YGLVYHLNIAHEHRSVLVYALSWVVIAIVLLVLKTVSMGRRRFSADFQLMFRLLKGLLFI 519
Query: 210 TFTAIVVILIAIPGMTV 260
F +++ ILI + G+T+
Sbjct: 520 GFLSVLTILIVVCGLTI 570
Score = 25.4 bits (49), Expect(2) = 2e-024
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +2
Query: 264 DIFVCILAFMP 296
D+F C LAFMP
Sbjct: 575 DLFACFLAFMP 607
>gb|BF049746.1|BF049746 NXCI_106_F09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_106_F09 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 213
Score = 107 bits (229), Expect = 7e-023
Identities = 42/71 (59%), Positives = 50/71 (70%)
Frame = +3 / +1
Query: 282 LAFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSE 461
LAFMPTGW + + +H+ G WGS++ALARGYE +MGLLLF P A LA FVSE
Sbjct: 1 LAFMPTGWAILQIAQTCKXFVHRIGFWGSVRALARGYEFIMGLLLFAPXAVLAWFPFVSE 180
Query: 462 FQTRMLFNQAF 494
FQTR+LFN F
Sbjct: 181 FQTRLLFNXXF 213
>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 5', mRNA sequence
Length = 796
Score = 107 bits (228), Expect = 9e-023
Identities = 44/77 (57%), Positives = 61/77 (79%)
Frame = +3 / +3
Query: 30 YHLNITKKITKDNQSVLVYCFSWVVIFVILLVMKTVSVGRRRFSAEFQLVFRLIKGLIFI 209
Y L I +++SVLVY SWVVI ++LLV+KTVS+GRRRFSA+FQL+FRL+KGL+FI
Sbjct: 564 YGLVYHLNIAHEHRSVLVYALSWVVIAIVLLVLKTVSMGRRRFSADFQLMFRLLKGLLFI 743
Query: 210 TFTAIVVILIAIPGMTV 260
F +++ ILI + G+T+
Sbjct: 744 GFLSVLTILIVVCGLTI 794
>gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_G11_A029 3', mRNA sequence
Length = 569
Score = 107 bits (228), Expect = 9e-023
Identities = 42/84 (50%), Positives = 60/84 (71%)
Frame = +3 / +2
Query: 285 AFMPTGWGLXXXXXAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAXXXFVSEF 464
AF+PTGWG+ A +P++ + GLW SI++L R Y+ MG+++F P+A + FVS F
Sbjct: 2 AFIPTGWGILCLGIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVAMCSWLPFVSTF 181
Query: 465 QTRMLFNQAFSXGLQISRIXXGHK 536
QTR++FNQAFS GL+IS I G+K
Sbjct: 182 QTRLMFNQAFSRGLEISLILAGNK 253
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 286,272,851
Number of Sequences: 355925
Number of extensions: 3696605
Number of successful extensions: 27146
Number of sequences better than 1.0e-020: 29
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9920846680
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)