TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.1
(690 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed... 184 6e-046
gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch... 184 6e-046
gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus ni... 184 6e-046
gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library P... 181 4e-045
gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clon... 171 4e-042
gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pin... 171 4e-042
gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus adde... 171 4e-042
gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pin... 170 8e-042
gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pin... 170 8e-042
gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compr... 166 1e-040
gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clon... 165 3e-040
gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pin... 161 5e-039
gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus adde... 152 2e-036
gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus adde... 138 3e-032
gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side ... 138 4e-032
gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed... 138 4e-032
gb|BF049746.1|BF049746 NXCI_106_F09_F NXCI (Nsf Xylem Compr... 129 2e-029
gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus ni... 126 1e-028
gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magn... 125 3e-028
gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magn... 125 3e-028
gb|AW011545.1|AW011545 ST22A12 Pine TriplEx shoot tip libra... 103 1e-021
gb|CD021034.1|CD021034 NXNV_126_G03_F Nsf Xylem Normal wood... 102 3e-021
>gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_G03_A022 5', mRNA sequence
Length = 773
Score = 184 bits (396), Expect = 6e-046
Identities = 75/106 (70%), Positives = 88/106 (83%)
Frame = +1 / +2
Query: 46 GMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 225
G+TV D+F C LAFMPTGW LL IAQA RP+ ++TG S+++LARGYE +MGLLLFTP+
Sbjct: 329 GLTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPV 508
Query: 226 AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE* 363
A LAWFPFVSEFQTR+LFNQAFSRGLQISRIL G KKD + + E*
Sbjct: 509 AILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE* 646
>gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_39_G06_A034 5', mRNA sequence
Length = 683
Score = 184 bits (396), Expect = 6e-046
Identities = 75/106 (70%), Positives = 88/106 (83%)
Frame = +1 / -2
Query: 46 GMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 225
G+TV D+F C LAFMPTGW LL IAQA RP+ ++TG S+++LARGYE +MGLLLFTP+
Sbjct: 580 GLTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPV 401
Query: 226 AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE* 363
A LAWFPFVSEFQTR+LFNQAFSRGLQISRIL G KKD + + E*
Sbjct: 400 AILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE* 263
>gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_28_H03_A029 3', mRNA sequence
Length = 692
Score = 184 bits (396), Expect = 6e-046
Identities = 75/106 (70%), Positives = 88/106 (83%)
Frame = +1 / +2
Query: 46 GMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 225
G+TV D+F C LAFMPTGW LL IAQA RP+ ++TG S+++LARGYE +MGLLLFTP+
Sbjct: 2 GLTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPV 181
Query: 226 AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE* 363
A LAWFPFVSEFQTR+LFNQAFSRGLQISRIL G KKD + + E*
Sbjct: 182 AILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE* 319
>gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 675
Score = 181 bits (390), Expect = 4e-045
Identities = 70/93 (75%), Positives = 80/93 (86%)
Frame = +1 / +1
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
MTV D+F CILAFMPTGW +L IAQ +P +H+ G WGS++ALARGYE +MGLLLF P+A
Sbjct: 394 MTVRDLFACILAFMPTGWAILQIAQTCKPFVHRIGFWGSVRALARGYEFIMGLLLFAPVA 573
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 327
LAWFPFVSEFQTR+LFNQAFSRGLQISRIL G
Sbjct: 574 VLAWFPFVSEFQTRLLFNQAFSRGLQISRILAG 672
>gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clone RS15C01, mRNA sequence
Length = 488
Score = 171 bits (368), Expect = 4e-042
Identities = 67/96 (69%), Positives = 77/96 (80%)
Frame = +1 / +2
Query: 46 GMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 225
G+T+ D+F C LAFMPTGW L IA A RP++ G W S++ALAR Y+ +MGLLLFTP+
Sbjct: 83 GLTISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPV 262
Query: 226 AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
A LAWFPFVSEFQTR LFNQAFSRGLQISRIL G K
Sbjct: 263 AILAWFPFVSEFQTRFLFNQAFSRGLQISRILAGRK 370
>gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 3', mRNA sequence
Length = 769
Score = 171 bits (368), Expect = 4e-042
Identities = 66/96 (68%), Positives = 78/96 (81%)
Frame = +1 / +1
Query: 46 GMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 225
G+T+ D+F C LAFMPTGW L IA A RP++ + G W S++ALAR Y+ +MGL+LFTP+
Sbjct: 112 GLTISDLFACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPV 291
Query: 226 AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
A LAWFPFVSEFQTR LFNQAFSRGLQISRIL G K
Sbjct: 292 AILAWFPFVSEFQTRFLFNQAFSRGLQISRILAGRK 399
>gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 5', mRNA sequence
Length = 804
Score = 171 bits (368), Expect = 4e-042
Identities = 66/96 (68%), Positives = 78/96 (81%)
Frame = +1 / +1
Query: 46 GMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 225
G+T+ D+F C LAFMPTGW L IA A RP++ + G W S++ALAR Y+ +MGL+LFTP+
Sbjct: 109 GLTISDLFACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPV 288
Query: 226 AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
A LAWFPFVSEFQTR LFNQAFSRGLQISRIL G K
Sbjct: 289 AILAWFPFVSEFQTRFLFNQAFSRGLQISRILAGRK 396
>gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 3', mRNA sequence
Length = 820
Score = 170 bits (366), Expect = 8e-042
Identities = 69/98 (70%), Positives = 79/98 (80%)
Frame = +1 / +3
Query: 46 GMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 225
G+T+ D+FVC LAFMPTGW L IA A RP+ GLW S++ALAR YE +MGL LFTP+
Sbjct: 42 GLTIADLFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSYEYVMGLHLFTPV 221
Query: 226 AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKD 339
A LAWFPFVSEFQ+R+LFNQAFSRGLQISRIL G K D
Sbjct: 222 AILAWFPFVSEFQSRLLFNQAFSRGLQISRILTGRK*D 335
>gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 5', mRNA sequence
Length = 501
Score = 170 bits (366), Expect = 8e-042
Identities = 69/98 (70%), Positives = 79/98 (80%)
Frame = +1 / +2
Query: 46 GMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 225
G+T+ D+FVC LAFMPTGW L IA A RP+ GLW S++ALAR YE +MGL LFTP+
Sbjct: 50 GLTIADLFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSYEYVMGLHLFTPV 229
Query: 226 AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHKKD 339
A LAWFPFVSEFQ+R+LFNQAFSRGLQISRIL G K D
Sbjct: 230 AILAWFPFVSEFQSRLLFNQAFSRGLQISRILTGRK*D 343
>gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_162_C02 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 381
Score = 166 bits (358), Expect = 1e-040
Identities = 66/95 (69%), Positives = 77/95 (81%)
Frame = +1 / +1
Query: 79 LAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSE 258
LAFMPTGW +L IAQ + +H+ G WGS++ALARGYE +MGLLLF PIA LAWFPFVSE
Sbjct: 1 LAFMPTGWAILQIAQTCKSFVHRIGFWGSVRALARGYEFIMGLLLFAPIAVLAWFPFVSE 180
Query: 259 FQTRMLFNQAFSRGLQISRILGGHKKDRGTRNKE* 363
FQTR+LFNQ F GLQISRIL G KKD +++KE*
Sbjct: 181 FQTRLLFNQXFXXGLQISRILAGRKKDWSSKSKE* 285
>gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clone RS11G06, mRNA sequence
Length = 551
Score = 165 bits (355), Expect = 3e-040
Identities = 65/96 (67%), Positives = 75/96 (78%)
Frame = +1 / +3
Query: 46 GMTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPI 225
G+T+ D+F C LAFMPTGW L IA A RP++ G W S++ALAR Y+ +MGLLLFTP+
Sbjct: 75 GLTISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPV 254
Query: 226 AFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
A LAWFPFVSEFQTR LFNQAFSRGL SRIL G K
Sbjct: 255 AILAWFPFVSEFQTRFLFNQAFSRGLXNSRILAGRK 362
>gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 3', mRNA sequence
Length = 760
Score = 161 bits (346), Expect = 5e-039
Identities = 63/89 (70%), Positives = 72/89 (80%)
Frame = +1 / +1
Query: 67 FVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFP 246
F C LAFMPTGW L IA A RP++ + G W S++ALAR Y+ +MGL+LFTP+A LAWFP
Sbjct: 1 FACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFP 180
Query: 247 FVSEFQTRMLFNQAFSRGLQISRILGGHK 333
FVSEFQTR LFNQAFSRGLQISRIL G K
Sbjct: 181 FVSEFQTRFLFNQAFSRGLQISRILAGRK 267
>gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 3', mRNA sequence
Length = 806
Score = 152 bits (327), Expect = 2e-036
Identities = 60/84 (71%), Positives = 69/84 (82%)
Frame = +1 / +1
Query: 82 AFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEF 261
AFMPTGW L IA A RP++ + G W S++ALAR Y+ +MGL+LFTP+A LAWFPFVSEF
Sbjct: 1 AFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFPFVSEF 180
Query: 262 QTRMLFNQAFSRGLQISRILGGHK 333
QTR LFNQAFSRGLQISRIL G K
Sbjct: 181 QTRFLFNQAFSRGLQISRILAGRK 252
>gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_H10_A029 5', mRNA sequence
Length = 691
Score = 138 bits (297), Expect = 3e-032
Identities = 56/95 (58%), Positives = 72/95 (75%)
Frame = +1 / -2
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
+TV D+F ILAF+PTGW ++ +A + V+ GLW S+ A+AR Y+ MG+LLF PI
Sbjct: 624 LTVTDLFASILAFVPTGWLIICLAITWKSVVKSLGLWKSVSAIARFYDAGMGILLFIPIV 445
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
L+WFPFVS FQTR+LFNQAFSRGL+IS IL G+K
Sbjct: 444 VLSWFPFVSTFQTRLLFNQAFSRGLEISLILAGNK 340
>gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_002_B01 5' similar to Arabidopsis thaliana
sequence At5g13000 callose synthase catalytic subunit
-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 447
Score = 138 bits (296), Expect = 4e-032
Identities = 55/73 (75%), Positives = 64/73 (87%)
Frame = +1 / +1
Query: 145 KTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILG 324
+ G WGS++ALARGYE +MGLLLF P+A LAWFPFVSEFQTR+LFNQAFSRGLQISRIL
Sbjct: 1 RIGFWGSVRALARGYEFIMGLLLFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQISRILA 180
Query: 325 GHKKDRGTRNKE* 363
G KKD +++KE*
Sbjct: 181 GRKKDWSSKSKE* 219
>gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_B01_A021 3', mRNA sequence
Length = 559
Score = 138 bits (296), Expect = 4e-032
Identities = 52/91 (57%), Positives = 72/91 (79%)
Frame = +1 / +3
Query: 61 DIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAW 240
D+F ILAF+PTGWG+L +A A +P++ + GLW SI++L R Y+ MG+++F P+A +W
Sbjct: 6 DVFASILAFIPTGWGILCLAIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVALCSW 185
Query: 241 FPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
PFVS FQTR++FNQAFSRGL+IS IL G+K
Sbjct: 186 LPFVSTFQTRLMFNQAFSRGLEISLILAGNK 278
>gb|BF049746.1|BF049746 NXCI_106_F09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_106_F09 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 213
Score = 129 bits (277), Expect = 2e-029
Identities = 49/71 (69%), Positives = 57/71 (80%)
Frame = +1 / +1
Query: 79 LAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSE 258
LAFMPTGW +L IAQ + +H+ G WGS++ALARGYE +MGLLLF P A LAWFPFVSE
Sbjct: 1 LAFMPTGWAILQIAQTCKXFVHRIGFWGSVRALARGYEFIMGLLLFAPXAVLAWFPFVSE 180
Query: 259 FQTRMLFNQAF 291
FQTR+LFN F
Sbjct: 181 FQTRLLFNXXF 213
>gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_G11_A029 3', mRNA sequence
Length = 569
Score = 126 bits (270), Expect = 1e-028
Identities = 47/84 (55%), Positives = 66/84 (78%)
Frame = +1 / +2
Query: 82 AFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEF 261
AF+PTGWG+L + A +P++ + GLW SI++L R Y+ MG+++F P+A +W PFVS F
Sbjct: 2 AFIPTGWGILCLGIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVAMCSWLPFVSTF 181
Query: 262 QTRMLFNQAFSRGLQISRILGGHK 333
QTR++FNQAFSRGL+IS IL G+K
Sbjct: 182 QTRLMFNQAFSRGLEISLILAGNK 253
>gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 3', mRNA sequence
Length = 872
Score = 125 bits (268), Expect = 3e-028
Identities = 48/92 (52%), Positives = 67/92 (72%)
Frame = +1 / +2
Query: 58 LDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLA 237
+D+ +LA MPTGWGL+ IAQ +RP++ T +W + A+AR YE++ G+++ P+A L+
Sbjct: 335 IDLITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIPVALLS 514
Query: 238 WFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
W P QTR+LFN+AFSRGLQISRIL G K
Sbjct: 515 WLPGFQTLQTRILFNEAFSRGLQISRILVGKK 610
>gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 5', mRNA sequence
Length = 763
Score = 125 bits (268), Expect = 3e-028
Identities = 48/92 (52%), Positives = 67/92 (72%)
Frame = +1 / +3
Query: 58 LDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIAFLA 237
+D+ +LA MPTGWGL+ IAQ +RP++ T +W + A+AR YE++ G+++ P+A L+
Sbjct: 468 IDLITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIPVALLS 647
Query: 238 WFPFVSEFQTRMLFNQAFSRGLQISRILGGHK 333
W P QTR+LFN+AFSRGLQISRIL G K
Sbjct: 648 WLPGFQTLQTRILFNEAFSRGLQISRILVGKK 743
>gb|AW011545.1|AW011545 ST22A12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST22A12, mRNA sequence
Length = 578
Score = 103 bits (220), Expect = 1e-021
Identities = 38/86 (44%), Positives = 61/86 (70%)
Frame = +1 / +3
Query: 49 MTVLDIFVCILAFMPTGWGLLLIAQAIRPVIHKTGLWGSIKALARGYEILMGLLLFTPIA 228
+ ++D+ +LAF+PTGWGL+LIAQ ++ +H +W ++ A+AR YEI G+++ P+A
Sbjct: 258 LKLVDLVTSLLAFVPTGWGLILIAQVLKSFLHYNIVWETVIAVARLYEITFGIIVMIPMA 437
Query: 229 FLAWFPFVSEFQTRMLFNQAFSRGLQ 306
L+W P QTR+LFN+AF +GL+
Sbjct: 438 VLSWLPGFQATQTRILFNEAFXKGLK 515
>gb|CD021034.1|CD021034 NXNV_126_G03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_126_G03 5' similar to Arabidopsis thaliana
sequence At1g05570 putative glucan synthase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 171
Score = 102 bits (217), Expect = 3e-021
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = +1 / +2
Query: 163 SIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 327
S++ALARGYE +MGLLLF P+A LAWFPFVSEFQTR+LFN FS GL SRIL G
Sbjct: 2 SVRALARGYEFIMGLLLFAPVAVLAWFPFVSEFQTRLLFNXXFSXGLXXSRILAG 166
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 364,281,041
Number of Sequences: 355925
Number of extensions: 5306991
Number of successful extensions: 40864
Number of sequences better than 1.0e-020: 29
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9543423165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)