TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405117.2.2
(800 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR014514.1|DR014514 HEAT1_50_A06.b1_A029 Root at 37 C fo... 100 1e-033
gb|DR109530.1|DR109530 RTS1_3_A06.b1_A029 Roots minus sulfu... 98 5e-033
gb|CR394075.1|CR394075 CR394075 RN Pinus pinaster cDNA clon... 86 2e-029
gb|CX712742.1|CX712742 RTPQ1_4_B01.g2_A032 Roots treated wi... 106 2e-029
gb|CF392035.1|CF392035 RTDR3_12_A10.g1_A022 Loblolly pine r... 106 2e-029
gb|CO365044.1|CO365044 RTK1_23_G08.b1_A029 Roots minus pota... 92 1e-028
gb|DR389051.1|DR389051 RTHG1_32_D01.b1_A029 Roots plus adde... 92 1e-028
gb|DR742826.1|DR742826 RTCU1_7_F03.b2_A029 Roots plus added... 92 1e-028
gb|CO166641.1|CO166641 FLD1_63_A08.g1_A029 Root flooded Pin... 84 3e-028
gb|DR014592.1|DR014592 HEAT1_50_A06.g1_A029 Root at 37 C fo... 100 5e-028
gb|AW869898.1|AW869898 NXNV_122_G11_F Nsf Xylem Normal wood... 84 5e-028
gb|CF392748.1|CF392748 RTDR3_19_C07.b1_A022 Loblolly pine r... 80 5e-028
dbj|BD236784.1| Materials and method for modification of pl... 81 5e-028
gb|CO158717.1|CO158717 FLD1_8_F08.g1_A029 Root flooded Pinu... 81 7e-028
gb|DN627807.1|DN627807 EST978623 Subtracted pine embryo lib... 102 1e-027
gb|CO364599.1|CO364599 RTK1_16_E02.g1_A029 Roots minus pota... 102 1e-027
gb|DR025172.1|DR025172 STRS1_70_C05.b1_A034 Shoot tip pitch... 79 1e-027
gb|CO364519.1|CO364519 RTK1_16_E02.b1_A029 Roots minus pota... 102 1e-027
gb|DT630120.1|DT630120 EST1154532 Subtracted pine embryo li... 102 1e-027
gb|DR101339.1|DR101339 STRR1_72_E08.b1_A033 Stem Response R... 103 1e-027
gb|DN631501.1|DN631501 EST982317 Subtracted pine embryo lib... 102 1e-027
gb|CO362853.1|CO362853 RTK1_6_D09.b1_A029 Roots minus potas... 102 1e-027
gb|DR060057.1|DR060057 RTNIT1_25_A01.g1_A029 Roots minus ni... 102 1e-027
gb|CF474487.1|CF474487 RTWW2_9_F05.b1_A021 Well-watered lob... 102 1e-027
gb|DR112944.1|DR112944 RTS1_31_G04.g1_A029 Roots minus sulf... 102 1e-027
gb|CF392040.1|CF392040 RTDR3_12_E11.g1_A022 Loblolly pine r... 105 1e-027
dbj|BD236780.1| Materials and method for modification of pl... 102 2e-027
dbj|BD236700.1| Materials and method for modification of pl... 106 2e-027
gb|CO196963.1|CO196963 GEO1_3_A02.b1_A029 Root gravitropism... 78 3e-027
gb|DR069381.1|DR069381 RTDK1_7_A07.b1_A029 Roots, dark Pinu... 100 4e-027
gb|DT630375.1|DT630375 EST1154787 Subtracted pine embryo li... 100 5e-027
gb|CO162167.1|CO162167 FLD1_33_C09.g1_A029 Root flooded Pin... 79 5e-027
gb|DN632414.1|DN632414 EST983230 Subtracted pine embryo lib... 100 5e-027
gb|CF389002.1|CF389002 RTDR2_16_H08.g1_A021 Loblolly pine r... 105 6e-027
gb|CF398188.1|CF398188 RTDS3_21_H03.g1_A022 Drought-stresse... 77 9e-027
gb|CX648468.1|CX648468 COLD1_28_G08.g1_A029 Root cold Pinus... 77 1e-026
gb|CX648384.1|CX648384 COLD1_28_G08.b1_A029 Root cold Pinus... 77 1e-026
gb|CX712674.1|CX712674 RTPQ1_4_B01.b2_A032 Roots treated wi... 97 1e-026
gb|CF398098.1|CF398098 RTDS3_21_H03.b1_A022 Drought-stresse... 77 1e-026
dbj|BD236713.1| Materials and method for modification of pl... 103 2e-026
gb|CF476169.1|CF476169 RTWW2_21_A09.g1_A021 Well-watered lo... 103 3e-026
gb|CF391325.1|CF391325 RTDR3_1_G03.b1_A022 Loblolly pine ro... 103 3e-026
gb|AL750622.1|AL750622 AL750622 RN Pinus pinaster cDNA clon... 84 4e-026
gb|DR014494.1|DR014494 HEAT1_49_G08.g1_A029 Root at 37 C fo... 98 4e-026
gb|CO201770.1|CO201770 RTCNT2_8_B11.b1_A029 Root control 2 ... 98 4e-026
gb|DR744308.1|DR744308 RTCU1_21_D04.g1_A029 Roots plus adde... 98 4e-026
gb|CO367098.1|CO367098 RTK1_32_D07.b1_A029 Roots minus pota... 98 4e-026
gb|CF400432.1|CF400432 RTWW1_5_B03.g1_A015 Well-watered lob... 98 4e-026
gb|DR014413.1|DR014413 HEAT1_49_G08.b1_A029 Root at 37 C fo... 98 4e-026
gb|CO362008.1|CO362008 NDL2_8_B10.g1_A029 Needles control 2... 98 4e-026
gb|CF400128.1|CF400128 RTWW1_3_C08.g1_A015 Well-watered lob... 98 4e-026
gb|DR023146.1|DR023146 STRS1_55_F06.g1_A034 Shoot tip pitch... 98 4e-026
gb|CO363007.1|CO363007 RTK1_7_C06.b1_A029 Roots minus potas... 98 4e-026
gb|CO201845.1|CO201845 RTCNT2_8_B11.g1_A029 Root control 2 ... 98 4e-026
gb|DR160998.1|DR160998 RTFE1_9_F01.b1_A029 Roots minus iron... 98 4e-026
gb|CF401695.1|CF401695 RTWW1_14_C10.g1_A015 Well-watered lo... 98 4e-026
gb|DR090010.1|DR090010 RTAL1_12_E04.b1_A029 Roots plus adde... 98 4e-026
gb|CF476704.1|CF476704 RTWW3_3_B12.b1_A022 Well-watered lob... 98 4e-026
gb|BX254013.1|BX254013 BX254013 Pinus pinaster differenciat... 98 4e-026
gb|CX715566.1|CX715566 RTPQ1_35_B05.b1_A032 Roots treated w... 98 4e-026
gb|CF475177.1|CF475177 RTWW2_14_D03.g1_A021 Well-watered lo... 98 4e-026
gb|CF673140.1|CF673140 RTCNT1_76_H09.b1_A029 Root control P... 98 4e-026
gb|BQ702509.1|BQ702509 NXSI_129_D10_F NXSI (Nsf Xylem Side ... 98 4e-026
gb|CF664119.1|CF664119 RTCNT1_7_A06.g1_A029 Root control Pi... 98 4e-026
gb|AW289496.1|AW289496 NXNV001C09F Nsf Xylem Normal wood Ve... 84 6e-026
gb|CD028036.1|CD028036 NXNV001C09 Nsf Xylem Normal wood Ver... 84 6e-026
gb|BF777451.1|BF777451 NXSI_071_G05_F NXSI (Nsf Xylem Side ... 81 6e-026
gb|BF610287.1|BF610287 NXSI_057_D08_F NXSI (Nsf Xylem Side ... 81 7e-026
gb|CO365852.1|CO365852 RTK1_19_D03.g1_A029 Roots minus pota... 81 8e-026
gb|DN608753.1|DN608753 EST961803 Subtracted pine embryo lib... 81 8e-026
gb|DN609016.1|DN609016 EST962066 Subtracted pine embryo lib... 81 8e-026
gb|DT629699.1|DT629699 EST1156269 Subtracted pine embryo li... 81 8e-026
gb|DR053945.1|DR053945 RTCA1_14_G03.b1_A029 Roots minus cal... 81 8e-026
gb|DN611788.1|DN611788 EST964838 Subtracted pine embryo lib... 81 8e-026
gb|DR112576.1|DR112576 RTS1_29_D06.b1_A029 Roots minus sulf... 81 8e-026
gb|BX678657.1|BX678657 BX678657 RS Pinus pinaster cDNA clon... 81 8e-026
gb|AL750933.1|AL750933 AL750933 RS Pinus pinaster cDNA clon... 81 8e-026
gb|BQ695909.1|BQ695909 NXPV_034_B08_F NXPV (Nsf Xylem Plani... 81 8e-026
gb|BQ697078.1|BQ697078 NXPV_049_B10_F NXPV (Nsf Xylem Plani... 81 1e-025
gb|CO364447.1|CO364447 RTK1_15_F06.g1_A029 Roots minus pota... 98 1e-025
gb|CO366377.1|CO366377 RTK1_27_B08.g1_A029 Roots minus pota... 98 1e-025
gb|CO365644.1|CO365644 RTK1_18_G08.b1_A029 Roots minus pota... 98 1e-025
gb|DR388772.1|DR388772 RTHG1_30_H08.b1_A029 Roots plus adde... 98 1e-025
gb|DR119274.1|DR119274 RTMG1_22_F08.b1_A029 Roots minus mag... 98 1e-025
gb|DR060016.1|DR060016 RTNIT1_25_E02.b1_A029 Roots minus ni... 98 1e-025
gb|CF478358.1|CF478358 RTWW3_18_A09.g1_A022 Well-watered lo... 96 1e-025
gb|BG832568.1|BG832568 NXPV_076_F01_F NXPV (Nsf Xylem Plani... 81 1e-025
gb|BX252092.1|BX252092 BX252092 Pinus pinaster differenciat... 71 2e-025
gb|BQ696128.1|BQ696128 NXPV_036_F10_F NXPV (Nsf Xylem Plani... 81 2e-025
dbj|BD236710.1| Materials and method for modification of pl... 81 2e-025
gb|AW289793.1|AW289793 NXNV006F07F Nsf Xylem Normal wood Ve... 81 2e-025
gb|CD028410.1|CD028410 NXNV006F07 Nsf Xylem Normal wood Ver... 81 2e-025
gb|BG832827.1|BG832827 NXPV_081_B10_F NXPV (Nsf Xylem Plani... 81 2e-025
gb|BQ698435.1|BQ698435 NXPV_069_H02_F NXPV (Nsf Xylem Plani... 81 2e-025
gb|BI202790.1|BI202790 NXPV_090_E07_F NXPV (Nsf Xylem Plani... 81 2e-025
gb|BQ695956.1|BQ695956 NXPV_034_G08_F NXPV (Nsf Xylem Plani... 81 2e-025
gb|CO367920.1|CO367920 RTK1_37_B10.g1_A029 Roots minus pota... 97 2e-025
gb|CF403048.1|CF403048 RTWW1_24_H09.g1_A015 Well-watered lo... 97 2e-025
gb|CO197092.1|CO197092 GEO1_3_G10.g1_A029 Root gravitropism... 97 2e-025
gb|AL750591.1|AL750591 AL750591 RN Pinus pinaster cDNA clon... 79 2e-025
gb|AW290172.1|AW290172 NXNV015B09F Nsf Xylem Normal wood Ve... 98 2e-025
gb|CD026837.1|CD026837 NXNV015B09 Nsf Xylem Normal wood Ver... 98 2e-025
gb|BQ697463.1|BQ697463 NXPV_056_F10_F NXPV (Nsf Xylem Plani... 81 2e-025
gb|DR181663.1|DR181663 RTMNUT1_40_F05.b2_A029 Roots minus m... 81 2e-025
gb|CF391332.1|CF391332 RTDR3_1_G07.b1_A022 Loblolly pine ro... 81 2e-025
gb|CV032719.1|CV032719 RTNACL1_18_A01.b1_A029 Roots plus ad... 81 2e-025
gb|DN632413.1|DN632413 EST983229 Subtracted pine embryo lib... 81 2e-025
gb|CO159044.1|CO159044 FLD1_11_B01.b1_A029 Root flooded Pin... 81 3e-025
gb|DN632279.1|DN632279 EST983095 Subtracted pine embryo lib... 81 3e-025
gb|CF673112.1|CF673112 RTCNT1_76_E05.b1_A029 Root control P... 81 3e-025
gb|DR111723.1|DR111723 RTS1_19_G01.g1_A029 Roots minus sulf... 81 3e-025
gb|DN631688.1|DN631688 EST982504 Subtracted pine embryo lib... 81 3e-025
gb|DN632237.1|DN632237 EST983053 Subtracted pine embryo lib... 81 3e-025
gb|CF673121.1|CF673121 RTCNT1_76_F05.b1_A029 Root control P... 81 3e-025
gb|DT629207.1|DT629207 EST1155777 Subtracted pine embryo li... 79 3e-025
gb|DN614133.1|DN614133 EST967183 Subtracted pine embryo lib... 79 3e-025
gb|DN608618.1|DN608618 EST961668 Subtracted pine embryo lib... 84 3e-025
gb|DT627604.1|DT627604 EST1156353 Subtracted pine embryo li... 84 3e-025
gb|DT629590.1|DT629590 EST1156160 Subtracted pine embryo li... 84 3e-025
gb|DN609269.1|DN609269 EST962319 Subtracted pine embryo lib... 84 3e-025
gb|DR118060.1|DR118060 RTMG1_10_H07.g1_A029 Roots minus mag... 79 3e-025
dbj|BD236758.1| Materials and method for modification of pl... 95 3e-025
gb|DN628728.1|DN628728 EST979544 Subtracted pine embryo lib... 81 3e-025
gb|DN631344.1|DN631344 EST982160 Subtracted pine embryo lib... 81 3e-025
gb|DN631607.1|DN631607 EST982423 Subtracted pine embryo lib... 81 3e-025
gb|DN632322.1|DN632322 EST983138 Subtracted pine embryo lib... 81 3e-025
gb|DN632381.1|DN632381 EST983197 Subtracted pine embryo lib... 81 3e-025
gb|DN633618.1|DN633618 EST984434 Subtracted pine embryo lib... 81 3e-025
gb|DN634348.1|DN634348 EST985164 Subtracted pine embryo lib... 81 3e-025
gb|DN629845.1|DN629845 EST980661 Subtracted pine embryo lib... 81 3e-025
gb|BG318448.1|BG318448 NXPV_013_G05_F NXPV (Nsf Xylem Plani... 81 3e-025
gb|DR056255.1|DR056255 RTCA1_29_C04.b1_A029 Roots minus cal... 81 3e-025
gb|BQ696195.1|BQ696195 NXPV_039_D12_F NXPV (Nsf Xylem Plani... 80 3e-025
gb|DR160605.1|DR160605 RTFE1_7_B07.b1_A029 Roots minus iron... 81 3e-025
gb|CV032782.1|CV032782 RTNACL1_18_G05.b1_A029 Roots plus ad... 81 3e-025
gb|CO367102.1|CO367102 RTK1_32_D11.b1_A029 Roots minus pota... 81 3e-025
dbj|BD236751.1| Materials and method for modification of pl... 81 5e-025
gb|CF388728.1|CF388728 RTDR2_15_D01.b1_A021 Loblolly pine r... 97 5e-025
gb|BG318443.1|BG318443 NXPV_013_F12_F NXPV (Nsf Xylem Plani... 81 5e-025
gb|CO361939.1|CO361939 NDL2_8_C07.b1_A029 Needles control 2... 80 6e-025
gb|CO199765.1|CO199765 GEO2_3_G12.b1_A032 Root gravitropism... 80 6e-025
gb|CO164465.1|CO164465 FLD1_48_E06.b1_A029 Root flooded Pin... 80 6e-025
gb|DR051576.1|DR051576 RTBOR1_31_B03.b1_A029 Roots plus add... 95 7e-025
dbj|BD236744.1| Materials and method for modification of pl... 92 7e-025
gb|DR180351.1|DR180351 RTMNUT1_28_C07.b1_A029 Roots minus m... 79 1e-024
gb|BX251676.1|BX251676 BX251676 Pinus pinaster differenciat... 98 1e-024
gb|CO168572.1|CO168572 NDL1_1_A11.b1_A029 Needles control P... 96 2e-024
gb|CX714297.1|CX714297 RTPQ1_20_G05.b1_A032 Roots treated w... 96 2e-024
gb|CF389178.1|CF389178 RTDR2_9_D12.b1_A021 Loblolly pine ro... 96 2e-024
gb|CF391003.1|CF391003 RTDR3_3_F09.b1_A022 Loblolly pine ro... 96 2e-024
gb|BQ634624.1|BQ634624 NXRV071_C05_F NXRV (Nsf Xylem Root w... 96 2e-024
gb|CX651071.1|CX651071 COLD1_50_A03.b1_A029 Root cold Pinus... 96 2e-024
gb|CO169016.1|CO169016 NDL1_4_C11.b1_A029 Needles control P... 96 2e-024
gb|DR743610.1|DR743610 RTCU1_17_B07.b1_A029 Roots plus adde... 96 2e-024
gb|CF670693.1|CF670693 RTCNT1_51_H12.g1_A029 Root control P... 96 2e-024
gb|CF388991.1|CF388991 RTDR2_16_F03.g1_A021 Loblolly pine r... 96 2e-024
gb|BF778402.1|BF778402 NXSI_082_H01_F NXSI (Nsf Xylem Side ... 98 2e-024
gb|CF670684.1|CF670684 RTCNT1_51_G12.g1_A029 Root control P... 96 2e-024
gb|CO200520.1|CO200520 GEO2_8_A04.b1_A032 Root gravitropism... 96 2e-024
gb|CF664525.1|CF664525 RTCNT1_10_H08.b1_A029 Root control P... 96 2e-024
gb|CO201504.1|CO201504 RTCNT2_6_E08.b1_A029 Root control 2 ... 96 2e-024
gb|DR100422.1|DR100422 STRR1_64_B12.b1_A033 Stem Response R... 96 2e-024
gb|BE241387.1|BE241387 NXNV_187_F06_F Nsf Xylem Normal wood... 92 3e-024
gb|CF668926.1|CF668926 RTCNT1_39_B08.g1_A029 Root control P... 94 5e-024
gb|CO360950.1|CO360950 NDL2_1_D05.g1_A029 Needles control 2... 96 5e-024
gb|CO201576.1|CO201576 RTCNT2_6_E08.g1_A029 Root control 2 ... 96 5e-024
gb|CV034467.1|CV034467 RTNACL1_9_D03.b1_A029 Roots plus add... 94 6e-024
gb|CO158667.1|CO158667 FLD1_8_H12.b1_A029 Root flooded Pinu... 94 6e-024
gb|CV034483.1|CV034483 RTNACL1_9_F03.b1_A029 Roots plus add... 94 7e-024
gb|CR394173.1|CR394173 CR394173 RN Pinus pinaster cDNA clon... 74 7e-024
gb|CF389517.1|CF389517 RTDR2_8_B04.b1_A021 Loblolly pine ro... 94 7e-024
gb|CV034476.1|CV034476 RTNACL1_9_E03.b1_A029 Roots plus add... 94 7e-024
gb|CF478465.1|CF478465 RTWW3_20_G08.b1_A022 Well-watered lo... 94 7e-024
gb|CF393423.1|CF393423 RTDR3_13_A10.b1_A022 Loblolly pine r... 94 7e-024
gb|CF475990.1|CF475990 RTWW2_16_B09.b1_A021 Well-watered lo... 94 7e-024
gb|CX650665.1|CX650665 COLD1_47_F07.b1_A029 Root cold Pinus... 94 8e-024
gb|DR072231.1|DR072231 RTDK1_25_A01.b1_A029 Roots, dark Pin... 94 8e-024
gb|DR097098.1|DR097098 STRR1_32_B07.g1_A033 Stem Response R... 94 8e-024
gb|CF475774.1|CF475774 RTWW2_15_D08.b1_A021 Well-watered lo... 94 8e-024
gb|CO364355.1|CO364355 RTK1_15_F04.b1_A029 Roots minus pota... 94 8e-024
gb|CF389210.1|CF389210 RTDR2_9_B04.b1_A021 Loblolly pine ro... 94 8e-024
gb|CO198090.1|CO198090 GEO1_11_E05.b1_A029 Root gravitropis... 94 8e-024
gb|CV034249.1|CV034249 RTNACL1_39_E01.g1_A029 Roots plus ad... 94 8e-024
gb|BX250930.1|BX250930 BX250930 Pinus pinaster differenciat... 94 8e-024
gb|DR097030.1|DR097030 STRR1_32_B07.b1_A033 Stem Response R... 94 8e-024
gb|DR169141.1|DR169141 RTPHOS1_30_G11.b1_A029 Roots minus p... 94 8e-024
gb|DR025443.1|DR025443 STRS1_71_D08.g1_A034 Shoot tip pitch... 94 8e-024
gb|DR178327.1|DR178327 RTMNUT1_11_C04.b1_A029 Roots minus m... 94 8e-024
gb|DR068664.1|DR068664 RTDK1_2_D09.b1_A029 Roots, dark Pinu... 94 8e-024
gb|CO166714.1|CO166714 FLD1_64_B02.b1_A029 Root flooded Pin... 94 9e-024
gb|CX713854.1|CX713854 RTPQ1_14_B11.b1_A032 Roots treated w... 94 9e-024
gb|CF393544.1|CF393544 RTDR3_13_D04.g1_A022 Loblolly pine r... 94 9e-024
gb|CX713889.1|CX713889 RTPQ1_14_B11.g1_A032 Roots treated w... 94 9e-024
gb|DR055160.1|DR055160 RTCA1_22_A02.b1_A029 Roots minus cal... 94 9e-024
gb|DR049828.1|DR049828 RTBOR1_19_H02.b1_A029 Roots plus add... 94 9e-024
gb|CF664045.1|CF664045 RTCNT1_7_A06.b1_A029 Root control Pi... 90 9e-024
gb|CF393529.1|CF393529 RTDR3_13_A10.g1_A022 Loblolly pine r... 94 9e-024
gb|CF671241.1|CF671241 RTCNT1_55_F04.g1_A029 Root control P... 94 9e-024
gb|CX713838.1|CX713838 RTPQ1_13_G08.g1_A032 Roots treated w... 94 9e-024
gb|DR070047.1|DR070047 RTDK1_11_A07.b1_A029 Roots, dark Pin... 94 9e-024
gb|DR089369.1|DR089369 RTAL1_8_F03.b1_A029 Roots plus added... 94 9e-024
gb|CF390680.1|CF390680 RTDR2_20_H12.g1_A021 Loblolly pine r... 94 9e-024
gb|CX650736.1|CX650736 COLD1_47_F07.g1_A029 Root cold Pinus... 94 9e-024
gb|CF391895.1|CF391895 RTDR3_10_A11.g1_A022 Loblolly pine r... 94 9e-024
gb|CF392100.1|CF392100 RTDR3_12_C12.g1_A022 Loblolly pine r... 94 1e-023
gb|DR165423.1|DR165423 RTPHOS1_5_A12.b1_A029 Roots minus ph... 94 1e-023
gb|CO199990.1|CO199990 GEO2_4_F08.g1_A032 Root gravitropism... 94 1e-023
gb|DR181900.1|DR181900 RTMNUT1_41_E04.g1_A029 Roots minus m... 94 1e-023
gb|CX712945.1|CX712945 RTPQ1_5_H08.g1_A032 Roots treated wi... 94 1e-023
gb|CF666139.1|CF666139 RTCNT1_21_C11.b1_A029 Root control P... 94 1e-023
gb|CV034171.1|CV034171 RTNACL1_39_E01.b1_A029 Roots plus ad... 94 1e-023
gb|DR025355.1|DR025355 STRS1_71_D08.b1_A034 Shoot tip pitch... 94 1e-023
gb|DR181814.1|DR181814 RTMNUT1_41_E04.b1_A029 Roots minus m... 94 1e-023
gb|DR025568.1|DR025568 STRS1_72_H11.b1_A034 Shoot tip pitch... 94 1e-023
gb|DR059730.1|DR059730 RTNIT1_19_A06.g1_A029 Roots minus ni... 94 1e-023
gb|DR095098.1|DR095098 STRR1_18_F07.g1_A033 Stem Response R... 94 1e-023
gb|CO200294.1|CO200294 GEO2_6_C09.g1_A032 Root gravitropism... 94 1e-023
gb|DR165499.1|DR165499 RTPHOS1_5_A12.g1_A029 Roots minus ph... 94 1e-023
gb|DR057908.1|DR057908 RTNIT1_8_C01.g1_A029 Roots minus nit... 94 1e-023
gb|DR078685.1|DR078685 RTFEPL1_6_F01.b1_A029 Roots plus add... 94 1e-023
gb|CO200212.1|CO200212 GEO2_6_C09.b1_A032 Root gravitropism... 94 1e-023
gb|CO364445.1|CO364445 RTK1_15_F04.g1_A029 Roots minus pota... 94 1e-023
gb|DR049906.1|DR049906 RTBOR1_19_H02.g1_A029 Roots plus add... 94 1e-023
gb|CF477347.1|CF477347 RTWW3_7_E06.b1_A022 Well-watered lob... 61 1e-023
gb|BE241400.1|BE241400 NXNV_187_H07_F Nsf Xylem Normal wood... 92 1e-023
gb|CO367170.1|CO367170 RTK1_32_D07.g1_A029 Roots minus pota... 98 2e-023
gb|CR392549.1|CR392549 CR392549 RN Pinus pinaster cDNA clon... 86 2e-023
gb|DR160693.1|DR160693 RTFE1_7_B07.g1_A029 Roots minus iron... 81 2e-023
gb|CO166785.1|CO166785 FLD1_64_B02.g1_A029 Root flooded Pin... 94 3e-023
dbj|BD236746.1| Materials and method for modification of pl... 74 3e-023
gb|CO198162.1|CO198162 GEO1_11_E05.g1_A029 Root gravitropis... 94 3e-023
gb|CO169088.1|CO169088 NDL1_4_C11.g1_A029 Needles control P... 96 3e-023
gb|DR167438.1|DR167438 RTPHOS1_18_G01.g1_A029 Roots minus p... 92 4e-023
gb|CO201767.1|CO201767 RTCNT2_8_B07.b1_A029 Root control 2 ... 91 4e-023
gb|DR092064.1|DR092064 RTAL1_26_C05.b1_A029 Roots plus adde... 94 5e-023
gb|DR057209.1|DR057209 RTNIT1_4_G01.b1_A029 Roots minus nit... 91 6e-023
gb|CF392189.1|CF392189 RTDR3_8_F01.b1_A022 Loblolly pine ro... 74 6e-023
gb|BM492575.1|BM492575 NXRV_028_C07_F NXRV (Nsf Xylem Root ... 90 7e-023
gb|CO361483.1|CO361483 NDL2_5_D02.b1_A029 Needles control 2... 107 8e-023
gb|DR058186.1|DR058186 RTNIT1_10_F10.b1_A029 Roots minus ni... 90 9e-023
gb|CF474303.1|CF474303 RTWW2_20_A03.b1_A021 Well-watered lo... 90 1e-022
gb|DR092340.1|DR092340 RTAL1_1_A06.b1_A029 Roots plus added... 63 1e-022
gb|DR058450.1|DR058450 RTNIT1_11_G12.g1_A029 Roots minus ni... 94 1e-022
gb|DR048625.1|DR048625 RTBOR1_10_D07.b1_A029 Roots plus add... 90 2e-022
gb|DR176934.1|DR176934 RTMNUT1_2_A04.b1_A029 Roots minus mi... 90 2e-022
gb|CF666524.1|CF666524 RTCNT1_24_A07.b1_A029 Root control P... 86 2e-022
dbj|BD236729.1| Materials and method for modification of pl... 106 2e-022
dbj|BD236696.1| Materials and method for modification of pl... 84 3e-022
gb|CF390100.1|CF390100 RTDR2_12_C04.g1_A021 Loblolly pine r... 105 3e-022
gb|CF393384.1|CF393384 RTDR3_20_C12.g1_A022 Loblolly pine r... 105 3e-022
gb|DR689074.1|DR689074 EST1079160 Normalized pine embryo li... 105 3e-022
gb|DR689773.1|DR689773 EST1079859 Normalized pine embryo li... 105 3e-022
gb|DT635138.1|DT635138 EST1150069 Normalized pine embryo li... 105 3e-022
gb|BI077356.1|BI077356 NXPV_096_B08_F NXPV (Nsf Xylem Plani... 80 3e-022
gb|DR048951.1|DR048951 RTBOR1_12_G02.b1_A029 Roots plus add... 100 4e-022
gb|CF395400.1|CF395400 RTDS2_11_G06.g1_A021 Drought-stresse... 86 4e-022
dbj|BD236774.1| Materials and method for modification of pl... 90 4e-022
gb|CV035771.1|CV035771 RTNACL1_42_G09.b1_A029 Roots plus ad... 91 5e-022
gb|DR097824.1|DR097824 STRR1_37_F08.b1_A033 Stem Response R... 91 5e-022
gb|BX677428.1|BX677428 BX677428 RN Pinus pinaster cDNA clon... 82 5e-022
gb|CF663376.1|CF663376 RTCNT1_2_B01.g1_A029 Root control Pi... 91 5e-022
gb|DR078768.1|DR078768 RTFEPL1_6_F01.g1_A029 Roots plus add... 88 5e-022
gb|DR161287.1|DR161287 RTFE1_11_A01.b1_A029 Roots minus iro... 91 5e-022
gb|CO170017.1|CO170017 NDL1_11_E01.b1_A029 Needles control ... 91 5e-022
gb|CO168629.1|CO168629 NDL1_1_A11.g1_A029 Needles control P... 96 5e-022
gb|DR080099.1|DR080099 RTFEPL1_20_F02.b1_A029 Roots plus ad... 91 6e-022
gb|CF473198.1|CF473198 RTWW2_1_A09.b1_A021 Well-watered lob... 93 6e-022
dbj|BD236688.1| Materials and method for modification of pl... 104 7e-022
gb|CO165955.1|CO165955 FLD1_58_G05.b1_A029 Root flooded Pin... 81 8e-022
gb|CO166031.1|CO166031 FLD1_58_G05.g1_A029 Root flooded Pin... 81 8e-022
gb|DR018214.1|DR018214 STRS1_21_F05.b1_A034 Shoot tip pitch... 80 9e-022
gb|CV036423.1|CV036423 RTNACL1_59_D12.b1_A029 Roots plus ad... 87 9e-022
gb|CF386077.1|CF386077 RTDR1_8_G11.b1_A015 Loblolly pine ro... 85 1e-021
gb|BG039600.1|BG039600 NXSI_102_A01_F NXSI (Nsf Xylem Side ... 78 2e-021
dbj|BD236764.1| Materials and method for modification of pl... 81 2e-021
gb|CF389493.1|CF389493 RTDR2_7_D07.g1_A021 Loblolly pine ro... 103 2e-021
gb|CO174833.1|CO174833 NDL1_46_C11.g1_A029 Needles control ... 79 2e-021
gb|CF475842.1|CF475842 RTWW2_15_D08.g1_A021 Well-watered lo... 94 2e-021
gb|CF478518.1|CF478518 RTWW3_20_G08.g1_A022 Well-watered lo... 94 2e-021
gb|DR025648.1|DR025648 STRS1_72_H11.g1_A034 Shoot tip pitch... 94 2e-021
gb|CO362936.1|CO362936 RTK1_6_D09.g1_A029 Roots minus potas... 102 3e-021
gb|DR684959.1|DR684959 EST1075036 Normalized pine embryo li... 102 3e-021
gb|DR692899.1|DR692899 EST1082987 Normalized pine embryo li... 102 3e-021
dbj|BD236797.1| Materials and method for modification of pl... 84 3e-021
gb|CD027028.1|CD027028 NXNV019B04 Nsf Xylem Normal wood Ver... 84 6e-021
gb|BE209174.1|BE209174 NXNV_164_H08_F Nsf Xylem Normal wood... 94 8e-021
dbj|BD236711.1| Materials and method for modification of pl... 86 8e-021
>gb|DR014514.1|DR014514 HEAT1_50_A06.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_A06_A029 3', mRNA sequence
Length = 828
Score = 100 bits (212), Expect(2) = 1e-033
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P SQPM++YSSL NADDWAT+GG KTDW+ APF A+YR FK ++C
Sbjct: 272 IRVFPNSEDLGVPYPNSQPMKVYSSLWNADDWATRGGLAKTDWTKAPFVATYRNFKVESC 451
Score = 63.8 bits (133), Expect(2) = 1e-033
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +1 / +2
Query: 301 QQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ 402
++R+RWVQR YM YNYCTD KR+ G P EC+ Q
Sbjct: 569 KERLRWVQRNYMTYNYCTDSKRFPNGFPPECTRQ 670
>gb|DR109530.1|DR109530 RTS1_3_A06.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_A06_A029 3', mRNA sequence
Length = 688
Score = 97.7 bits (207), Expect(2) = 5e-033
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P SQ M++YSSL NADDWAT+GG VKTDW+ APF A+YR FK ++C
Sbjct: 39 IRVFPNSEDLGVPYPNSQRMKVYSSLWNADDWATRGGLVKTDWTKAPFVANYRNFKVESC 218
Score = 63.8 bits (133), Expect(2) = 5e-033
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +1 / +3
Query: 301 QQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ 402
++R+RWVQR YM YNYCTD KR+ G P EC+ Q
Sbjct: 336 KERLRWVQRNYMTYNYCTDSKRFPNGFPPECTRQ 437
>gb|CR394075.1|CR394075 CR394075 RN Pinus pinaster cDNA clone RN73D05_1, mRNA sequence
Length = 556
Score = 86.3 bits (182), Expect(2) = 2e-029
Identities = 34/46 (73%), Positives = 38/46 (82%)
Frame = +2 / +3
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADA 178
+PKSQ MR+YSSL NADDWAT+GG VKTDWS APF AS+R F A A
Sbjct: 87 YPKSQAMRVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNFNAPA 224
Score = 63.4 bits (132), Expect(2) = 2e-029
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +1 / +3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
+ LD +Q+++WV+ YMIY+YC D KR+ QGLPAEC
Sbjct: 246 EALDSNQEQKLQWVRNNYMIYDYCADTKRFPQGLPAEC 359
>gb|CX712742.1|CX712742 RTPQ1_4_B01.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_B01_A032 5', mRNA sequence
Length = 854
Score = 106 bits (226), Expect(2) = 2e-029
Identities = 40/60 (66%), Positives = 48/60 (80%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E +GV FP+++PM +YSS+ NADDWATQGGRVKTDWSHAPF ++Y F DAC
Sbjct: 524 IRVFSNNEKRGVPFPQTRPMGVYSSIWNADDWATQGGRVKTDWSHAPFISTYTSFNIDAC 703
Score = 42.8 bits (87), Expect(2) = 2e-029
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1 / +2
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
L+ + +++WVQ+KYMIYNYC D R+
Sbjct: 761 LNAKQRMQVKWVQQKYMIYNYCKDTVRF 844
>gb|CF392035.1|CF392035 RTDR3_12_A10.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_12_A10_A022 5', mRNA
sequence
Length = 709
Score = 106 bits (226), Expect(2) = 2e-029
Identities = 40/60 (66%), Positives = 48/60 (80%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E +GV FP+++PM +YSS+ NADDWATQGGRVKTDWSHAPF ++Y F DAC
Sbjct: 193 IRVFSNNEKRGVPFPQTRPMGVYSSIWNADDWATQGGRVKTDWSHAPFISTYTSFNIDAC 372
Score = 42.8 bits (87), Expect(2) = 2e-029
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1 / +1
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
L+ + +++WVQ+KYMIYNYC D R+
Sbjct: 430 LNAKQRMQVKWVQQKYMIYNYCKDTVRF 513
>gb|CO365044.1|CO365044 RTK1_23_G08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_G08_A029 3', mRNA sequence
Length = 853
Score = 91.8 bits (194), Expect(2) = 1e-028
Identities = 35/60 (58%), Positives = 42/60 (70%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E+ GV +P Q MR++SS+ N D WATQGGRVK DWS++PF ASY F D C
Sbjct: 363 IRVFANNENIGVPYPNEQAMRVFSSIWNGDQWATQGGRVKIDWSYSPFVASYMNFNTDVC 542
Score = 55.1 bits (114), Expect(2) = 1e-028
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ 402
W L+ Q +++WV+ Y+IY+YC D R+ LPAECS Q
Sbjct: 591 WNQNSLNYAQQGQLQWVRSNYLIYDYCKDYARFNYQLPAECSQQ 722
>gb|DR389051.1|DR389051 RTHG1_32_D01.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_32_D01_A029 3', mRNA sequence
Length = 782
Score = 91.8 bits (194), Expect(2) = 1e-028
Identities = 35/60 (58%), Positives = 42/60 (70%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E+ GV +P Q MR++SS+ N D WATQGGRVK DWS++PF ASY F D C
Sbjct: 291 IRVFANNENIGVPYPNEQAMRVFSSIWNGDQWATQGGRVKIDWSYSPFVASYMNFNTDVC 470
Score = 55.1 bits (114), Expect(2) = 1e-028
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1 / +3
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ 402
W L+ Q +++WV+ Y+IY+YC D R+ LPAECS Q
Sbjct: 519 WNQNSLNYAQQGQLQWVRSNYLIYDYCKDYARFNYQLPAECSQQ 650
>gb|DR742826.1|DR742826 RTCU1_7_F03.b2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_7_F03_A029 3', mRNA sequence
Length = 646
Score = 91.8 bits (194), Expect(2) = 1e-028
Identities = 35/60 (58%), Positives = 42/60 (70%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E+ GV +P Q MR++SS+ N D WATQGGRVK DWS++PF ASY F D C
Sbjct: 41 IRVFANNENIGVPYPNEQAMRVFSSIWNGDQWATQGGRVKIDWSYSPFVASYMNFNTDVC 220
Score = 55.1 bits (114), Expect(2) = 1e-028
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1 / +2
Query: 271 WYNQELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ 402
W L+ Q +++WV+ Y+IY+YC D R+ LPAECS Q
Sbjct: 269 WNQNSLNYAQQGQLQWVRSNYLIYDYCKDYARFNYQLPAECSQQ 400
>gb|CO166641.1|CO166641 FLD1_63_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_63_A08_A029 5', mRNA sequence
Length = 873
Score = 84.5 bits (178), Expect(2) = 3e-028
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = +2 / +3
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADA 178
+P+SQ MR+YSSL NADDWAT+GG VKTDWS APF AS+R F A A
Sbjct: 345 YPRSQAMRVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNFNAAA 482
Score = 61.1 bits (127), Expect(2) = 3e-028
Identities = 19/38 (50%), Positives = 29/38 (76%)
Frame = +1 / +3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
++LD +Q+++WV+ YMIY+YC D R+ QG+PAEC
Sbjct: 504 EDLDSNQEQKLQWVRNNYMIYDYCADTNRFPQGVPAEC 617
>gb|DR014592.1|DR014592 HEAT1_50_A06.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_A06_A029 5', mRNA sequence
Length = 893
Score = 100 bits (212), Expect(2) = 5e-028
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P SQPM++YSSL NADDWAT+GG KTDW+ APF A+YR FK ++C
Sbjct: 536 IRVFPNSEDLGVPYPNSQPMKVYSSLWNADDWATRGGLAKTDWTKAPFVATYRNFKVESC 715
Score = 44.6 bits (91), Expect(2) = 5e-028
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +1 / +2
Query: 301 QQRMRWVQRKYMIYNYCTD 357
++R+RWVQR YM YNYCTD
Sbjct: 833 KERLRWVQRNYMTYNYCTD 889
>gb|AW869898.1|AW869898 NXNV_122_G11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_122_G11 5' similar to Arabidopsis thaliana
sequence At4g25810 xyloglucan endo-1,4-beta-D-glucanase
(XTR-6) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 606
Score = 84.5 bits (178), Expect(2) = 5e-028
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = +2 / +2
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADA 178
+PKSQ M++YSSL NADDWAT+GG VKTDWS APF AS+R F A A
Sbjct: 170 YPKSQAMKVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNFNAAA 307
Score = 60.2 bits (125), Expect(2) = 5e-028
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +1 / +2
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
LD +Q+++WV+ YMIY+YC D K + QGLPAEC
Sbjct: 335 LDSNQEQKLQWVRNNYMIYDYCADTKXFPQGLPAEC 442
>gb|CF392748.1|CF392748 RTDR3_19_C07.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_19_C07_A022 3', mRNA
sequence
Length = 540
Score = 79.9 bits (168), Expect(2) = 5e-028
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +2 / +3
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKA 172
+PK+Q MR+YSSL NADDWAT+GG VKTDW+ APF AS+ F A
Sbjct: 93 YPKNQAMRMYSSLWNADDWATRGGLVKTDWTKAPFVASFSNFSA 224
Score = 64.8 bits (135), Expect(2) = 5e-028
Identities = 21/38 (55%), Positives = 31/38 (81%)
Frame = +1 / +3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
+ LD +Q+++WV++ YMIY+YC+D KR+ QGLPAEC
Sbjct: 255 EALDSNQEQKLQWVRKNYMIYDYCSDTKRFPQGLPAEC 368
>dbj|BD236784.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 500
Score = 81.3 bits (171), Expect(2) = 5e-028
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +2 / +2
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKA 172
+PKSQ MR+YSSL NADDWAT+GG VKTDW+ APF AS+ F A
Sbjct: 212 YPKSQAMRMYSSLWNADDWATRGGLVKTDWTKAPFVASFSNFSA 343
Score = 63.4 bits (132), Expect(2) = 5e-028
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +1 / +2
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
LD +Q+++WV++ YMIY+YC D KR+ QGLPAEC
Sbjct: 380 LDSNEEQKLQWVRKNYMIYDYCADTKRFPQGLPAEC 487
>gb|CO158717.1|CO158717 FLD1_8_F08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_8_F08_A029 5', mRNA sequence
Length = 801
Score = 81.3 bits (171), Expect(2) = 7e-028
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +2 / +1
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKA 172
+PKSQ MR+YSSL NADDWAT+GG VKTDW+ APF AS+ F A
Sbjct: 349 YPKSQAMRMYSSLWNADDWATRGGLVKTDWTKAPFVASFSNFSA 480
Score = 62.9 bits (131), Expect(2) = 7e-028
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +1 / +1
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
LD +Q+++WV++ YMIY+YC D KR+ QGLPAEC
Sbjct: 517 LDSNEEQQLQWVRKNYMIYDYCADTKRFPQGLPAEC 624
>gb|DN627807.1|DN627807 EST978623 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAP90, mRNA sequence
Length = 745
Score = 102 bits (218), Expect(2) = 1e-027
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+SQPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 123 IRVFGNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 302
Score = 40.9 bits (83), Expect(2) = 1e-027
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1 / +3
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
LD + +++WVQ KYM Y+YC D R+ P
Sbjct: 360 LDAKQRLKLKWVQEKYMTYDYCKDSARFPSPPP 458
>gb|CO364599.1|CO364599 RTK1_16_E02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_16_E02_A029 5', mRNA sequence
Length = 873
Score = 102 bits (218), Expect(2) = 1e-027
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+SQPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 338 IRVFGNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 517
Score = 40.5 bits (82), Expect(2) = 1e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +2
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 575 LDAKQRLKLKWVQEKYMTYDYCKDSARF 658
>gb|DR025172.1|DR025172 STRS1_70_C05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_C05_A034 3', mRNA sequence
Length = 849
Score = 78.5 bits (165), Expect(2) = 1e-027
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +2 / +2
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKA 172
+PK+Q MR+Y+SL NADDWAT+GG VKTDW+ APF AS+ F A
Sbjct: 368 YPKNQAMRMYTSLWNADDWATRGGLVKTDWTKAPFVASFSNFSA 499
Score = 64.8 bits (135), Expect(2) = 1e-027
Identities = 21/38 (55%), Positives = 31/38 (81%)
Frame = +1 / +2
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
+ LD +Q+++WV++ YMIY+YC+D KR+ QGLPAEC
Sbjct: 530 EALDSNQEQKLQWVRKNYMIYDYCSDTKRFPQGLPAEC 643
>gb|CO364519.1|CO364519 RTK1_16_E02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_16_E02_A029 3', mRNA sequence
Length = 791
Score = 102 bits (218), Expect(2) = 1e-027
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+SQPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 178 IRVFGNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 357
Score = 40.5 bits (82), Expect(2) = 1e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +1
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 415 LDAKQRLKLKWVQEKYMTYDYCKDSARF 498
>gb|DT630120.1|DT630120 EST1154532 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME524, mRNA sequence
Length = 791
Score = 102 bits (218), Expect(2) = 1e-027
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+SQPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 167 IRVFGNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 346
Score = 40.5 bits (82), Expect(2) = 1e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +2
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 404 LDAKQRLKLKWVQEKYMTYDYCKDSARF 487
>gb|DR101339.1|DR101339 STRR1_72_E08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_72_E08_A033 3', mRNA sequence
Length = 773
Score = 103 bits (219), Expect(2) = 1e-027
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P++QPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y+ F DAC
Sbjct: 80 IRVFANNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFISTYKNFSIDAC 259
Score = 40.0 bits (81), Expect(2) = 1e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +2
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 317 LDAKQRLKLKWVQEKYMTYDYCKDSVRF 400
>gb|DN631501.1|DN631501 EST982317 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACA61, mRNA sequence
Length = 769
Score = 102 bits (218), Expect(2) = 1e-027
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+SQPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 147 IRVFGNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 326
Score = 40.5 bits (82), Expect(2) = 1e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +3
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 384 LDAKQRLKLKWVQEKYMTYDYCKDSARF 467
>gb|CO362853.1|CO362853 RTK1_6_D09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_6_D09_A029 3', mRNA sequence
Length = 706
Score = 102 bits (218), Expect(2) = 1e-027
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+SQPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 13 IRVFGNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 192
Score = 40.5 bits (82), Expect(2) = 1e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +1
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 250 LDAKQRLKLKWVQEKYMTYDYCKDSARF 333
>gb|DR060057.1|DR060057 RTNIT1_25_A01.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_25_A01_A029 5', mRNA sequence
Length = 687
Score = 102 bits (218), Expect(2) = 1e-027
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+SQPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 132 IRVFGNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 311
Score = 40.5 bits (82), Expect(2) = 1e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +3
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 369 LDAKQRLKLKWVQEKYMTYDYCKDSARF 452
>gb|CF474487.1|CF474487 RTWW2_9_F05.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_F05_A021 3', mRNA sequence
Length = 627
Score = 102 bits (218), Expect(2) = 1e-027
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+SQPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 13 IRVFGNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 192
Score = 40.5 bits (82), Expect(2) = 1e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +1
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 250 LDAKQRLKLKWVQEKYMTYDYCKDSARF 333
>gb|DR112944.1|DR112944 RTS1_31_G04.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_31_G04_A029 5', mRNA sequence
Length = 616
Score = 102 bits (218), Expect(2) = 1e-027
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+SQPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 133 IRVFGNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 312
Score = 40.5 bits (82), Expect(2) = 1e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +1
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 370 LDAKQRLKLKWVQEKYMTYDYCKDSARF 453
>gb|CF392040.1|CF392040 RTDR3_12_E11.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_12_E11_A022 5', mRNA
sequence
Length = 788
Score = 105 bits (225), Expect(2) = 1e-027
Identities = 40/60 (66%), Positives = 47/60 (78%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E +GV FP++ PM +YSS+ NADDWATQGGRVKTDWSHAPF ++Y F DAC
Sbjct: 289 IRVFSNNEKRGVPFPQTHPMGVYSSIWNADDWATQGGRVKTDWSHAPFISTYTSFNIDAC 468
Score = 39.6 bits (80), Expect(2) = 1e-027
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +1 / +1
Query: 307 RMRWVQRKYMIYNYCTDPKRY 369
+++WVQ KYMIY+YC D R+
Sbjct: 547 QLKWVQEKYMIYDYCKDSVRF 609
>dbj|BD236780.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 355
Score = 102 bits (217), Expect(2) = 2e-027
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
+R F N E GV +P+SQPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 20 VRVFGNNEKVGVPYPQSQPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 199
Score = 40.5 bits (82), Expect(2) = 2e-027
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1 / +2
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
LD + +++WVQ KYM Y+YC D R+ P
Sbjct: 257 LDAKQRLKLKWVQEKYMTYDYCKDLARFPTAPP 355
>dbj|BD236700.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 377
Score = 106 bits (226), Expect(2) = 2e-027
Identities = 40/60 (66%), Positives = 48/60 (80%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E +GV FP+++PM +YSS+ NADDWATQGGRVKTDWSHAPF ++Y F DAC
Sbjct: 51 IRVFSNNEKRGVPFPQTRPMGVYSSIWNADDWATQGGRVKTDWSHAPFISTYTSFNIDAC 230
Score = 37.3 bits (75), Expect(2) = 2e-027
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1 / +3
Query: 307 RMRWVQRKYMIYNYCTDPKRY 369
+++WV KYMIY+YC D R+
Sbjct: 309 QLKWVHEKYMIYDYCKDSVRF 371
>gb|CO196963.1|CO196963 GEO1_3_A02.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_A02_A029 3', mRNA sequence
Length = 656
Score = 77.6 bits (163), Expect(2) = 3e-027
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +2 / +3
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKA 172
+PK+Q MR+YSSL +ADDWAT+GG VKTDW+ APF AS+ F A
Sbjct: 171 YPKNQAMRMYSSLWDADDWATRGGLVKTDWTKAPFVASFSNFSA 302
Score = 64.8 bits (135), Expect(2) = 3e-027
Identities = 21/38 (55%), Positives = 31/38 (81%)
Frame = +1 / +3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
+ LD +Q+++WV++ YMIY+YC+D KR+ QGLPAEC
Sbjct: 333 EALDSNQEQKLQWVRKNYMIYDYCSDTKRFPQGLPAEC 446
>gb|DR069381.1|DR069381 RTDK1_7_A07.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_A07_A029 3', mRNA sequence
Length = 793
Score = 99.6 bits (211), Expect(2) = 4e-027
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P +QPM++YSSL NADDWAT+GG KTDWS APF ASY+GF D C
Sbjct: 201 IRVFKNSKDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFVASYKGFHVDGC 380
Score = 42.3 bits (86), Expect(2) = 4e-027
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1 / +3
Query: 283 ELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
+LD ++++WV+ +Y IYNYCTD RY + P
Sbjct: 450 DLDGQQWRKLKWVRDRYTIYNYCTDRVRYPKMSP 551
>gb|DT630375.1|DT630375 EST1154787 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIME817, mRNA sequence
Length = 791
Score = 100 bits (214), Expect(2) = 5e-027
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+S+PM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 167 IRVFGNNEKVGVPYPQSRPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 346
Score = 40.5 bits (82), Expect(2) = 5e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +2
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 404 LDAKQRLKLKWVQEKYMTYDYCKDSARF 487
>gb|CO162167.1|CO162167 FLD1_33_C09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_C09_A029 5', mRNA sequence
Length = 789
Score = 79.0 bits (166), Expect(2) = 5e-027
Identities = 30/44 (68%), Positives = 35/44 (79%)
Frame = +2 / -1
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKA 172
FP SQ MR+YSSL NADDWAT+GG +K+DWS APF+AS F A
Sbjct: 498 FPNSQAMRIYSSLWNADDWATRGGLIKSDWSKAPFAASLSNFSA 367
Score = 62.5 bits (130), Expect(2) = 5e-027
Identities = 20/38 (52%), Positives = 29/38 (76%)
Frame = +1 / -1
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
++LD +Q+++WV+ YMIY+YC D KR+ QGLP EC
Sbjct: 336 EDLDSNQEQKLQWVRNNYMIYDYCADTKRFPQGLPPEC 223
>gb|DN632414.1|DN632414 EST983230 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACO65, mRNA sequence
Length = 769
Score = 100 bits (214), Expect(2) = 5e-027
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P+S+PM +YSS+ NADDWATQGG VKTDWSHAPF ++Y F DAC
Sbjct: 147 IRVFGNNEKVGVPYPQSRPMGVYSSIWNADDWATQGGLVKTDWSHAPFVSTYTNFSIDAC 326
Score = 40.5 bits (82), Expect(2) = 5e-027
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1 / +3
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WVQ KYM Y+YC D R+
Sbjct: 384 LDAKQRLKLKWVQEKYMTYDYCKDSARF 467
>gb|CF389002.1|CF389002 RTDR2_16_H08.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_16_H08_A021 5', mRNA
sequence
Length = 634
Score = 105 bits (225), Expect(2) = 6e-027
Identities = 40/60 (66%), Positives = 47/60 (78%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E +GV FP++ PM +YSS+ NADDWATQGGRVKTDWSHAPF ++Y F DAC
Sbjct: 2 IRVFSNNEKRGVPFPQTHPMGVYSSIWNADDWATQGGRVKTDWSHAPFISTYTSFNIDAC 181
Score = 37.3 bits (75), Expect(2) = 6e-027
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 307 RMRWVQRKYMIYNYCTDPKRY 369
+++WV KYMIY+YC D R+
Sbjct: 260 QLKWVHEKYMIYDYCKDSVRF 322
>gb|CF398188.1|CF398188 RTDS3_21_H03.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_21_H03_A022 5', mRNA sequence
Length = 451
Score = 76.7 bits (161), Expect(2) = 9e-027
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +2 / +2
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKA 172
+PKSQ MR+YSSL NA+DWAT+GG VKTDW+ APF AS+ A
Sbjct: 125 YPKSQAMRMYSSLWNAEDWATRGGLVKTDWTKAPFLASFSNISA 256
Score = 63.8 bits (133), Expect(2) = 9e-027
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1 / +2
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAECSMQ 402
LD +Q+++WV++ YMIY+YC D KR+ QGLPAEC Q
Sbjct: 293 LDSNEEQKLQWVRKNYMIYDYCADTKRFPQGLPAECK*Q 409
>gb|CX648468.1|CX648468 COLD1_28_G08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_G08_A029 5', mRNA sequence
Length = 805
Score = 76.7 bits (161), Expect(2) = 1e-026
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +2 / +1
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKA 172
+PKSQ MR+YSSL NA+DWAT+GG VKTDW+ APF AS+ A
Sbjct: 403 YPKSQAMRMYSSLWNAEDWATRGGLVKTDWTKAPFLASFSNISA 534
Score = 63.4 bits (132), Expect(2) = 1e-026
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +1 / +1
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
LD +Q+++WV++ YMIY+YC D KR+ QGLPAEC
Sbjct: 571 LDSNEEQKLQWVRKNYMIYDYCADTKRFPQGLPAEC 678
>gb|CX648384.1|CX648384 COLD1_28_G08.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_G08_A029 3', mRNA sequence
Length = 793
Score = 76.7 bits (161), Expect(2) = 1e-026
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +2 / +2
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKA 172
+PKSQ MR+YSSL NA+DWAT+GG VKTDW+ APF AS+ A
Sbjct: 293 YPKSQAMRMYSSLWNAEDWATRGGLVKTDWTKAPFLASFSNISA 424
Score = 63.4 bits (132), Expect(2) = 1e-026
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +1 / +2
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
LD +Q+++WV++ YMIY+YC D KR+ QGLPAEC
Sbjct: 461 LDSNEEQKLQWVRKNYMIYDYCADTKRFPQGLPAEC 568
>gb|CX712674.1|CX712674 RTPQ1_4_B01.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_B01_A032 3', mRNA sequence
Length = 755
Score = 97.3 bits (206), Expect(2) = 1e-026
Identities = 36/55 (65%), Positives = 44/55 (80%)
Frame = +2 / +1
Query: 17 NLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
N E +GV FP+++ M +YSS+ NADDWATQGGRVKTDWSHAPF ++Y F DAC
Sbjct: 1 NNEKRGVPFPQTRXMGVYSSIWNADDWATQGGRVKTDWSHAPFISTYTSFNIDAC 165
Score = 42.8 bits (87), Expect(2) = 1e-026
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1 / +1
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
L+ + +++WVQ+KYMIYNYC D R+
Sbjct: 223 LNAKQRMQVKWVQQKYMIYNYCKDTVRF 306
>gb|CF398098.1|CF398098 RTDS3_21_H03.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_21_H03_A022 3', mRNA sequence
Length = 532
Score = 76.7 bits (161), Expect(2) = 1e-026
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +2 / +1
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKA 172
+PKSQ MR+YSSL NA+DWAT+GG VKTDW+ APF AS+ A
Sbjct: 82 YPKSQAMRMYSSLWNAEDWATRGGLVKTDWTKAPFLASFSNISA 213
Score = 63.4 bits (132), Expect(2) = 1e-026
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +1 / +1
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
LD +Q+++WV++ YMIY+YC D KR+ QGLPAEC
Sbjct: 250 LDSNEEQKLQWVRKNYMIYDYCADTKRFPQGLPAEC 357
>dbj|BD236713.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 440
Score = 103 bits (219), Expect(2) = 2e-026
Identities = 38/59 (64%), Positives = 47/59 (79%)
Frame = +2 / +3
Query: 5 RDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
R F N E +GV +P++QPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y+ F DAC
Sbjct: 30 RIFSNNEKRGVPYPETQPMGVYSSIWNADDWATQGGLVKTDWSHAPFISTYKNFSIDAC 206
Score = 36.3 bits (73), Expect(2) = 2e-026
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1 / +3
Query: 286 LDLTLQQRMRWVQRKYMIYNYCTDPKRY 369
LD + +++WV KYM Y+YC D R+
Sbjct: 264 LDGKQRLKLKWVHEKYMTYDYCKDSVRF 347
>gb|CF476169.1|CF476169 RTWW2_21_A09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_21_A09_A021 5', mRNA sequence
Length = 734
Score = 103 bits (219), Expect(2) = 3e-026
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E GV +P++QPM +YSS+ NADDWATQGG VKTDWSHAPF ++Y+ F DAC
Sbjct: 430 IRVFANNEKVGVPYPQTQPMGVYSSIWNADDWATQGGLVKTDWSHAPFISTYKNFSIDAC 609
Score = 35.4 bits (71), Expect(2) = 3e-026
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1 / +1
Query: 286 LDLTLQQRMRWVQRKYMIYNYC 351
LD + +++WVQ KYM Y+YC
Sbjct: 667 LDAKQRLKLKWVQEKYMTYDYC 732
>gb|CF391325.1|CF391325 RTDR3_1_G03.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G03_A022 3', mRNA
sequence
Length = 603
Score = 103 bits (219), Expect(2) = 3e-026
Identities = 38/60 (63%), Positives = 47/60 (78%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F N E +GV FP+++PM +YSS+ N D WATQGGRVKTDWSHAPF ++Y+ F DAC
Sbjct: 201 IRVFSNNEKRGVPFPQTRPMGIYSSIWNGDGWATQGGRVKTDWSHAPFISTYKNFNIDAC 380
Score = 37.3 bits (75), Expect(2) = 3e-026
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1 / +3
Query: 307 RMRWVQRKYMIYNYCTDPKRY 369
+++WV+ KYMIY+YC D R+
Sbjct: 459 QVKWVREKYMIYDYCKDSVRF 521
>gb|AL750622.1|AL750622 AL750622 RN Pinus pinaster cDNA clone RN05E07 similar to XYLOGLUCAN
ENDOTRANSGLYCOSYLASE, mRNA sequence
Length = 611
Score = 84.0 bits (177), Expect(2) = 4e-026
Identities = 32/46 (69%), Positives = 38/46 (82%)
Frame = +2 / +1
Query: 41 FPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADA 178
+PK+Q MR+YSSL NADDWAT+GG VKTDW+ APF AS+R F A A
Sbjct: 121 YPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFNASA 258
Score = 56.5 bits (117), Expect(2) = 4e-026
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +1 / +1
Query: 301 QQRMRWVQRKYMIYNYCTDPKRYQQGLPAEC 393
+QR++WV++ YMIY+YC D KR+ QG P EC
Sbjct: 316 RQRLQWVRKNYMIYDYCADTKRFPQGPPPEC 408
>gb|DR014494.1|DR014494 HEAT1_49_G08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_49_G08_A029 5', mRNA sequence
Length = 947
Score = 97.7 bits (207), Expect(2) = 4e-026
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / +2
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P +QPM++YSSL NADDWAT+GG KTDW+ APF ASYR F DAC
Sbjct: 545 IRVFKNSKDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWAKAPFIASYREFHVDAC 724
Score = 40.5 bits (82), Expect(2) = 4e-026
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1 / +2
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
++LD + ++WV++ Y IYNYCTD R +Q P
Sbjct: 791 RDLDGRQWRYLKWVRKHYTIYNYCTDTPRNKQMPP 895
>gb|CO201770.1|CO201770 RTCNT2_8_B11.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_8_B11_A029 3', mRNA sequence
Length = 880
Score = 97.7 bits (207), Expect(2) = 4e-026
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / -1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P +QPM++YSSL NADDWAT+GG KTDW+ APF ASYR F DAC
Sbjct: 472 IRVFKNSKDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWAKAPFIASYREFHVDAC 293
Score = 40.5 bits (82), Expect(2) = 4e-026
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1 / -1
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
++LD + ++WV++ Y IYNYCTD R +Q P
Sbjct: 226 RDLDGRQWRYLKWVRKHYTIYNYCTDTPRNKQMPP 122
>gb|DR744308.1|DR744308 RTCU1_21_D04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_D04_A029 5', mRNA sequence
Length = 834
Score = 97.7 bits (207), Expect(2) = 4e-026
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / -1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P +QPM++YSSL NADDWAT+GG KTDW+ APF ASYR F DAC
Sbjct: 573 IRVFKNSKDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWAKAPFIASYREFHVDAC 394
Score = 40.5 bits (82), Expect(2) = 4e-026
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1 / -1
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
++LD + ++WV++ Y IYNYCTD R +Q P
Sbjct: 327 RDLDGRQWRYLKWVRKHYTIYNYCTDTPRNKQMPP 223
>gb|CO367098.1|CO367098 RTK1_32_D07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_D07_A029 3', mRNA sequence
Length = 811
Score = 97.7 bits (207), Expect(2) = 4e-026
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P +QPM++YSSL NADDWAT+GG KTDW+ APF ASYR F DAC
Sbjct: 300 IRVFKNSKDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWAKAPFIASYREFHVDAC 479
Score = 40.5 bits (82), Expect(2) = 4e-026
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1 / +3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
++LD + ++WV++ Y IYNYCTD R +Q P
Sbjct: 546 RDLDGRQWRYLKWVRKHYTIYNYCTDTPRNKQMPP 650
>gb|CF400432.1|CF400432 RTWW1_5_B03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_B03_A015 5', mRNA sequence
Length = 803
Score = 97.7 bits (207), Expect(2) = 4e-026
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / +3
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P +QPM++YSSL NADDWAT+GG KTDW+ APF ASYR F DAC
Sbjct: 378 IRVFKNSKDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWAKAPFIASYREFHVDAC 557
Score = 40.5 bits (82), Expect(2) = 4e-026
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1 / +3
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
++LD + ++WV++ Y IYNYCTD R +Q P
Sbjct: 624 RDLDGRQWRYLKWVRKHYTIYNYCTDTPRNKQMPP 728
>gb|DR014413.1|DR014413 HEAT1_49_G08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_49_G08_A029 3', mRNA sequence
Length = 798
Score = 97.7 bits (207), Expect(2) = 4e-026
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / +1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P +QPM++YSSL NADDWAT+GG KTDW+ APF ASYR F DAC
Sbjct: 208 IRVFKNSKDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWAKAPFIASYREFHVDAC 387
Score = 40.5 bits (82), Expect(2) = 4e-026
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1 / +1
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
++LD + ++WV++ Y IYNYCTD R +Q P
Sbjct: 454 RDLDGRQWRYLKWVRKHYTIYNYCTDTPRNKQMPP 558
>gb|CO362008.1|CO362008 NDL2_8_B10.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_B10_A029 5', mRNA sequence
Length = 788
Score = 97.7 bits (207), Expect(2) = 4e-026
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2 / -1
Query: 2 IRDFRNLESKGVAFPKSQPMRLYSSLLNADDWATQGGRVKTDWSHAPFSASYRGFKADAC 181
IR F+N + GV +P +QPM++YSSL NADDWAT+GG KTDW+ APF ASYR F DAC
Sbjct: 488 IRVFKNSKDLGVRYPFNQPMKIYSSLWNADDWATRGGLEKTDWAKAPFIASYREFHVDAC 309
Score = 40.5 bits (82), Expect(2) = 4e-026
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1 / -1
Query: 280 QELDLTLQQRMRWVQRKYMIYNYCTDPKRYQQGLP 384
++LD + ++WV++ Y IYNYCTD R +Q P
Sbjct: 242 RDLDGRQWRYLKWVRKHYTIYNYCTDTPRNKQMPP 138
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 293,136,892
Number of Sequences: 355925
Number of extensions: 3786739
Number of successful extensions: 32575
Number of sequences better than 1.0e-020: 329
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11538376030
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)