TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404820.2.1
(830 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library P... 212 8e-071
gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed... 214 6e-068
gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch... 171 2e-044
gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pin... 160 4e-043
gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus adde... 160 1e-042
gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus ni... 171 4e-042
gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compr... 166 2e-040
gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clon... 165 3e-040
gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pin... 161 4e-039
gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pin... 161 4e-039
gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clon... 159 2e-038
gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pin... 152 3e-036
gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magn... 115 1e-035
gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magn... 115 2e-035
gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus adde... 143 1e-033
gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus adde... 141 5e-033
gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side ... 138 7e-032
gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed... 130 1e-029
gb|BF049746.1|BF049746 NXCI_106_F09_F NXCI (Nsf Xylem Compr... 127 1e-028
gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus ni... 117 8e-026
gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pin... 111 2e-025
gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pin... 111 9e-024
gb|AW011545.1|AW011545 ST22A12 Pine TriplEx shoot tip libra... 99 1e-023
gb|CD021034.1|CD021034 NXNV_126_G03_F Nsf Xylem Normal wood... 100 1e-020
>gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 675
Score = 212 bits (458), Expect = 2e-054
Identities = 103/204 (50%), Positives = 126/204 (61%)
Frame = +3 / -2
Query: 150 PPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PRASALTDPHSPI 329
P RIREIC+PLLKA L S WNS+T GNQA A G + P+M S*PRA A T+P +P+
Sbjct: 671 PARIREICKPLLKA*LKSKRVWNSDTKGNQANTATGAKSKSPIMNS*PRARARTEPQNPM 492
Query: 330 CEIADLIVCAIRSKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMNISPLISRNTSW 509
L VCAI + HPVGMNAR+ S TVMC + + +N + PL SRNTS
Sbjct: 491 RCTKGLQVCAICNMAHPVGMNARIHANKSLTVMCKTR*RTIRTAMNPIKRRPLRSRNTS* 312
Query: 510 NSALNFLLPTDTVFITSKMTKIMTHEMX*TRTLFV*VVMFK**TRPYW*IKKRNESTISR 689
SALN LLP +T+F T K T + +H+ T TL V+F+**T PYW* K + IS+
Sbjct: 311 KSALNLLLPIETIFNTVKTTTMTSHDSPYTSTLLCVPVIFR**TNPYW*RKNLRDKRISQ 132
Query: 690 TVPRFPECLRXSCSFSHHDXXLFS 761
+ PR P LR SCSFSH D L S
Sbjct: 131 SCPRKPVYLRCSCSFSHQDSQLLS 60
Score = 179 bits (385), Expect(3) = 8e-071
Identities = 71/94 (75%), Positives = 80/94 (85%)
Frame = -2 / +1
Query: 430 HMTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPI 251
HMTV+D+F CILAFMPTGW +L IAQT + + +G WGSV+ALARGYE IMGLLLF P+
Sbjct: 391 HMTVRDLFACILAFMPTGWAILQIAQTCKPFVHRIGFWGSVRALARGYEFIMGLLLFAPV 570
Query: 250 AFLAWFPFVSEFQPRMLFNQAFSRGLQISRILGG 149
A LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G
Sbjct: 571 AVLAWFPFVSEFQTRLLFNQAFSRGLQISRILAG 672
Score = 86.8 bits (183), Expect(3) = 8e-071
Identities = 34/52 (65%), Positives = 41/52 (78%)
Frame = -2 / +1
Query: 760 EKXXXSWWEKEQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLNITTHTKS 605
+K SWWEKE E L+++G RG + EI+LSLRFF+YQYGLVYHLNIT KS
Sbjct: 61 DKSWESWWEKEHEHLKYTGLRGQLCEILLSLRFFLYQYGLVYHLNITGTHKS 216
Score = 73.0 bits (153), Expect(2) = 5e-021
Identities = 39/116 (33%), Positives = 65/116 (56%)
Frame = +2 / -1
Query: 353 LCYQKQTPSSWHERKDANKDVLNCHVWDCYQDYDNRDKRYEYQPLDQPEHKLELCTEFPP 532
LC + PSS HE K+ K V +CHV D ++ N + + + L + EHKL++CT+ P
Sbjct: 468 LCNLQYGPSSGHECKNTCKQVSHCHV*DKVKNN*NCYESNKKKALKKSEHKLKICTKPSP 289
Query: 533 AN*YSLHHEQNDKDYDPRDAXNQNALRVSGDVQMINKTILVNKEAQRKHYFKNSAT 700
++ +L + N+ P + Q+ D+QMIN++ILV +E++R F +T
Sbjct: 288 SHRNNLQYR*NNNYDKP**SIYQHTFMCPRDIQMINQSILVKEESKR*KNFTKLST 121
Score = 60.2 bits (125), Expect(4) = 7e-021
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = -1 / +3
Query: 431 THDSSGHLCLHPCVHANWMGFASDSTNYEVSYFTYGAMGIGQGACPRL*DHHG 273
THDS +C++ C+HA+WMG +D TN + ++ +G+ G+C L* H+G
Sbjct: 390 THDSERLVCMYSCIHAHWMGHIADCTNLQAFCTSHWILGLCSGSCTGL*IHNG 548
Score = 48.3 bits (99), Expect(2) = 5e-021
Identities = 22/54 (40%), Positives = 36/54 (66%)
Frame = +2 / -1
Query: 158 DTRNLQTSTEGLVEQHPWLELRNKREPSEECDRGEQQQAHDDLIASGKRLDRSP 319
+T NLQT TEGL+E+ LE R + +PS+ + ++Q++H + IA K +R+P
Sbjct: 663 NT*NLQTPTEGLIEKQTSLEFRYEGKPSQYSNWCKKQESHYEFIAPCKSPNRAP 502
Score = 40.9 bits (83), Expect(3) = 8e-071
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = -2 / +1
Query: 553 MKTVSVGRRKFSAEFQLVFRL 491
+K VS+GRR+FSA+FQLVFRL
Sbjct: 268 LKIVSMGRRRFSADFQLVFRL 330
Score = 33.6 bits (67), Expect(4) = 7e-021
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1 / +3
Query: 569 CHFARDEDCISWQEEIQCRVPACVPADQGADIHNVY 462
C F EDC +E++ CR ACVP G + ++
Sbjct: 252 CCFNGIEDCFYGKEKV*CRFSACVPTS*GPSFYWIH 359
Score = 31.3 bits (62), Expect(4) = 7e-021
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -3 / +2
Query: 756 KXXSHGGKKSRXXLGILESVALFLK*CFRCASLFTSMVLFII*TSPLTRRAFWF 595
K + GGK+S L I V F+K + S FT+M FII* S + W+
Sbjct: 65 KVGNLGGKRSMNTLSIQVYVDNFVKFFYLLDSSFTNMDWFII*ISRGHIKVCWY 226
Score = 29.9 bits (59), Expect(4) = 7e-021
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1 / +3
Query: 239 LVPVCFGVPAKDAVQPGLQ*RSADFSY 159
LV + G+P A Q GLQ* ADF+Y
Sbjct: 582 LVSLRIGIPNSFAFQSGLQ*GFADFTY 662
>gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_G03_A022 5', mRNA sequence
Length = 773
Score = 214 bits (461), Expect = 8e-055
Identities = 110/220 (50%), Positives = 132/220 (60%)
Frame = +3 / -3
Query: 96 HAASATHSLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKP 275
H ++A +S+ +SF P RIREIC PLLKA L S WNS+TNGNQA A GV + P
Sbjct: 663 HDSAAYYSVLVEDQSFFLPARIREICSPLLKA*LKSKRVWNSDTNGNQANIATGVKSRSP 484
Query: 276 MMIS*PRASALTDPHSPICEIADLIVCAIRSKPHPVGMNARMQTKMS*TVMCGIAIKIMI 455
++ S*PRA TD +P+ L CAI SK HPVGMNAR S TV ++IM
Sbjct: 483 IIYS*PRARERTDSKNPVRLYRGLHACAICSKAHPVGMNARKHANKSATVKPQTTMRIMR 304
Query: 456 IEINVMNISPLISRNTSWNSALNFLLPTDTVFITSKMTKIMTHEMX*TRTLFV*VVMFK* 635
E+ MN SP SRN S SALNF LP TVF T K + + TRTL + VMF+*
Sbjct: 303 TEMKPMNRSPFRSRNMS**SALNFCLPIATVFNTPKTIAMTNQDSPYTRTLLLSCVMFR* 124
Query: 636 *TRPYW*IKKRNESTISRTVPRFPECLRXSCSFSHHDXXL 755
*T PYW* K +++ IS+ PR PE LR SCS SH D L
Sbjct: 123 *TIPYW*RKNLSDNKISQIRPRKPEYLRCSCSSSHQDSQL 4
Score = 171 bits (369), Expect(3) = 6e-068
Identities = 73/107 (68%), Positives = 83/107 (77%)
Frame = -2 / +2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+TV D+F C LAFMPTGW LL IAQ R + G SV++LARGYE IMGLLLFTP+A
Sbjct: 332 LTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVA 511
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDRAARNKE*VA 107
LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G KKD ++ + E* A
Sbjct: 512 ILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE*YA 652
Score = 107 bits (228), Expect(2) = 3e-027
Identities = 50/131 (38%), Positives = 72/131 (54%)
Frame = -1 / +1
Query: 551 EDCISWQEEIQCRVPACVPADQGADIHNVYLYYHNLDSNPTHDSSGHLCLHPCVHANWMG 372
EDC + E+QCR+ A VPA +GA IH + H S + S +C+ PC+HA WMG
Sbjct: 208 EDCCDGEAEVQCRLSAHVPASEGASIHWFHFCSHYSHSCLRLNCSRLVCMFPCIHAYWMG 387
Query: 371 FASDSTNYEVSYFTYGAMGIGQGACPRL*DHHGLAVVHPDRIPRLVPVCFGVPAKDAVQP 192
A+D T+ + S + G+ C L* ++G + LV +C VP A+Q
Sbjct: 388 LAADCTSMQASIQPHWIFGVCSFPCSWL*IYNGTPTFYTSCYIGLVSICI*VPDPFALQS 567
Query: 191 GLQ*RSADFSY 159
GLQ*R+A+F+Y
Sbjct: 568 GLQ*RAANFTY 600
Score = 86.3 bits (182), Expect(3) = 6e-068
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = -2 / +2
Query: 757 KXXXSWWEKEQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLNITTHTKS 605
K SWW+ EQE L++SG RG + EI+LSLRFF+YQYG+VYHLNIT KS
Sbjct: 2 KSWESWWDDEQEHLKYSGLRGRIWEILLSLRFFLYQYGIVYHLNITHDNKS 154
Score = 82.2 bits (173), Expect(2) = 9e-024
Identities = 42/109 (38%), Positives = 64/109 (58%)
Frame = +2 / -2
Query: 344 PHSLCYQKQTPSSWHERKDANKDVLNCHVWDCYQDYDNRDKRYEYQPLDQPEHKLELCTE 523
P LC +Q PSS HE K+ K V D Y++ +NR++ E +PL +PEH+L +CTE
Sbjct: 415 PACLCNLQQGPSSRHECKETCKQVCYS*AADNYENNENRNETNE*KPLQKPEHELIICTE 236
Query: 524 FPPAN*YSLHHEQNDKDYDPRDAXNQNALRVSGDVQMINKTILVNKEAQ 670
P + SL + N+ + PR + QN V DV +IN +ILV ++++
Sbjct: 235 LLPPHRNSLQYP*NNCNDKPR*SIYQNTFVVMCDV*VINNSILVEEKSK 89
Score = 48.3 bits (99), Expect(2) = 9e-024
Identities = 23/60 (38%), Positives = 38/60 (63%)
Frame = +2 / -2
Query: 134 PVFLVSA*DTRNLQTSTEGLVEQHPWLELRNKREPSEECDRGEQQQAHDDLIASGKRLDR 313
P+F ++ +T NLQ STEGL+E+ LELR K +PS+ + ++ ++H I + K +R
Sbjct: 625 PIFFPTSKNT*NLQPSTEGLIEEQTGLELRYKWKPSQYSNWCKK*ESHYIFITTSKGTNR 446
Score = 39.1 bits (79), Expect(3) = 6e-068
Identities = 14/21 (66%), Positives = 21/21 (100%)
Frame = -2 / +2
Query: 553 MKTVSVGRRKFSAEFQLVFRL 491
+KTV++GR+KFSA++QL+FRL
Sbjct: 206 LKTVAMGRQKFSADYQLMFRL 268
Score = 35.0 bits (70), Expect(2) = 3e-027
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -3 / +3
Query: 747 SHGGKKSRXXLGILESVALFLK*CFRCASLFTSMVLFII*TSPLTRRAFWF 595
S GG +R I F K C+ T+M LFI *TS +T + FW+
Sbjct: 12 SPGGMTNRSISSIQACGDGFGKSCYHLDFSSTNMELFIT*TSHMTTKVFWY 164
>gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_39_G06_A034 5', mRNA sequence
Length = 683
Score = 171 bits (369), Expect(2) = 2e-044
Identities = 73/107 (68%), Positives = 83/107 (77%)
Frame = -2 / -2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+TV D+F C LAFMPTGW LL IAQ R + G SV++LARGYE IMGLLLFTP+A
Sbjct: 577 LTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVA 398
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDRAARNKE*VA 107
LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G KKD ++ + E* A
Sbjct: 397 ILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE*YA 257
Score = 146 bits (313), Expect = 2e-034
Identities = 74/146 (50%), Positives = 88/146 (60%)
Frame = +3 / +3
Query: 96 HAASATHSLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKP 275
H ++A +S+ +SF P RIREIC PLLKA L S WNS+TNGNQA A GV + P
Sbjct: 246 HDSAAYYSVLVEDQSFFLPARIREICNPLLKA*LKSKRVWNSDTNGNQANIATGVKSRSP 425
Query: 276 MMIS*PRASALTDPHSPICEIADLIVCAIRSKPHPVGMNARMQTKMS*TVMCGIAIKIMI 455
++ S*PRA TD +P+ L CAI SK HPVGMNAR S TV ++IM
Sbjct: 426 IIYS*PRARERTDSKNPVRLYRGLHACAICSKAHPVGMNARKHANKSATVKPQTTMRIMR 605
Query: 456 IEINVMNISPLISRNTSWNSALNFLL 533
E+ MN SP SRN S SALNF L
Sbjct: 606 TEMKPMNRSPFRSRNMS**SALNFCL 683
Score = 28.1 bits (55), Expect(2) = 2e-044
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = -2 / -2
Query: 532 RRKFSAEFQLVFRL 491
R+KFSA++QL+FRL
Sbjct: 682 RQKFSADYQLMFRL 641
>gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 3', mRNA sequence
Length = 769
Score = 160 bits (344), Expect(2) = 4e-043
Identities = 63/95 (66%), Positives = 72/95 (75%)
Frame = -2 / +1
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+T+ D+F C LAFMPTGW L IA R + G W SV+ALAR Y+ +MGL+LFTP+A
Sbjct: 115 LTISDLFACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVA 294
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHK 143
LAWFPFVSEFQ R LFNQAFSRGLQISRIL G K
Sbjct: 295 ILAWFPFVSEFQTRFLFNQAFSRGLQISRILAGRK 399
Score = 116 bits (249), Expect = 1e-025
Identities = 61/132 (46%), Positives = 73/132 (55%)
Frame = +3 / -3
Query: 141 FLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PRASALTDPH 320
+ P RIREIC+PLL AWL WNS+TNGNQA A GV ++ P+ S* RA A T+
Sbjct: 401 YFLPARIREICKPLLNAWLKRKRVWNSDTNGNQANIATGVKSTSPIT*S*LRARARTESQ 222
Query: 321 SPICEIADLIVCAIRSKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMNISPLISRN 500
+P L AI K HPVGMNAR S V ++I+ + M SP SRN
Sbjct: 221 NPARCNRGLQASAICRKAHPVGMNARKHANKSDMVKPQTTMRIVRTDKKPMKRSPFRSRN 42
Query: 501 TSWNSALNFLLP 536
S SALN LP
Sbjct: 41 MS*KSALNLRLP 6
Score = 35.0 bits (70), Expect(2) = 4e-043
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = -2 / +1
Query: 541 SVGRRKFSAEFQLVFRL 491
S+GRR+FSA+FQL+FRL
Sbjct: 1 SMGRRRFSADFQLMFRL 51
>gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 5', mRNA sequence
Length = 804
Score = 160 bits (344), Expect(2) = 1e-042
Identities = 63/95 (66%), Positives = 72/95 (75%)
Frame = -2 / +1
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+T+ D+F C LAFMPTGW L IA R + G W SV+ALAR Y+ +MGL+LFTP+A
Sbjct: 112 LTISDLFACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVA 291
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHK 143
LAWFPFVSEFQ R LFNQAFSRGLQISRIL G K
Sbjct: 292 ILAWFPFVSEFQTRFLFNQAFSRGLQISRILAGRK 396
Score = 116 bits (249), Expect = 1e-025
Identities = 61/132 (46%), Positives = 73/132 (55%)
Frame = +3 / -2
Query: 141 FLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PRASALTDPH 320
+ P RIREIC+PLL AWL WNS+TNGNQA A GV ++ P+ S* RA A T+
Sbjct: 398 YFLPARIREICKPLLNAWLKRKRVWNSDTNGNQANIATGVKSTSPIT*S*LRARARTESQ 219
Query: 321 SPICEIADLIVCAIRSKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMNISPLISRN 500
+P L AI K HPVGMNAR S V ++I+ + M SP SRN
Sbjct: 218 NPARCNRGLQASAICRKAHPVGMNARKHANKSDMVKPQTTMRIVRTDKKPMKRSPFRSRN 39
Query: 501 TSWNSALNFLLP 536
S SALN LP
Sbjct: 38 MS*KSALNLRLP 3
Score = 33.1 bits (66), Expect(2) = 1e-042
Identities = 12/16 (75%), Positives = 16/16 (100%)
Frame = -2 / +1
Query: 538 VGRRKFSAEFQLVFRL 491
+GRR+FSA+FQL+FRL
Sbjct: 1 MGRRRFSADFQLMFRL 48
>gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_28_H03_A029 3', mRNA sequence
Length = 692
Score = 171 bits (369), Expect = 4e-042
Identities = 73/107 (68%), Positives = 83/107 (77%)
Frame = -2 / +2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+TV D+F C LAFMPTGW LL IAQ R + G SV++LARGYE IMGLLLFTP+A
Sbjct: 5 LTVADLFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVA 184
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKDRAARNKE*VA 107
LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G KKD ++ + E* A
Sbjct: 185 ILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE*YA 325
Score = 119 bits (254), Expect = 3e-026
Identities = 57/110 (51%), Positives = 68/110 (61%)
Frame = +3 / -3
Query: 96 HAASATHSLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKP 275
H ++A +S+ +SF P RIREIC PLLKA L S WNS+TNGNQA A GV + P
Sbjct: 336 HDSAAYYSVLVEDQSFFLPARIREICSPLLKA*LKSKRVWNSDTNGNQANIATGVKSRSP 157
Query: 276 MMIS*PRASALTDPHSPICEIADLIVCAIRSKPHPVGMNARMQTKMS*TV 425
++ S*PRA TD +P+ L CAI SK HPVGMNAR S TV
Sbjct: 156 IIYS*PRARERTDSKNPVRLYRGLHACAICSKAHPVGMNARKHANKSATV 7
>gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_162_C02 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 381
Score = 166 bits (357), Expect = 2e-040
Identities = 68/96 (70%), Positives = 79/96 (82%)
Frame = -2 / +1
Query: 397 LAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSE 218
LAFMPTGW +L IAQT +S + +G WGSV+ALARGYE IMGLLLF PIA LAWFPFVSE
Sbjct: 1 LAFMPTGWAILQIAQTCKSFVHRIGFWGSVRALARGYEFIMGLLLFAPIAVLAWFPFVSE 180
Query: 217 FQPRMLFNQAFSRGLQISRILGGHKKDRAARNKE*V 110
FQ R+LFNQ F GLQISRIL G KKD ++++KE*+
Sbjct: 181 FQTRLLFNQXFXXGLQISRILAGRKKDWSSKSKE*M 288
Score = 116 bits (247), Expect = 3e-025
Identities = 53/103 (51%), Positives = 64/103 (62%)
Frame = +3 / -2
Query: 87 YQAHAASATHSLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNN 266
Y+ + HSL +SF P RIREIC+P LK L S WNS+T GNQA AIG +
Sbjct: 311 YRERSIIRIHSLLLEDQSFFRPARIREICKPXLKX*LKSKRVWNSDTKGNQANTAIGAKS 132
Query: 267 SKPMMIS*PRASALTDPHSPICEIADLIVCAIRSKPHPVGMNA 395
P+M S*PRA A T+P +P+ DL VCAI + HPVGMNA
Sbjct: 131 KSPIMNS*PRARARTEPQNPMRCTKDLQVCAICNMAHPVGMNA 3
>gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clone RS15C01, mRNA sequence
Length = 488
Score = 165 bits (355), Expect = 3e-040
Identities = 65/95 (68%), Positives = 73/95 (76%)
Frame = -2 / +2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+T+ D+F C LAFMPTGW L IA R + H G W SV+ALAR Y+ +MGLLLFTP+A
Sbjct: 86 LTISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPVA 265
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHK 143
LAWFPFVSEFQ R LFNQAFSRGLQISRIL G K
Sbjct: 266 ILAWFPFVSEFQTRFLFNQAFSRGLQISRILAGRK 370
Score = 106 bits (227), Expect = 2e-022
Identities = 54/119 (45%), Positives = 65/119 (54%)
Frame = +3 / -3
Query: 141 FLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PRASALTDPH 320
+ P RIREIC+PLL AWL WNS+TNGNQA A GV + P+ S* RA A T+
Sbjct: 372 YFLPARIREICKPLLNAWLKRKRVWNSDTNGNQANIATGVKSRSPIT*S*LRARARTESQ 193
Query: 321 SPICEIADLIVCAIRSKPHPVGMNARMQTKMS*TVMCGIAIKIMIIEINVMNISPLISR 497
+P C L AI K HPVGMNAR S V ++I+ + M SP SR
Sbjct: 192 NPACCNRGLQASAICRKAHPVGMNARKHANKSDMVKPQTTMRIIRTDKKPMKRSPFRSR 16
>gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 3', mRNA sequence
Length = 820
Score = 161 bits (347), Expect = 4e-039
Identities = 67/97 (69%), Positives = 74/97 (76%)
Frame = -2 / +3
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+T+ D+FVC LAFMPTGW L IA R GLW SV+ALAR YE +MGL LFTP+A
Sbjct: 45 LTIADLFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSYEYVMGLHLFTPVA 224
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKD 137
LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G K D
Sbjct: 225 ILAWFPFVSEFQSRLLFNQAFSRGLQISRILTGRK*D 335
Score = 108 bits (231), Expect = 4e-023
Identities = 55/112 (49%), Positives = 64/112 (57%)
Frame = +3 / -1
Query: 117 SLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PR 296
+L +S+ P RIREIC+PLLKAWL S WNS+TNGNQA A GV P+ S* R
Sbjct: 355 TLLIEGQSYFLPVRIREICKPLLKAWLKSKRLWNSDTNGNQANIATGVKRWSPITYS*LR 176
Query: 297 ASALTDPHSPICEIADLIVCAIRSKPHPVGMNARMQTKMS*TVMCGIAIKIM 452
A A T+ SP L AI K HPVGMNAR T S V ++IM
Sbjct: 175 ARARTESQSPQHSNRGLQASAICRKAHPVGMNARKHTNKSAMVKPKTTMRIM 20
>gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 5', mRNA sequence
Length = 501
Score = 161 bits (347), Expect = 4e-039
Identities = 67/97 (69%), Positives = 74/97 (76%)
Frame = -2 / +2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+T+ D+FVC LAFMPTGW L IA R GLW SV+ALAR YE +MGL LFTP+A
Sbjct: 53 LTIADLFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSYEYVMGLHLFTPVA 232
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHKKD 137
LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G K D
Sbjct: 233 ILAWFPFVSEFQSRLLFNQAFSRGLQISRILTGRK*D 343
Score = 108 bits (231), Expect = 4e-023
Identities = 55/112 (49%), Positives = 64/112 (57%)
Frame = +3 / -1
Query: 117 SLFRAARSFLCPPRIREICRPLLKAWLNSILGWNSETNGNQARNAIGVNNSKPMMIS*PR 296
+L +S+ P RIREIC+PLLKAWL S WNS+TNGNQA A GV P+ S* R
Sbjct: 363 TLLIEGQSYFLPVRIREICKPLLKAWLKSKRLWNSDTNGNQANIATGVKRWSPITYS*LR 184
Query: 297 ASALTDPHSPICEIADLIVCAIRSKPHPVGMNARMQTKMS*TVMCGIAIKIM 452
A A T+ SP L AI K HPVGMNAR T S V ++IM
Sbjct: 183 ARARTESQSPQHSNRGLQASAICRKAHPVGMNARKHTNKSAMVKPKTTMRIM 28
>gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clone RS11G06, mRNA sequence
Length = 551
Score = 159 bits (342), Expect = 2e-038
Identities = 63/95 (66%), Positives = 71/95 (74%)
Frame = -2 / +3
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+T+ D+F C LAFMPTGW L IA R + H G W SV+ALAR Y+ +MGLLLFTP+A
Sbjct: 78 LTISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPVA 257
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHK 143
LAWFPFVSEFQ R LFNQAFSRGL SRIL G K
Sbjct: 258 ILAWFPFVSEFQTRFLFNQAFSRGLXNSRILAGRK 362
>gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 3', mRNA sequence
Length = 760
Score = 152 bits (326), Expect = 3e-036
Identities = 61/89 (68%), Positives = 67/89 (75%)
Frame = -2 / +1
Query: 409 FVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFP 230
F C LAFMPTGW L IA R + G W SV+ALAR Y+ +MGL+LFTP+A LAWFP
Sbjct: 1 FACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFP 180
Query: 229 FVSEFQPRMLFNQAFSRGLQISRILGGHK 143
FVSEFQ R LFNQAFSRGLQISRIL G K
Sbjct: 181 FVSEFQTRFLFNQAFSRGLQISRILAGRK 267
>gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 5', mRNA sequence
Length = 763
Score = 115 bits (246), Expect(2) = 1e-035
Identities = 47/91 (51%), Positives = 62/91 (68%)
Frame = -2 / +3
Query: 415 DIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAW 236
D+ +LA MPTGWGL+ IAQ +R + +W V A+AR YE+I G+++ P+A L+W
Sbjct: 471 DLITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIPVALLSW 650
Query: 235 FPFVSEFQPRMLFNQAFSRGLQISRILGGHK 143
P Q R+LFN+AFSRGLQISRIL G K
Sbjct: 651 LPGFQTLQTRILFNEAFSRGLQISRILVGKK 743
Score = 57.0 bits (118), Expect(2) = 1e-035
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = -2 / +3
Query: 742 WWEKEQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLNITTHTKS 605
WW +E + L +G G VLEI++ +RF QYG+VY L I ++KS
Sbjct: 144 WWYEEHDHLHSTGIWGKVLEILIDIRFLFLQYGIVYQLRIANNSKS 281
>gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 3', mRNA sequence
Length = 872
Score = 115 bits (246), Expect(2) = 2e-035
Identities = 47/91 (51%), Positives = 62/91 (68%)
Frame = -2 / +2
Query: 415 DIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAW 236
D+ +LA MPTGWGL+ IAQ +R + +W V A+AR YE+I G+++ P+A L+W
Sbjct: 338 DLITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIPVALLSW 517
Query: 235 FPFVSEFQPRMLFNQAFSRGLQISRILGGHK 143
P Q R+LFN+AFSRGLQISRIL G K
Sbjct: 518 LPGFQTLQTRILFNEAFSRGLQISRILVGKK 610
Score = 57.0 bits (118), Expect(2) = 2e-035
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = -2 / +2
Query: 742 WWEKEQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLNITTHTKS 605
WW +E + L +G G VLEI++ +RF QYG+VY L I ++KS
Sbjct: 11 WWYEEHDHLHSTGIWGKVLEILIDIRFLFLQYGIVYQLRIANNSKS 148
>gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 3', mRNA sequence
Length = 806
Score = 143 bits (307), Expect = 1e-033
Identities = 58/84 (69%), Positives = 64/84 (76%)
Frame = -2 / +1
Query: 394 AFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEF 215
AFMPTGW L IA R + G W SV+ALAR Y+ +MGL+LFTP+A LAWFPFVSEF
Sbjct: 1 AFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFPFVSEF 180
Query: 214 QPRMLFNQAFSRGLQISRILGGHK 143
Q R LFNQAFSRGLQISRIL G K
Sbjct: 181 QTRFLFNQAFSRGLQISRILAGRK 252
>gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_H10_A029 5', mRNA sequence
Length = 691
Score = 141 bits (303), Expect = 5e-033
Identities = 57/95 (60%), Positives = 73/95 (76%)
Frame = -2 / -2
Query: 427 MTVQDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIA 248
+TV D+F ILAF+PTGW ++ +A T +S + +GLW SV A+AR Y+ MG+LLF PI
Sbjct: 624 LTVTDLFASILAFVPTGWLIICLAITWKSVVKSLGLWKSVSAIARFYDAGMGILLFIPIV 445
Query: 247 FLAWFPFVSEFQPRMLFNQAFSRGLQISRILGGHK 143
L+WFPFVS FQ R+LFNQAFSRGL+IS IL G+K
Sbjct: 444 VLSWFPFVSTFQTRLLFNQAFSRGLEISLILAGNK 340
>gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_002_B01 5' similar to Arabidopsis thaliana
sequence At5g13000 callose synthase catalytic subunit
-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 447
Score = 138 bits (295), Expect = 7e-032
Identities = 56/73 (76%), Positives = 65/73 (89%)
Frame = -2 / +1
Query: 328 MGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQAFSRGLQISRILGG 149
+G WGSV+ALARGYE IMGLLLF P+A LAWFPFVSEFQ R+LFNQAFSRGLQISRIL G
Sbjct: 4 IGFWGSVRALARGYEFIMGLLLFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQISRILAG 183
Query: 148 HKKDRAARNKE*V 110
KKD ++++KE*+
Sbjct: 184 RKKDWSSKSKE*M 222
>gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_B01_A021 3', mRNA sequence
Length = 559
Score = 130 bits (278), Expect = 1e-029
Identities = 48/92 (52%), Positives = 69/92 (75%)
Frame = -2 / +3
Query: 418 QDIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLA 239
+D+F ILAF+PTGWG+L +A + + +GLW S+++L R Y+ MG+++F P+A +
Sbjct: 3 KDVFASILAFIPTGWGILCLAIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVALCS 182
Query: 238 WFPFVSEFQPRMLFNQAFSRGLQISRILGGHK 143
W PFVS FQ R++FNQAFSRGL+IS IL G+K
Sbjct: 183 WLPFVSTFQTRLMFNQAFSRGLEISLILAGNK 278
>gb|BF049746.1|BF049746 NXCI_106_F09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_106_F09 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 213
Score = 127 bits (271), Expect = 1e-028
Identities = 50/71 (70%), Positives = 56/71 (78%)
Frame = -2 / +1
Query: 397 LAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSE 218
LAFMPTGW +L IAQT + + +G WGSV+ALARGYE IMGLLLF P A LAWFPFVSE
Sbjct: 1 LAFMPTGWAILQIAQTCKXFVHRIGFWGSVRALARGYEFIMGLLLFAPXAVLAWFPFVSE 180
Query: 217 FQPRMLFNQAF 185
FQ R+LFN F
Sbjct: 181 FQTRLLFNXXF 213
>gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_G11_A029 3', mRNA sequence
Length = 569
Score = 117 bits (251), Expect = 8e-026
Identities = 43/84 (51%), Positives = 62/84 (73%)
Frame = -2 / +2
Query: 394 AFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAWFPFVSEF 215
AF+PTGWG+L + + + +GLW S+++L R Y+ MG+++F P+A +W PFVS F
Sbjct: 2 AFIPTGWGILCLGIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVAMCSWLPFVSTF 181
Query: 214 QPRMLFNQAFSRGLQISRILGGHK 143
Q R++FNQAFSRGL+IS IL G+K
Sbjct: 182 QTRLMFNQAFSRGLEISLILAGNK 253
>gb|DR071679.1|DR071679 RTDK1_21_A05.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 5', mRNA sequence
Length = 607
Score = 111 bits (236), Expect(2) = 2e-025
Identities = 45/90 (50%), Positives = 60/90 (66%)
Frame = -2 / +1
Query: 760 EKXXXSWWEKEQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLNITTHTKSXXXXXXXX 581
EK SWW+++Q+ L+H+G R + EI+LS RF +YQYGLVYHLNI +S
Sbjct: 229 EKSWESWWDEDQDHLKHAGLRARIFEILLSFRFLLYQYGLVYHLNIAHEHRSVLVYALSW 408
Query: 580 XXXXXXXXVMKTVSVGRRKFSAEFQLVFRL 491
V+KTVS+GRR+FSA+FQL+FRL
Sbjct: 409 VVIAIVLLVLKTVSMGRRRFSADFQLMFRL 498
Score = 25.4 bits (49), Expect(2) = 2e-025
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2 / +2
Query: 415 DIFVCILAFMP 383
D+F C LAFMP
Sbjct: 575 DLFACFLAFMP 607
>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 5', mRNA sequence
Length = 796
Score = 111 bits (236), Expect = 9e-024
Identities = 45/90 (50%), Positives = 60/90 (66%)
Frame = -2 / +3
Query: 760 EKXXXSWWEKEQEXLRHSGKRGTVLEIVLSLRFFIYQYGLVYHLNITTHTKSXXXXXXXX 581
EK SWW+++Q+ L+H+G R + EI+LS RF +YQYGLVYHLNI +S
Sbjct: 453 EKSWESWWDEDQDHLKHAGLRARIFEILLSFRFLLYQYGLVYHLNIAHEHRSVLVYALSW 632
Query: 580 XXXXXXXXVMKTVSVGRRKFSAEFQLVFRL 491
V+KTVS+GRR+FSA+FQL+FRL
Sbjct: 633 VVIAIVLLVLKTVSMGRRRFSADFQLMFRL 722
>gb|AW011545.1|AW011545 ST22A12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST22A12, mRNA sequence
Length = 578
Score = 98.7 bits (209), Expect(2) = 1e-023
Identities = 38/82 (46%), Positives = 58/82 (70%)
Frame = -2 / +3
Query: 415 DIFVCILAFMPTGWGLLLIAQTMRSAISHMGLWGSVKALARGYEIIMGLLLFTPIAFLAW 236
D+ +LAF+PTGWGL+LIAQ ++S + + +W +V A+AR YEI G+++ P+A L+W
Sbjct: 270 DLVTSLLAFVPTGWGLILIAQVLKSFLHYNIVWETVIAVARLYEITFGIIVMIPMAVLSW 449
Query: 235 FPFVSEFQPRMLFNQAFSRGLQ 170
P Q R+LFN+AF +GL+
Sbjct: 450 LPGFQATQTRILFNEAFXKGLK 515
Score = 33.1 bits (66), Expect(2) = 1e-023
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2 / +3
Query: 670 LRFFIYQYGLVYHLNITTHTKS 605
LRFF++QYG+ Y L I+ +KS
Sbjct: 15 LRFFVFQYGIGYQLGISGGSKS 80
>gb|CD021034.1|CD021034 NXNV_126_G03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_126_G03 5' similar to Arabidopsis thaliana
sequence At1g05570 putative glucan synthase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 171
Score = 100 bits (214), Expect = 1e-020
Identities = 42/55 (76%), Positives = 45/55 (81%)
Frame = -2 / +2
Query: 313 SVKALARGYEIIMGLLLFTPIAFLAWFPFVSEFQPRMLFNQAFSRGLQISRILGG 149
SV+ALARGYE IMGLLLF P+A LAWFPFVSEFQ R+LFN FS GL SRIL G
Sbjct: 2 SVRALARGYEFIMGLLLFAPVAVLAWFPFVSEFQTRLLFNXXFSXGLXXSRILAG 166
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 402,428,524
Number of Sequences: 355925
Number of extensions: 5459605
Number of successful extensions: 37458
Number of sequences better than 1.0e-020: 31
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12077552480
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)