TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.3
(1028 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus add... 174 4e-059
gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinu... 174 1e-046
gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered lo... 174 2e-046
gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus add... 174 4e-046
gb|CO157756.1|CO157756 FLD1_1_H03.g1_A029 Root flooded Pinu... 177 1e-043
gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response R... 125 4e-043
gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response R... 130 7e-043
gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side ... 172 3e-042
gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus... 124 3e-042
gb|DR100644.1|DR100644 STRR1_66_D11.b1_A033 Stem Response R... 119 2e-041
gb|BQ703142.1|BQ703142 NXSI_137_A09_F NXSI (Nsf Xylem Side ... 170 2e-041
gb|AW784002.1|AW784002 NXNV_096_G04_F Nsf Xylem Normal wood... 166 2e-040
gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo li... 122 1e-039
gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pin... 137 1e-039
gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pin... 123 9e-039
gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated wi... 127 3e-038
gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response R... 133 5e-037
gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus adde... 133 2e-036
gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control P... 133 1e-033
gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus pota... 133 1e-033
gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus ph... 133 1e-033
gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clon... 100 2e-032
gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clon... 123 8e-032
gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch... 123 8e-032
gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated wi... 127 4e-031
gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pin... 123 5e-031
gb|DR095364.1|DR095364 STRR1_20_C06.g1_A033 Stem Response R... 75 9e-031
gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus ni... 123 1e-030
gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus pota... 124 2e-030
gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus pota... 133 3e-030
gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus pota... 133 3e-030
gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus pota... 133 3e-030
gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus pota... 133 3e-030
gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch... 133 3e-030
gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch... 133 3e-030
gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus... 123 5e-030
gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side ... 131 1e-029
gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine ro... 131 1e-029
gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus pota... 131 1e-029
gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus adde... 131 1e-029
gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9... 130 1e-029
gb|CF478983.1|CF478983 RTWW3_21_F03.b1_A022 Well-watered lo... 114 1e-028
gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root w... 112 1e-028
gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch... 114 3e-027
gb|CX651789.1|CX651789 COLD1_54_G01.g1_A029 Root cold Pinus... 107 9e-027
gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus pota... 118 7e-026
gb|DR012422.1|DR012422 HEAT1_12_E12.g1_A029 Root at 37 C fo... 63 1e-025
gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine r... 101 2e-024
gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus pota... 101 3e-024
gb|CF663944.1|CF663944 RTCNT1_6_E05.b1_A029 Root control Pi... 101 5e-024
gb|DR053203.1|DR053203 RTCA1_9_D06.g1_A029 Roots minus calc... 93 7e-022
>gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 5', mRNA sequence
Length = 830
Score = 174 bits (375), Expect(3) = 4e-059
Identities = 70/112 (62%), Positives = 85/112 (75%)
Frame = +3 / +2
Query: 342 IIAQKNHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHD 521
+I + +H P NV PGT+VD ++CHP+NFDFY+C AG IGT+RPTHYH+L D
Sbjct: 380 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 559
Query: 522 EIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 677
E F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 560 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 715
Score = 105 bits (225), Expect(2) = 7e-031
Identities = 42/68 (61%), Positives = 55/68 (80%)
Frame = +3 / +2
Query: 201 KRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFI 380
+RKP Q+IIFRDGVSESQF+QVLN+ELQ I++AC +++ + PK TLI+AQKNHHTK F
Sbjct: 242 ERKPQQMIIFRDGVSESQFDQVLNVELQAILKACNDIEDGYRPKVTLIVAQKNHHTKLFP 421
Query: 381 PGKPDNVP 404
G+ + P
Sbjct: 422 TGQGNVQP 445
Score = 68.0 bits (142), Expect(3) = 4e-059
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +3 / +2
Query: 3 SPGHXXXXXXXXXXXXREWPLISKYRASVRTQSPKMEMIDSLFK 134
SPGH REWPLIS+YRASVRTQSPK+EMI++L K
Sbjct: 26 SPGHADSPSISAVVASREWPLISRYRASVRTQSPKVEMIEALHK 157
Score = 62.5 bits (130), Expect(5) = 2e-036
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = -2 / -3
Query: 121 SIISIFGDWVRTDALYFEIRGHSRELTTAATDGTSECPGD 2
SIIS GD V T+ALY +I+GHSRE TTA +G S CPG+
Sbjct: 144 SIISTLGDCVLTEALYLDIKGHSREATTAEIEGESACPGE 25
Score = 55.6 bits (115), Expect(5) = 2e-036
Identities = 29/71 (40%), Positives = 43/71 (60%)
Frame = -1 / -2
Query: 416 HSSWWDIIWLSRNEKFSVMILLGNNQRELGIPFLIKKFASLDDLLQLNVQHLIKLTFANT 237
++S W I L+ E+ VMILL NNQ G ++ L+ LQLN+Q L+KL F ++
Sbjct: 457 YNSPWLHIALTSWEQLRVMILLRNNQCNFGPITILYVITCLEYSLQLNIQDLVKLRFTDS 278
Query: 236 VPEYDNLVRLS 204
+ E D+L+ LS
Sbjct: 277 ISENDHLLWLS 245
Score = 51.5 bits (106), Expect(5) = 2e-036
Identities = 28/47 (59%), Positives = 29/47 (61%)
Frame = -2 / -3
Query: 535 LKPISSCRMW**VGLVVPIIPACAHM*KSKFFGWQTLLSTTVPGGTL 395
+K SS W**VG VPI PA H *KSKF G Q ST VPG TL
Sbjct: 573 VKLFSSSNTW**VGREVPIGPA*GHK*KSKFLG*QI*ASTIVPGCTL 433
Score = 48.7 bits (100), Expect(2) = 7e-031
Identities = 30/79 (37%), Positives = 36/79 (45%)
Frame = +1 / +3
Query: 397 MSHQELWWTTKSAIQRTSISTCVRMLE*SGLRGQLTTTSCMMR*ASVLMICRSWCIRSLM 576
M +Q L + I T ISTC L L G L T +MR + MI R W + LM
Sbjct: 435 MCNQGLL*MLRFVILETLISTCALRLAQ*ELHGLLITMYYLMRIVLLWMIFRFWSMHYLM 614
Query: 577 CTKGAQQPYQSLLPSATHI 633
C KG Q+ Y L HI
Sbjct: 615 CIKGVQRQYLQLPQ*IMHI 671
Score = 32.7 bits (65), Expect(5) = 2e-036
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -2 / -3
Query: 781 QKNIELLTFSCRRGSSWTGTLPAEVCPP*LEDVSDISSN 665
QKNI TF CR GSS T P V P L D +S +
Sbjct: 828 QKNIVWQTFWCRAGSSGTCAPPDAVDPSALPDREAVSES 712
Score = 29.9 bits (59), Expect(3) = 4e-059
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3 / +2
Query: 729 VQELPRLHEKVRSSMFFC 782
V ELP LH+ V +MFFC
Sbjct: 776 VPELPALHQNVCHTMFFC 829
Score = 23.5 bits (45), Expect(5) = 2e-036
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2 / -3
Query: 619 MGATTDMAVVLLWY 578
+GAT D+AVVLL Y
Sbjct: 657 IGATEDIAVVLL*Y 616
>gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H02_A029 5', mRNA sequence
Length = 706
Score = 174 bits (375), Expect(2) = 1e-046
Identities = 70/112 (62%), Positives = 85/112 (75%)
Frame = +3 / +2
Query: 342 IIAQKNHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHD 521
+I + +H P NV PGT+VD ++CHP+NFDFY+C AG IGT+RPTHYH+L D
Sbjct: 179 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 358
Query: 522 EIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 677
E F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 359 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 514
Score = 105 bits (225), Expect(2) = 2e-029
Identities = 42/68 (61%), Positives = 55/68 (80%)
Frame = +3 / +2
Query: 201 KRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFI 380
+RKP Q+IIFRDGVSESQF+QVLN+ELQ I++AC +++ + PK TLI+AQKNHHTK F
Sbjct: 41 ERKPQQMIIFRDGVSESQFDQVLNVELQAILKACNDIEDGYRPKVTLIVAQKNHHTKLFP 220
Query: 381 PGKPDNVP 404
G+ + P
Sbjct: 221 TGQGNVQP 244
Score = 59.3 bits (123), Expect(4) = 7e-025
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = -1 / -1
Query: 416 HSSWWDIIWLSRNEKFSVMILLGNNQRELGIPFLIKKFASLDDLLQLNVQHLIKLTFANT 237
++S W I L+ E+ VMILL NNQ G ++ L+ LQLN+Q L+KL F ++
Sbjct: 256 YNSPWLHIALTSWEQLRVMILLRNNQCNFGPITILYVITCLEYSLQLNIQDLVKLRFTDS 77
Query: 236 VPEYDNLVRLS 204
+ E D+L+RLS
Sbjct: 76 ISENDHLLRLS 44
Score = 51.5 bits (106), Expect(4) = 7e-025
Identities = 28/47 (59%), Positives = 29/47 (61%)
Frame = -2 / -2
Query: 535 LKPISSCRMW**VGLVVPIIPACAHM*KSKFFGWQTLLSTTVPGGTL 395
+K SS W**VG VPI PA H *KSKF G Q ST VPG TL
Sbjct: 372 VKLFSSSNTW**VGREVPIGPA*GHK*KSKFLG*QI*ASTIVPGCTL 232
Score = 43.7 bits (89), Expect(2) = 2e-029
Identities = 29/79 (36%), Positives = 35/79 (44%)
Frame = +1 / +3
Query: 397 MSHQELWWTTKSAIQRTSISTCVRMLE*SGLRGQLTTTSCMMR*ASVLMICRSWCIRSLM 576
M +Q L + I T ISTC L L G L T +MR + MI R W + LM
Sbjct: 234 MCNQGLL*MLRFVILETLISTCALRLAQ*ELHGLLITMYYLMRIVLLWMIFRFWSMHYLM 413
Query: 577 CTKGAQQPYQSLLPSATHI 633
KG Q+ Y L HI
Sbjct: 414 YIKGVQRQYLQLPQ*IMHI 470
Score = 35.0 bits (70), Expect(4) = 7e-025
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = -2 / -2
Query: 784 QQKNIELLTFSCRRGSSWTGTLPAEVCPP*LEDVSDISSN 665
QQKNI TF CR GSS T P V P L D +S +
Sbjct: 630 QQKNIVWQTFWCRAGSSGTCAPPDAVDPSALPDREAVSES 511
Score = 33.1 bits (66), Expect(2) = 1e-046
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3 / +2
Query: 729 VQELPRLHEKVRSSMFFC*AVVLLFWW 809
V ELP LH+ V +MFFC* ++ F++
Sbjct: 575 VPELPALHQNVCHTMFFC*RILQNFFF 655
Score = 23.5 bits (45), Expect(4) = 7e-025
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2 / -2
Query: 619 MGATTDMAVVLLWY 578
+GAT D+AVVLL Y
Sbjct: 456 IGATEDIAVVLL*Y 415
>gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F03_A022 5', mRNA sequence
Length = 736
Score = 174 bits (374), Expect(2) = 2e-046
Identities = 69/113 (61%), Positives = 89/113 (78%)
Frame = +3 / +1
Query: 339 LIIAQKNHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILH 518
++ + +H F G P NV PGT+VD+++CHP+NFDF++C AG IGT+RPTHYH+L
Sbjct: 241 IVAQKNHHTKLFPGGGGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLL 420
Query: 519 DEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 677
DE FS DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF+K +++
Sbjct: 421 DENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFLKAEDL 579
Score = 101 bits (216), Expect = 7e-021
Identities = 39/62 (62%), Positives = 50/62 (80%)
Frame = +3 / +1
Query: 201 KRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFI 380
+RKP Q+I+FRDGVSESQF+QVLN+ELQ I +AC ++ + PK T+I+AQKNHHTK F
Sbjct: 100 ERKPQQMIVFRDGVSESQFDQVLNVELQAIYKACNHIEAGYKPKITMIVAQKNHHTKLFP 279
Query: 381 PG 386
G
Sbjct: 280 GG 285
Score = 32.7 bits (65), Expect(2) = 2e-046
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3 / +1
Query: 726 PVQELPRLHEKVRSSMFFC* 785
PV ELP LH V ++MFFC*
Sbjct: 649 PVPELPVLHRNVCNTMFFC* 708
>gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 3', mRNA sequence
Length = 848
Score = 174 bits (375), Expect(2) = 4e-046
Identities = 70/112 (62%), Positives = 85/112 (75%)
Frame = +3 / +2
Query: 342 IIAQKNHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHD 521
+I + +H P NV PGT+VD ++CHP+NFDFY+C AG IGT+RPTHYH+L D
Sbjct: 59 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 238
Query: 522 EIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 677
E F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 239 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 394
Score = 31.3 bits (62), Expect(2) = 4e-046
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3 / +2
Query: 729 VQELPRLHEKVRSSMFFC*AVVLLFW 806
V ELP LH+ V +MFFC* + F+
Sbjct: 455 VPELPALHQNVCHTMFFC*ILQNFFF 532
>gb|CO157756.1|CO157756 FLD1_1_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H03_A029 5', mRNA sequence
Length = 441
Score = 177 bits (381), Expect = 1e-043
Identities = 71/112 (63%), Positives = 86/112 (76%)
Frame = +3 / +2
Query: 342 IIAQKNHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHD 521
+I +N+H P NV PGT+VD ++CHP+NFDFY+C AG IGT+RPTHYH+L D
Sbjct: 74 LIVAQNNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 253
Query: 522 EIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 677
E F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 254 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 409
>gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 5', mRNA sequence
Length = 840
Score = 125 bits (268), Expect(2) = 4e-043
Identities = 46/95 (48%), Positives = 64/95 (67%)
Frame = +3 / +2
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
NH + + + N+ PGTVVD+ +CHP DFY+C+HAG+ GT+ P HYH+L D+ F+
Sbjct: 296 NHRDRNSVDKRSGNILPGTVVDSTICHPTELDFYLCSHAGIHGTSTPAHYHVLWDDNTFT 475
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 476 ADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 580
Score = 70.3 bits (147), Expect(2) = 4e-043
Identities = 29/70 (41%), Positives = 42/70 (60%)
Frame = +3 / +2
Query: 168 ECLIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLII 347
E + + ++ +KP ++I + DGVSE QF QVL EL+ I AC +D + P T I+
Sbjct: 80 EIYLRSFYTATSQKPMRIIFYIDGVSEGQFYQVLLDELEAIRRACMSIDNDYQPPVTFIV 259
Query: 348 AQKNHHTKFF 377
QK HHT+ F
Sbjct: 260 VQKRHHTRLF 289
>gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 3', mRNA sequence
Length = 806
Score = 130 bits (278), Expect(2) = 7e-043
Identities = 49/93 (52%), Positives = 66/93 (70%)
Frame = +3 / +3
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K N+ PGTVVD+ +CHP FDFY+C+HAG+ GT+RP HYH+L D+ FS D LQ L ++
Sbjct: 183 KSGNILPGTVVDSTICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNN 362
Query: 567 LSYVYQRSTTAISVVAPICYAHLAAAQVGQFIK 665
L Y Y R T ++S+V P YAHLAA + +I+
Sbjct: 363 LCYTYARCTRSVSIVPPAYYAHLAAFRARFYIE 461
Score = 64.8 bits (135), Expect(2) = 7e-043
Identities = 28/56 (50%), Positives = 33/56 (58%)
Frame = +3 / +3
Query: 231 RDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDN 398
RDGVSE QF QVL EL+ I AC +DE + P T I+ QK HHT F D+
Sbjct: 3 RDGVSEGQFYQVLLDELEAIHRACMSIDEDYQPPVTFIVVQKRHHTHLFAHNHRDS 170
>gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_A04 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 513
Score = 172 bits (371), Expect = 3e-042
Identities = 69/113 (61%), Positives = 88/113 (77%)
Frame = +3 / +1
Query: 339 LIIAQKNHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILH 518
++ + +H F G P NV PGT+VD+++CHP+NFDF++C AG IGT+RPTHYH+L
Sbjct: 121 IVAQKNHHTKLFPGGGGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLL 300
Query: 519 DEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 677
DE FS DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF+K + +
Sbjct: 301 DENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFLKAEXL 459
>gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 3', mRNA sequence
Length = 686
Score = 124 bits (266), Expect(3) = 3e-042
Identities = 44/85 (51%), Positives = 63/85 (74%)
Frame = +3 / -3
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K NVPPGTVVD + HP+ FDFY+C+H G++GT++PTHYH+L D+ FS D+L+ L+++
Sbjct: 474 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 295
Query: 567 LSYVYQRSTTAISVVAPICYAHLAA 641
L Y + R T +S+ P+ YA LAA
Sbjct: 294 LCYTFARCTKPVSLAPPVYYADLAA 220
Score = 57.9 bits (120), Expect(3) = 3e-042
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = +3 / -3
Query: 192 SSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTK 371
SS K+ PD+++ FRDGVSESQF+ VLN EL+ + EA P ++ +++H
Sbjct: 681 SSNKKLPDRILFFRDGVSESQFDMVLNQELEALREAVAHFKNYNPPVSFIVAQKRHHTRL 502
Query: 372 FFIPGK 389
F G+
Sbjct: 501 FLGDGE 484
Score = 28.6 bits (56), Expect(3) = 3e-042
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3 / -3
Query: 741 PRLHEKVRSSMFFC* 785
P+LH+ V+++MFFC*
Sbjct: 123 PKLHDGVKNAMFFC* 79
>gb|DR100644.1|DR100644 STRR1_66_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_66_D11_A033 3', mRNA sequence
Length = 839
Score = 119 bits (254), Expect(3) = 2e-041
Identities = 45/79 (56%), Positives = 57/79 (72%)
Frame = +3 / -1
Query: 342 IIAQKNHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHD 521
+I + +H P NV PGT+VD ++CHP+NFDFY+C AG IGT+RPTHYH+L D
Sbjct: 755 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 576
Query: 522 EIGFSPDDLQELVHSLSYV 578
E F+ DDLQ LVH+LSYV
Sbjct: 575 ENSFTVDDLQILVHALSYV 519
Score = 58.3 bits (121), Expect(3) = 2e-041
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +3 / -1
Query: 579 YQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 677
YQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 428 YQRSTTAISSVAPINYAHLAATQMQQFLKADEL 330
Score = 30.9 bits (61), Expect(3) = 2e-041
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3 / -1
Query: 729 VQELPRLHEKVRSSMFFC*AVVLLFW 806
V ELP LH+ V +MFFC* + F+
Sbjct: 269 VLELPALHQNVCHTMFFC*ILQNFFF 192
>gb|BQ703142.1|BQ703142 NXSI_137_A09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_137_A09 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 489
Score = 170 bits (365), Expect = 2e-041
Identities = 68/108 (62%), Positives = 85/108 (78%)
Frame = +3 / +2
Query: 339 LIIAQKNHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILH 518
++ + +H F G P NV PGT+VD+++CHP+NFDF++C AG IGT+RPTHYH+L
Sbjct: 113 IVAQKNHHTKLFPGGGGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLL 292
Query: 519 DEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFI 662
DE FS DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF+
Sbjct: 293 DENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFL 436
>gb|AW784002.1|AW784002 NXNV_096_G04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_096_G04 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 312
Score = 166 bits (357), Expect = 2e-040
Identities = 65/93 (69%), Positives = 78/93 (83%)
Frame = +3 / +1
Query: 384 GKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVH 563
G P NV PGT+VD+++CHP+NFDF++C AG IGT+RPTHYH+L DE FS DDLQ LVH
Sbjct: 16 GGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLLDENDFSVDDLQILVH 195
Query: 564 SLSYVYQRSTTAISVVAPICYAHLAAAQVGQFI 662
+LSYVYQRSTTAIS VAP YAHLAA+Q+ QF+
Sbjct: 196 ALSYVYQRSTTAISSVAPXXYAHLAASQMQQFL 294
>gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC49 3' end, mRNA sequence
Length = 824
Score = 122 bits (262), Expect(2) = 1e-039
Identities = 43/84 (51%), Positives = 62/84 (73%)
Frame = +3 / +2
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K NVPPGTVVD + HP+ FDFY+C+H G++GT++PTHYH+L D+ FS D+L+ L+++
Sbjct: 572 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 751
Query: 567 LSYVYQRSTTAISVVAPICYAHLA 638
L Y + R T +S+ P+ YA LA
Sbjct: 752 LCYTFARCTKPVSLAPPVYYADLA 823
Score = 61.1 bits (127), Expect(2) = 1e-039
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +3 / +2
Query: 174 LIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQ 353
L+D Y + K+ PD+++ FRDGVSESQF+ VLN EL+ + EA P ++ +
Sbjct: 347 LLDDYFKANKKLPDRILFFRDGVSESQFDMVLNQELEALREAVAHFKNYNPPVSFIVAQK 526
Query: 354 KNHHTKFFIPGK 389
++H F G+
Sbjct: 527 RHHTRLFLGDGE 562
>gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_B02_A029 5', mRNA sequence
Length = 700
Score = 137 bits (293), Expect = 2e-031
Identities = 53/87 (60%), Positives = 65/87 (74%)
Frame = +3 / +2
Query: 342 IIAQKNHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHD 521
+I + +H P NV PGT+VD ++CHP+NFDFY+C AG IGT+RPTHYH+L D
Sbjct: 224 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 403
Query: 522 EIGFSPDDLQELVHSLSYVYQRSTTAI 602
E F+ DDLQ LVH+LSYVYQRSTTAI
Sbjct: 404 ENSFTVDDLQILVHALSYVYQRSTTAI 484
Score = 105 bits (225), Expect(4) = 1e-039
Identities = 42/68 (61%), Positives = 55/68 (80%)
Frame = +3 / +2
Query: 201 KRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFI 380
+RKP Q+IIFRDGVSESQF+QVLN+ELQ I++AC +++ + PK TLI+AQKNHHTK F
Sbjct: 86 ERKPQQMIIFRDGVSESQFDQVLNVELQAILKACNDIEDGYRPKVTLIVAQKNHHTKLFP 265
Query: 381 PGKPDNVP 404
G+ + P
Sbjct: 266 TGQGNVQP 289
Score = 59.3 bits (123), Expect(3) = 9e-022
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = -1 / -1
Query: 416 HSSWWDIIWLSRNEKFSVMILLGNNQRELGIPFLIKKFASLDDLLQLNVQHLIKLTFANT 237
++S W I L+ E+ VMILL NNQ G ++ L+ LQLN+Q L+KL F ++
Sbjct: 301 YNSPWLHIALTSWEQLRVMILLRNNQCNFGPITILYVITCLEYSLQLNIQDLVKLRFTDS 122
Query: 236 VPEYDNLVRLS 204
+ E D+L+RLS
Sbjct: 121 ISENDHLLRLS 89
Score = 51.5 bits (106), Expect(3) = 9e-022
Identities = 28/47 (59%), Positives = 29/47 (61%)
Frame = -2 / -2
Query: 535 LKPISSCRMW**VGLVVPIIPACAHM*KSKFFGWQTLLSTTVPGGTL 395
+K SS W**VG VPI PA H *KSKF G Q ST VPG TL
Sbjct: 417 VKLFSSSNTW**VGREVPIGPA*GHK*KSKFLG*QI*ASTIVPGCTL 277
Score = 41.4 bits (84), Expect(4) = 1e-039
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3 / +3
Query: 576 VYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 677
+Y + S VAPI YAHLAA Q+ QF+K DE+
Sbjct: 456 MYIKGVQRQSSVAPINYAHLAATQMQQFLKADEL 557
Score = 39.1 bits (79), Expect(4) = 1e-039
Identities = 25/67 (37%), Positives = 31/67 (46%)
Frame = +1 / +3
Query: 397 MSHQELWWTTKSAIQRTSISTCVRMLE*SGLRGQLTTTSCMMR*ASVLMICRSWCIRSLM 576
M +Q L + I T ISTC L L G L T +MR + MI R W + LM
Sbjct: 279 MCNQGLL*MLRFVILETLISTCALRLAQ*ELHGLLITMYYLMRIVLLWMIFRFWSMHYLM 458
Query: 577 CTKGAQQ 597
KG Q+
Sbjct: 459 YIKGVQR 479
Score = 35.0 bits (70), Expect(3) = 9e-022
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = -2 / -1
Query: 784 QQKNIELLTFSCRRGSSWTGTLPAEVCPP*LEDVSDISSN 665
QQKNI TF CR GSS T P V P L D +S +
Sbjct: 673 QQKNIVWQTFWCRAGSSGTCAPPDAVDPSALPDREAVSES 554
Score = 33.1 bits (66), Expect(4) = 1e-039
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3 / +3
Query: 729 VQELPRLHEKVRSSMFFC*AVVLLFWW 809
V ELP LH+ V +MFFC* ++ F++
Sbjct: 618 VPELPALHQNVCHTMFFC*RILQNFFF 698
>gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 5', mRNA sequence
Length = 844
Score = 123 bits (263), Expect(3) = 9e-039
Identities = 45/85 (52%), Positives = 63/85 (74%)
Frame = +3 / +2
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K N+ PGTVVD+ +C PK FDFY+C+HAG+ GT++P HY++L DE GF+P+D+Q L +
Sbjct: 392 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 571
Query: 567 LSYVYQRSTTAISVVAPICYAHLAA 641
L + Y R T ++S+V YAHLAA
Sbjct: 572 LCFTYARCTRSVSIVPACYYAHLAA 646
Score = 41.4 bits (84), Expect(3) = 9e-039
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3 / +2
Query: 174 LIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFL 311
L+ + KP++++ +RDGVS+ QF VLN EL + +A + L
Sbjct: 101 LLSSFQERCNTKPERILYYRDGVSDGQFEMVLNNELGALKKAIEAL 238
Score = 34.5 bits (69), Expect(3) = 9e-039
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3 / +2
Query: 324 NPKFTLIIAQKNHHTKFF 377
+PK T I+ QK HHT+FF
Sbjct: 308 SPKVTFIVVQKRHHTRFF 361
>gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 3', mRNA sequence
Length = 821
Score = 127 bits (272), Expect(3) = 3e-038
Identities = 46/91 (50%), Positives = 67/91 (73%)
Frame = +3 / -3
Query: 393 DNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHSLS 572
DN+PPGTVVD + HP+ FDFY+C+H+G+ GT+RPTHYH+L DE F D+LQ+L+++L
Sbjct: 435 DNIPPGTVVDTLITHPREFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLC 256
Query: 573 YVYQRSTTAISVVAPICYAHLAAAQVGQFIK 665
Y + R T +S+V YAHLAA + +++
Sbjct: 255 YTFVRCTKPVSLVPLAYYAHLAAYRARLYLE 163
Score = 48.3 bits (99), Expect(3) = 3e-038
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +3 / -3
Query: 174 LIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACK 305
L++ Y K+ P +++ FRDGVSE QF +VL EL+ + ACK
Sbjct: 756 LLEDYRDEIKQLPKRILFFRDGVSEGQFYKVLEEELRALKAACK 625
Score = 26.3 bits (51), Expect(3) = 3e-038
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3 / -3
Query: 738 LPRLHEKVRSSMFFC* 785
LP+L+E V+ MF+C*
Sbjct: 51 LPKLNENVKKLMFYC* 4
>gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 3', mRNA sequence
Length = 857
Score = 133 bits (285), Expect(2) = 5e-037
Identities = 50/103 (48%), Positives = 70/103 (67%)
Frame = +3 / +1
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
NH + + + N+ PGTVVD+ +CHP FDFY+C+HAG+ GT+RP HYH+L D+ FS
Sbjct: 112 NHRDRNSVDKRSGNILPGTVVDSTICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFS 291
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIK 665
D LQ L ++L Y Y R T ++S+V P YAHLAA + +I+
Sbjct: 292 ADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYIE 420
Score = 41.8 bits (85), Expect(2) = 5e-037
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3 / +1
Query: 276 ELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFF 377
EL+ I AC +D + P T I+ QK HHT+ F
Sbjct: 4 ELEAIRRACMSIDNDYQPPVTXIVVQKRHHTRLF 105
>gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 5', mRNA sequence
Length = 796
Score = 133 bits (284), Expect(2) = 2e-036
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = +3 / +3
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 234 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 413
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 414 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 518
Score = 40.5 bits (82), Expect(2) = 2e-036
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3 / +1
Query: 207 KPDQVIIFRDGVSESQFNQVLNIEL 281
KP+++I +RDGVSE QF QVL EL
Sbjct: 61 KPERIIFYRDGVSEGQFYQVLLYEL 135
>gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D08_A029 5', mRNA sequence
Length = 797
Score = 133 bits (284), Expect(2) = 1e-033
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = +3 / +3
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 492 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 671
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 672 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 776
Score = 34.1 bits (68), Expect(2) = 1e-033
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3 / +3
Query: 6 PGHXXXXXXXXXXXXREWPLISKYRASVRTQSPKMEMIDSLFK 134
PG ++WP ++KY V Q+ + E+I L+K
Sbjct: 105 PGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYK 233
>gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 5', mRNA sequence
Length = 831
Score = 133 bits (284), Expect(2) = 1e-033
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = +3 / +2
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 428 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 607
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 608 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 712
Score = 34.1 bits (68), Expect(2) = 1e-033
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3 / +2
Query: 6 PGHXXXXXXXXXXXXREWPLISKYRASVRTQSPKMEMIDSLFK 134
PG ++WP ++KY V Q+ + E+I L+K
Sbjct: 41 PGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYK 169
>gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_E04_A029 5', mRNA sequence
Length = 924
Score = 133 bits (284), Expect(2) = 1e-033
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = +3 / +3
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 390 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 569
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 570 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 674
Score = 34.1 bits (68), Expect(2) = 1e-033
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3 / +3
Query: 6 PGHXXXXXXXXXXXXREWPLISKYRASVRTQSPKMEMIDSLFK 134
PG ++WP ++KY V Q+ + E+I L+K
Sbjct: 3 PGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYK 131
>gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clone RS34D06, mRNA sequence
Length = 646
Score = 100 bits (213), Expect(3) = 2e-032
Identities = 40/79 (50%), Positives = 51/79 (64%)
Frame = +3 / +3
Query: 405 PGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHSLSYVYQ 584
PG K HP DF +C+HAG+ GT+RP HYH+L DE F+ D LQ L ++L Y Y
Sbjct: 330 PGMEWIPKFGHPTELDFNLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYA 509
Query: 585 RSTTAISVVAPICYAHLAA 641
R T ++S+V P YAHLAA
Sbjct: 510 RCTRSVSIVTPAYYAHLAA 566
Score = 40.5 bits (82), Expect(3) = 2e-032
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3 / +1
Query: 207 KPDQVIIFRDGVSESQFNQVLNIEL 281
KP+++I +RDGVSE QF QVL EL
Sbjct: 106 KPERIIFYRDGVSEGQFYQVLLYEL 180
Score = 36.8 bits (74), Expect(3) = 2e-032
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3 / +2
Query: 288 IIEACKFLDEKWNPKFTLIIAQKNHHTKFF 377
I +AC L+ + P T ++ QK HHT+ F
Sbjct: 188 IRKACASLEPNYQPPVTFVVVQKRHHTRIF 277
>gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clone RS66B04, mRNA sequence
Length = 557
Score = 123 bits (263), Expect(2) = 8e-032
Identities = 45/85 (52%), Positives = 63/85 (74%)
Frame = +3 / +1
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K N+ PGTVVD+ +C PK FDFY+C+HAG+ GT++P HY++L DE GF+P+D+Q L +
Sbjct: 163 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 342
Query: 567 LSYVYQRSTTAISVVAPICYAHLAA 641
L + Y R T ++S+V YAHLAA
Sbjct: 343 LCFTYARCTRSVSIVPACYYAHLAA 417
Score = 34.5 bits (69), Expect(2) = 8e-032
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3 / +1
Query: 324 NPKFTLIIAQKNHHTKFF 377
+PK T I+ QK HHT+FF
Sbjct: 79 SPKVTFIVVQKRHHTRFF 132
>gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_D07_A034 5', mRNA sequence
Length = 533
Score = 123 bits (263), Expect(2) = 8e-032
Identities = 45/85 (52%), Positives = 63/85 (74%)
Frame = +3 / +3
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K N+ PGTVVD+ +C PK FDFY+C+HAG+ GT++P HY++L DE GF+P+D+Q L +
Sbjct: 192 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 371
Query: 567 LSYVYQRSTTAISVVAPICYAHLAA 641
L + Y R T ++S+V YAHLAA
Sbjct: 372 LCFTYARCTRSVSIVPACYYAHLAA 446
Score = 34.5 bits (69), Expect(2) = 8e-032
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3 / +3
Query: 324 NPKFTLIIAQKNHHTKFF 377
+PK T I+ QK HHT+FF
Sbjct: 108 SPKVTFIVVQKRHHTRFF 161
>gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 5', mRNA sequence
Length = 793
Score = 127 bits (272), Expect(2) = 4e-031
Identities = 46/91 (50%), Positives = 67/91 (73%)
Frame = +3 / -3
Query: 393 DNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHSLS 572
DN+PPGTVVD + HP+ FDFY+C+H+G+ GT+RPTHYH+L DE F D+LQ+L+++L
Sbjct: 566 DNIPPGTVVDTLITHPREFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLC 387
Query: 573 YVYQRSTTAISVVAPICYAHLAAAQVGQFIK 665
Y + R T +S+V YAHLAA + +++
Sbjct: 386 YTFVRCTKPVSLVPLAYYAHLAAYRARLYLE 294
Score = 28.1 bits (55), Expect(2) = 4e-031
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3 / -3
Query: 738 LPRLHEKVRSSMFFC*AVVLLF 803
LP+L+E V+ MF+C* LF
Sbjct: 182 LPKLNENVKKLMFYC*KKTELF 117
>gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 3', mRNA sequence
Length = 818
Score = 123 bits (263), Expect(2) = 5e-031
Identities = 45/85 (52%), Positives = 63/85 (74%)
Frame = +3 / +1
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K N+ PGTVVD+ +C PK FDFY+C+HAG+ GT++P HY++L DE GF+P+D+Q L +
Sbjct: 109 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 288
Query: 567 LSYVYQRSTTAISVVAPICYAHLAA 641
L + Y R T ++S+V YAHLAA
Sbjct: 289 LCFTYARCTRSVSIVPACYYAHLAA 363
Score = 31.8 bits (63), Expect(2) = 5e-031
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3 / +1
Query: 324 NPKFTLIIAQKNHHTKFF 377
+PK T I+ Q HHT+FF
Sbjct: 25 SPKVTFIVVQXRHHTRFF 78
>gb|DR095364.1|DR095364 STRR1_20_C06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 5', mRNA sequence
Length = 870
Score = 75.3 bits (158), Expect(3) = 9e-031
Identities = 31/65 (47%), Positives = 40/65 (61%)
Frame = +3 / +2
Query: 204 RKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIP 383
+KP ++I +RDGVSE QF QVL EL+ I AC +DE + P T I+ QK HHT F
Sbjct: 572 QKPKRIIFYRDGVSEGQFYQVLLDELEAIHRACMSIDEDYQPPVTFIVVQKRHHTHLFAH 751
Query: 384 GKPDN 398
D+
Sbjct: 752 NHRDS 766
Score = 58.8 bits (122), Expect(3) = 9e-031
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +3 / +2
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAG 476
K N+ PGTVVD+ +CHP FDFY+C+HAG
Sbjct: 779 KSGNILPGTVVDSTICHPTEFDFYLCSHAG 868
Score = 38.2 bits (77), Expect(3) = 9e-031
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3 / +2
Query: 6 PGHXXXXXXXXXXXXREWPLISKYRASVRTQSPKMEMIDSLFKPREAEDDGLIRECLI 179
PG ++WP ++KY V Q+ + EMI+ LFK + G I +I
Sbjct: 362 PGEDTSPSIAAVVASQDWPEVTKYVGLVSAQAHRQEMIEDLFKVVKDPKRGAIIRSMI 535
>gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_H03_A029 5', mRNA sequence
Length = 685
Score = 123 bits (263), Expect(2) = 1e-030
Identities = 45/85 (52%), Positives = 63/85 (74%)
Frame = +3 / -3
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K N+ PGTVVD+ +C PK FDFY+C+HAG+ GT++P HY++L DE GF+P+D+Q L +
Sbjct: 605 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 426
Query: 567 LSYVYQRSTTAISVVAPICYAHLAA 641
L + Y R T ++S+V YAHLAA
Sbjct: 425 LCFTYARCTRSVSIVPACYYAHLAA 351
Score = 30.9 bits (61), Expect(2) = 1e-030
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3 / -3
Query: 330 KFTLIIAQKNHHTKFF 377
K T I+ QK HHT+FF
Sbjct: 683 KVTFIVVQKRHHTRFF 636
>gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C07_A029 5', mRNA sequence
Length = 741
Score = 124 bits (266), Expect(2) = 2e-030
Identities = 44/85 (51%), Positives = 63/85 (74%)
Frame = +3 / +2
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K NVPPGTVVD + HP+ FDFY+C+H G++GT++PTHYH+L D+ FS D+L+ L+++
Sbjct: 77 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 256
Query: 567 LSYVYQRSTTAISVVAPICYAHLAA 641
L Y + R T +S+ P+ YA LAA
Sbjct: 257 LCYTFARCTKPVSLAPPVYYADLAA 331
Score = 28.6 bits (56), Expect(2) = 2e-030
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3 / +2
Query: 741 PRLHEKVRSSMFFC* 785
P+LH+ V+++MFFC*
Sbjct: 428 PKLHDGVKNAMFFC* 472
>gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_E06_A029 3', mRNA sequence
Length = 900
Score = 133 bits (284), Expect = 3e-030
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = +3 / +3
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 156 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 335
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 336 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 440
>gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 5', mRNA sequence
Length = 845
Score = 133 bits (284), Expect = 3e-030
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = +3 / +2
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 257 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 436
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 437 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 541
>gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 3', mRNA sequence
Length = 871
Score = 133 bits (284), Expect = 3e-030
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = +3 / +3
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 111 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 290
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 291 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 395
>gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 3', mRNA sequence
Length = 823
Score = 133 bits (284), Expect = 3e-030
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = +3 / +2
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 68 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 247
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 248 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 352
>gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 3', mRNA sequence
Length = 759
Score = 133 bits (284), Expect = 3e-030
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = +3 / +3
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 15 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 194
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 195 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 299
>gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 5', mRNA sequence
Length = 626
Score = 133 bits (284), Expect = 3e-030
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = +3 / +2
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 200 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 379
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 380 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 484
>gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 5', mRNA sequence
Length = 722
Score = 123 bits (263), Expect(2) = 5e-030
Identities = 43/82 (52%), Positives = 62/82 (75%)
Frame = +3 / -2
Query: 396 NVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHSLSY 575
NVPPGTVVD + HP+ FDFY+C+H G++GT++PTHYH+L D+ FS D+L+ L+++L Y
Sbjct: 718 NVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCY 539
Query: 576 VYQRSTTAISVVAPICYAHLAA 641
+ R T +S+ P+ YA LAA
Sbjct: 538 TFARCTKPVSLAPPVYYADLAA 473
Score = 28.6 bits (56), Expect(2) = 5e-030
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3 / -2
Query: 741 PRLHEKVRSSMFFC* 785
P+LH+ V+++MFFC*
Sbjct: 376 PKLHDGVKNAMFFC* 332
>gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A07 5' similar to Arabidopsis thaliana
sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 131 bits (280), Expect = 1e-029
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +3 / +2
Query: 396 NVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHSLSY 575
N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+ D LQ L ++L Y
Sbjct: 74 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 253
Query: 576 VYQRSTTAISVVAPICYAHLAA 641
Y R T ++S+V P YAHLAA
Sbjct: 254 TYARCTRSVSIVPPAYYAHLAA 319
>gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_B11_A021 3', mRNA
sequence
Length = 645
Score = 131 bits (280), Expect = 1e-029
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +3 / +2
Query: 396 NVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHSLSY 575
N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+ D LQ L ++L Y
Sbjct: 23 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 202
Query: 576 VYQRSTTAISVVAPICYAHLAA 641
Y R T ++S+V P YAHLAA
Sbjct: 203 TYARCTRSVSIVPPAYYAHLAA 268
>gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 3', mRNA sequence
Length = 755
Score = 131 bits (280), Expect = 1e-029
Identities = 49/95 (51%), Positives = 65/95 (68%)
Frame = +3 / +3
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 6 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 185
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++ Y Y R T ++S+V P YAHLAA
Sbjct: 186 ADGLQSLTNNFCYTYARCTRSVSIVPPAYYAHLAA 290
>gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 3', mRNA sequence
Length = 741
Score = 131 bits (280), Expect = 1e-029
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +3 / +1
Query: 396 NVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHSLSY 575
N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+ D LQ L ++L Y
Sbjct: 31 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 210
Query: 576 VYQRSTTAISVVAPICYAHLAA 641
Y R T ++S+V P YAHLAA
Sbjct: 211 TYARCTRSVSIVPPAYYAHLAA 276
>gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9201r, mRNA sequence
Length = 580
Score = 130 bits (279), Expect = 1e-029
Identities = 49/95 (51%), Positives = 65/95 (68%)
Frame = +3 / +1
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTV D+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 73 NNHQDRNATDRSGNILPGTVXDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 252
Query: 537 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 641
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 253 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 357
>gb|CF478983.1|CF478983 RTWW3_21_F03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F03_A022 3', mRNA sequence
Length = 608
Score = 114 bits (244), Expect(2) = 1e-028
Identities = 48/66 (72%), Positives = 57/66 (86%)
Frame = +3 / +3
Query: 480 IGTTRPTHYHILHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQF 659
IGT+RPTHYH+L DE FS DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF
Sbjct: 3 IGTSRPTHYHVLLDENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQF 182
Query: 660 IKFDEM 677
+K +++
Sbjct: 183 LKAEDL 200
Score = 32.7 bits (65), Expect(2) = 1e-028
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3 / +3
Query: 726 PVQELPRLHEKVRSSMFFC* 785
PV ELP LH V ++MFFC*
Sbjct: 270 PVPELPVLHRNVCNTMFFC* 329
>gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV063_D02 5' similar to Arabidopsis thaliana
sequence At1g69440 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 615
Score = 112 bits (240), Expect(3) = 1e-028
Identities = 41/85 (48%), Positives = 60/85 (70%)
Frame = +3 / +1
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K NVPPGTVVD + P+ FD Y+C+H G++GT++ THYH+L D+ FS D+L+ L+++
Sbjct: 211 KSGNVPPGTVVDTVIVRPRQFDGYLCSHNGLLGTSKRTHYHVLWDDNRFSSDELETLINN 390
Query: 567 LSYVYQRSTTAISVVAPICYAHLAA 641
L Y + R T +S+ P+ YA LAA
Sbjct: 391 LCYTFARCTKPVSLAPPVYYADLAA 465
Score = 28.6 bits (56), Expect(3) = 1e-028
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3 / +3
Query: 237 GVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHH 365
GVSESQF VLN EL + EA P ++ + H
Sbjct: 48 GVSESQFYMVLNQEL*ALREAVAHFKNXSXPVSFIVTHXETSH 176
Score = 23.5 bits (45), Expect(3) = 1e-028
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +3 / +1
Query: 738 LPRLHEKVRSSMFFC* 785
+P+LH+ V++ +F C*
Sbjct: 559 VPKLHDGVKNXVFXC* 606
>gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_F12_A034 3', mRNA sequence
Length = 746
Score = 114 bits (243), Expect(2) = 3e-027
Identities = 39/77 (50%), Positives = 57/77 (74%)
Frame = +3 / +1
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K NVPPGTVVD + HP+ FDFY+C+H G++GT++PTHYH+L D+ FS D+L+ L+++
Sbjct: 25 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 204
Query: 567 LSYVYQRSTTAISVVAP 617
L Y + R T +S+ P
Sbjct: 205 LCYTFARCTKPVSLAPP 255
Score = 28.6 bits (56), Expect(2) = 3e-027
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3 / +2
Query: 741 PRLHEKVRSSMFFC* 785
P+LH+ V+++MFFC*
Sbjct: 377 PKLHDGVKNAMFFC* 421
>gb|CX651789.1|CX651789 COLD1_54_G01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_G01_A029 5', mRNA sequence
Length = 652
Score = 107 bits (229), Expect(2) = 9e-027
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +3 / -1
Query: 492 RPTHYHILHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFD 671
RPTHYH+L DE F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K D
Sbjct: 652 RPTHYHVLLDENSFIVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKAD 473
Query: 672 EM 677
E+
Sbjct: 472 EL 467
Score = 33.1 bits (66), Expect(2) = 9e-027
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3 / -1
Query: 729 VQELPRLHEKVRSSMFFC*AVVLLFWW 809
V ELP LH+ V +MFFC* ++ F++
Sbjct: 406 VPELPALHQNVCHTMFFC*RILQNFFF 326
>gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_E04_A029 5', mRNA sequence
Length = 643
Score = 118 bits (252), Expect = 7e-026
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +3 / -1
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFSPDDLQELVHS 566
K N+ PGTVVD+ +C PK FDFY C+HAG+ GT++P HY++ DE GF P+D+Q L +
Sbjct: 607 KNGNLLPGTVVDSVICQPKIFDFYFCSHAGIKGTSKPAHYNVFQDENGFPPNDIQRLTND 428
Query: 567 LSYVYQRSTTAISVVAPICYAHLAA 641
L + Y R T +S+V YAHLAA
Sbjct: 427 LCFTYARCTRFVSIVPACYYAHLAA 353
>gb|DR012422.1|DR012422 HEAT1_12_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_12_E12_A029 5', mRNA sequence
Length = 480
Score = 63.4 bits (132), Expect(4) = 1e-025
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +3 / +2
Query: 387 KPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRP 497
K N+ PGTVVD+ +C PK FDFY+C+HAG+ GT++P
Sbjct: 323 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKP 433
Score = 41.8 bits (85), Expect(4) = 1e-025
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3 / +2
Query: 147 EDDGLIRECLIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFL 311
+ G I + L+ + KP++++ +RDGVS+ QF VLN EL + +A + L
Sbjct: 5 QQTGGIFKELLSSFQERCNTKPERILYYRDGVSDGQFEMVLNNELGALKKAIEAL 169
Score = 34.5 bits (69), Expect(4) = 1e-025
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3 / +2
Query: 324 NPKFTLIIAQKNHHTKFF 377
+PK T I+ QK HHT+FF
Sbjct: 239 SPKVTFIVVQKRHHTRFF 292
Score = 32.2 bits (64), Expect(4) = 1e-025
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3 / +3
Query: 495 PTHYHILHDEIGFSPD 542
PTHY++L DE GF+P+
Sbjct: 432 PTHYNVLQDENGFTPN 479
>gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_E12_A022 5', mRNA
sequence
Length = 748
Score = 101 bits (215), Expect(2) = 2e-024
Identities = 37/71 (52%), Positives = 50/71 (70%)
Frame = +3 / +3
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 531 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 710
Query: 537 PDDLQELVHSL 569
D LQ L ++L
Sbjct: 711 ADGLQSLTNNL 743
Score = 34.1 bits (68), Expect(2) = 2e-024
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3 / +3
Query: 6 PGHXXXXXXXXXXXXREWPLISKYRASVRTQSPKMEMIDSLFK 134
PG ++WP ++KY V Q+ + E+I L+K
Sbjct: 144 PGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYK 272
>gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 5', mRNA sequence
Length = 779
Score = 101 bits (215), Expect(2) = 3e-024
Identities = 37/71 (52%), Positives = 50/71 (70%)
Frame = +3 / +1
Query: 357 NHHTKFFIPGKPDNVPPGTVVDNKVCHPKNFDFYMCAHAGMIGTTRPTHYHILHDEIGFS 536
N+H + N+ PGTVVD+K+CHP FDFY+C+HAG+ GT+RP HYH+L DE F+
Sbjct: 565 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 744
Query: 537 PDDLQELVHSL 569
D LQ L ++L
Sbjct: 745 ADGLQSLTNNL 777
Score = 34.1 bits (68), Expect(2) = 3e-024
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3 / +1
Query: 6 PGHXXXXXXXXXXXXREWPLISKYRASVRTQSPKMEMIDSLFK 134
PG ++WP ++KY V Q+ + E+I L+K
Sbjct: 178 PGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYK 306
>gb|CF663944.1|CF663944 RTCNT1_6_E05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_E05_A029 3', mRNA sequence
Length = 401
Score = 101 bits (216), Expect(2) = 5e-024
Identities = 39/62 (62%), Positives = 50/62 (80%)
Frame = +3 / -3
Query: 201 KRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFI 380
+RKP Q+I+FRDGVSESQF+QVLN+ELQ I +AC ++ + PK T+I+AQKNHHTK F
Sbjct: 261 ERKPQQMIVFRDGVSESQFDQVLNVELQAIYKACNHIEAGYKPKITMIVAQKNHHTKLFP 82
Query: 381 PG 386
G
Sbjct: 81 GG 76
Score = 29.9 bits (59), Expect(2) = 5e-024
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3 / -3
Query: 96 QSPKMEMIDSLFKPREAEDD 155
QSPK+EMI++L+KP + D
Sbjct: 384 QSPKVEMIEALYKPLPSGKD 325
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 564,729,424
Number of Sequences: 355925
Number of extensions: 8312865
Number of successful extensions: 42402
Number of sequences better than 1.0e-020: 60
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 15479337080
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)