TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.2
(1076 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus add... 171 2e-056
gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus add... 171 3e-045
gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered lo... 170 3e-045
gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinu... 171 5e-045
gb|CO157756.1|CO157756 FLD1_1_H03.g1_A029 Root flooded Pinu... 174 8e-043
gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response R... 122 3e-042
gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus... 122 8e-042
gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response R... 126 9e-042
gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side ... 169 4e-041
gb|DR100644.1|DR100644 STRR1_66_D11.b1_A033 Stem Response R... 116 1e-040
gb|BQ703142.1|BQ703142 NXSI_137_A09_F NXSI (Nsf Xylem Side ... 166 3e-040
gb|AW784002.1|AW784002 NXNV_096_G04_F Nsf Xylem Normal wood... 162 3e-039
gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo li... 120 7e-039
gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated wi... 126 1e-037
gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pin... 119 2e-037
gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response R... 129 7e-036
gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus adde... 130 1e-035
gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pin... 134 2e-035
gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clon... 100 2e-032
gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control P... 130 7e-032
gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus pota... 130 7e-032
gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus ph... 130 8e-032
gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clon... 119 1e-030
gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch... 119 1e-030
gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated wi... 126 4e-030
gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus pota... 122 5e-030
gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pin... 119 9e-030
gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus... 121 1e-029
gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus ni... 119 2e-029
gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus pota... 130 2e-029
gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus pota... 130 2e-029
gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus pota... 130 2e-029
gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus pota... 130 2e-029
gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch... 130 2e-029
gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch... 130 2e-029
gb|DR095364.1|DR095364 STRR1_20_C06.g1_A033 Stem Response R... 75 3e-029
gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side ... 128 7e-029
gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine ro... 128 7e-029
gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus pota... 128 7e-029
gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus adde... 128 7e-029
gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9... 127 1e-028
gb|CF478983.1|CF478983 RTWW3_21_F03.b1_A022 Well-watered lo... 113 3e-028
gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root w... 110 6e-028
gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch... 111 5e-026
gb|CX651789.1|CX651789 COLD1_54_G01.g1_A029 Root cold Pinus... 107 8e-026
gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus pota... 114 1e-024
gb|DR012422.1|DR012422 HEAT1_12_E12.g1_A029 Root at 37 C fo... 60 3e-024
gb|CF663944.1|CF663944 RTCNT1_6_E05.b1_A029 Root control Pi... 101 4e-024
gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine r... 99 2e-022
gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus pota... 99 2e-022
>gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 5', mRNA sequence
Length = 830
Score = 171 bits (369), Expect(3) = 2e-056
Identities = 70/112 (62%), Positives = 83/112 (74%)
Frame = -1 / +2
Query: 737 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 558
+I + +H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 380 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 559
Query: 557 EIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
E F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 560 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 715
Score = 106 bits (226), Expect(2) = 7e-027
Identities = 43/72 (59%), Positives = 56/72 (77%)
Frame = -1 / +2
Query: 878 KRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFI 699
+RKP Q+IIFRDGVSESQF+QVLN+ELQ I++AC +++ + PK TLI+AQKNHHTK F
Sbjct: 242 ERKPQQMIIFRDGVSESQFDQVLNVELQAILKACNDIEDGYRPKVTLIVAQKNHHTKLFP 421
Query: 698 PGKPDNVPAGTV 663
G+ + P V
Sbjct: 422 TGQGNVQPGTIV 457
Score = 62.0 bits (129), Expect(3) = 2e-056
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = -1 / +2
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRETDDD 924
REWPLIS+YRASVRTQSPK+EMI++L K T D
Sbjct: 74 REWPLISRYRASVRTQSPKVEMIEALHKQSPTGKD 178
Score = 58.8 bits (122), Expect(4) = 7e-034
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +3 / -2
Query: 666 SASWNIIWLSRNEKFSVVILLGNDQCELGIPFLIKKFASLNDLLQLNVQHLVKLTFTNTV 845
++ W I L+ E+ V+ILL N+QC G ++ L LQLN+Q LVKL FT+++
Sbjct: 454 NSPWLHIALTSWEQLRVMILLRNNQCNFGPITILYVITCLEYSLQLNIQDLVKLRFTDSI 275
Query: 846 PEDDDLVRLS 875
E+D L+ LS
Sbjct: 274 SENDHLLWLS 245
Score = 48.7 bits (100), Expect(4) = 7e-034
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +1 / -3
Query: 958 SIISIFGDWVRTDALYFEIRGHSRELTTAATDXTS 1062
SIIS GD V T+ALY +I+GHSRE TTA + S
Sbjct: 144 SIISTLGDCVLTEALYLDIKGHSREATTAEIEGES 40
Score = 47.8 bits (98), Expect(4) = 7e-034
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +1 / -3
Query: 379 PWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWY 501
P + VS+ SS F NC W AA+ A* +GAT D+AVVLL Y
Sbjct: 738 PDREAVSESSSAFKNCCIWVAAKCA*FIGATEDIAVVLL*Y 616
Score = 45.1 bits (92), Expect(4) = 7e-034
Identities = 28/47 (59%), Positives = 29/47 (61%)
Frame = +1 / -3
Query: 544 LKPISSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTL 684
+K SS **VG VPI PA H *KSKFLG*Q ST VP TL
Sbjct: 573 VKLFSSSNTW**VGREVPIGPA*GHK*KSKFLG*QI*ASTIVPGCTL 433
Score = 35.0 bits (70), Expect(2) = 7e-027
Identities = 24/69 (34%), Positives = 28/69 (40%)
Frame = -2 / +3
Query: 682 MFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLT 503
M LL + VI T ISTC L L G L + R + M R W L
Sbjct: 435 MCNQGLL*MLRFVILETLISTCALRLAQ*ELHGLLITMYYLMRIVLLWMIFRFWSMHYLM 614
Query: 502 CTKGAQQPY 476
C KG Q+ Y
Sbjct: 615 CIKGVQRQY 641
Score = 29.9 bits (59), Expect(3) = 2e-056
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1 / +2
Query: 350 VQELPRLHEKVRSSMFFC 297
V ELP LH+ V +MFFC
Sbjct: 776 VPELPALHQNVCHTMFFC 829
>gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 3', mRNA sequence
Length = 848
Score = 171 bits (369), Expect(2) = 3e-045
Identities = 70/112 (62%), Positives = 83/112 (74%)
Frame = -1 / +2
Query: 737 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 558
+I + +H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 59 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 238
Query: 557 EIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
E F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 239 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 394
Score = 31.3 bits (62), Expect(2) = 3e-045
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1 / +2
Query: 350 VQELPRLHEKVRSSMFFC*AAGN 282
V ELP LH+ V +MFFC* N
Sbjct: 455 VPELPALHQNVCHTMFFC*ILQN 523
>gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F03_A022 5', mRNA sequence
Length = 736
Score = 170 bits (366), Expect(2) = 3e-045
Identities = 68/113 (60%), Positives = 88/113 (77%)
Frame = -1 / +1
Query: 740 LIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILH 561
++ + +H F G P NV GT+VD+++CHPRNFDF++C AG IGT+RPTHYH+L
Sbjct: 241 IVAQKNHHTKLFPGGGGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLL 420
Query: 560 DEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
DE F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF+K +++
Sbjct: 421 DENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFLKAEDL 579
Score = 101 bits (216), Expect = 7e-021
Identities = 39/62 (62%), Positives = 50/62 (80%)
Frame = -1 / +1
Query: 878 KRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFI 699
+RKP Q+I+FRDGVSESQF+QVLN+ELQ I +AC ++ + PK T+I+AQKNHHTK F
Sbjct: 100 ERKPQQMIVFRDGVSESQFDQVLNVELQAIYKACNHIEAGYKPKITMIVAQKNHHTKLFP 279
Query: 698 PG 693
G
Sbjct: 280 GG 285
Score = 78.0 bits (164), Expect(3) = 2e-028
Identities = 49/103 (47%), Positives = 55/103 (53%)
Frame = +1 / -3
Query: 388 DEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPISSCR 567
+ VS+ SS NC W AA+ A* +GAT ++AVVLL Y LK SS
Sbjct: 593 EAVSERSSALRNCCIWLAAKCA*FIGATEEIAVVLL*YT*DKAWTRICRSSTLKSFSSSN 414
Query: 568 M***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFP 696
** VG VPI PA H KSKFLG Q ST VP TL G P
Sbjct: 413 T**WVGRDVPIGPA*GHKKKSKFLGWQIWESTIVPGCTLPGPP 285
Score = 51.5 bits (106), Expect(3) = 2e-028
Identities = 30/60 (50%), Positives = 33/60 (55%)
Frame = +1 / -3
Query: 694 PGMKNLVW*FFWAMINVNLGFHFSSRNLQASMICCNSMFSTWLN*LSLTPSLKMMTWSGF 873
P + V *FF A I V LG +S L A I CNS F TW N SLTPSLK + GF
Sbjct: 284 PPGNSFV**FFCATIIVILGL*PASM*LHALYIACNSTFRTWSNCDSLTPSLKTIICCGF 105
Score = 35.0 bits (70), Expect(3) = 2e-028
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +1 / -3
Query: 295 QQKNMELLTFSCRRGSSWTGTL 360
QQKNM L TF C GSS TG L
Sbjct: 707 QQKNMVLQTFRCSTGSSGTGAL 642
Score = 32.7 bits (65), Expect(2) = 3e-045
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1 / +1
Query: 353 PVQELPRLHEKVRSSMFFC* 294
PV ELP LH V ++MFFC*
Sbjct: 649 PVPELPVLHRNVCNTMFFC* 708
>gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H02_A029 5', mRNA sequence
Length = 706
Score = 171 bits (369), Expect(2) = 5e-045
Identities = 70/112 (62%), Positives = 83/112 (74%)
Frame = -1 / +2
Query: 737 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 558
+I + +H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 179 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 358
Query: 557 EIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
E F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 359 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 514
Score = 106 bits (226), Expect(2) = 2e-025
Identities = 43/72 (59%), Positives = 56/72 (77%)
Frame = -1 / +2
Query: 878 KRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFI 699
+RKP Q+IIFRDGVSESQF+QVLN+ELQ I++AC +++ + PK TLI+AQKNHHTK F
Sbjct: 41 ERKPQQMIIFRDGVSESQFDQVLNVELQAILKACNDIEDGYRPKVTLIVAQKNHHTKLFP 220
Query: 698 PGKPDNVPAGTV 663
G+ + P V
Sbjct: 221 TGQGNVQPGTIV 256
Score = 62.5 bits (130), Expect(3) = 9e-026
Identities = 30/70 (42%), Positives = 44/70 (62%)
Frame = +3 / -1
Query: 666 SASWNIIWLSRNEKFSVVILLGNDQCELGIPFLIKKFASLNDLLQLNVQHLVKLTFTNTV 845
++ W I L+ E+ V+ILL N+QC G ++ L LQLN+Q LVKL FT+++
Sbjct: 253 NSPWLHIALTSWEQLRVMILLRNNQCNFGPITILYVITCLEYSLQLNIQDLVKLRFTDSI 74
Query: 846 PEDDDLVRLS 875
E+D L+RLS
Sbjct: 73 SENDHLLRLS 44
Score = 47.8 bits (98), Expect(3) = 9e-026
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +1 / -2
Query: 379 PWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWY 501
P + VS+ SS F NC W AA+ A* +GAT D+AVVLL Y
Sbjct: 537 PDREAVSESSSAFKNCCIWVAAKCA*FIGATEDIAVVLL*Y 415
Score = 45.1 bits (92), Expect(3) = 9e-026
Identities = 28/47 (59%), Positives = 29/47 (61%)
Frame = +1 / -2
Query: 544 LKPISSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTL 684
+K SS **VG VPI PA H *KSKFLG*Q ST VP TL
Sbjct: 372 VKLFSSSNTW**VGREVPIGPA*GHK*KSKFLG*QI*ASTIVPGCTL 232
Score = 30.4 bits (60), Expect(2) = 5e-045
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1 / +2
Query: 350 VQELPRLHEKVRSSMFFC* 294
V ELP LH+ V +MFFC*
Sbjct: 575 VPELPALHQNVCHTMFFC* 631
Score = 29.9 bits (59), Expect(2) = 2e-025
Identities = 23/69 (33%), Positives = 27/69 (39%)
Frame = -2 / +3
Query: 682 MFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLT 503
M LL + VI T ISTC L L G L + R + M R W L
Sbjct: 234 MCNQGLL*MLRFVILETLISTCALRLAQ*ELHGLLITMYYLMRIVLLWMIFRFWSMHYLM 413
Query: 502 CTKGAQQPY 476
KG Q+ Y
Sbjct: 414 YIKGVQRQY 440
>gb|CO157756.1|CO157756 FLD1_1_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H03_A029 5', mRNA sequence
Length = 441
Score = 174 bits (375), Expect = 8e-043
Identities = 71/112 (63%), Positives = 84/112 (75%)
Frame = -1 / +2
Query: 737 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 558
+I +N+H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 74 LIVAQNNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 253
Query: 557 EIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
E F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 254 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 409
>gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 5', mRNA sequence
Length = 840
Score = 122 bits (262), Expect(2) = 3e-042
Identities = 46/95 (48%), Positives = 62/95 (65%)
Frame = -1 / +2
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
NH + + + N+ GTVVD+ +CHP DFY+CSHAG+ GT+ P HYH+L D+ F
Sbjct: 296 NHRDRNSVDKRSGNILPGTVVDSTICHPTELDFYLCSHAGIHGTSTPAHYHVLWDDNTFT 475
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 476 ADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 580
Score = 70.3 bits (147), Expect(2) = 3e-042
Identities = 29/70 (41%), Positives = 42/70 (60%)
Frame = -1 / +2
Query: 911 ECLIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLII 732
E + + ++ +KP ++I + DGVSE QF QVL EL+ I AC +D + P T I+
Sbjct: 80 EIYLRSFYTATSQKPMRIIFYIDGVSEGQFYQVLLDELEAIRRACMSIDNDYQPPVTFIV 259
Query: 731 AQKNHHTKFF 702
QK HHT+ F
Sbjct: 260 VQKRHHTRLF 289
>gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 3', mRNA sequence
Length = 686
Score = 122 bits (261), Expect(3) = 8e-042
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = -1 / -3
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K NVP GTVVD + HPR FDFY+CSH G++GT++PTHYH+L D+ F+ D+L+ L+++
Sbjct: 474 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 295
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L Y + R T +S+ P+ YA LAA
Sbjct: 294 LCYTFARCTKPVSLAPPVYYADLAA 220
Score = 57.9 bits (120), Expect(3) = 8e-042
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = -1 / -3
Query: 887 SSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTK 708
SS K+ PD+++ FRDGVSESQF+ VLN EL+ + EA P ++ +++H
Sbjct: 681 SSNKKLPDRILFFRDGVSESQFDMVLNQELEALREAVAHFKNYNPPVSFIVAQKRHHTRL 502
Query: 707 FFIPGK 690
F G+
Sbjct: 501 FLGDGE 484
Score = 29.5 bits (58), Expect(3) = 8e-042
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1 / -3
Query: 338 PRLHEKVRSSMFFC*AAGNVSLGFTVLGV 252
P+LH+ V+++MFFC* F LG+
Sbjct: 123 PKLHDGVKNAMFFC*FCYFTVYDFKELGL 37
>gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 3', mRNA sequence
Length = 806
Score = 126 bits (270), Expect(2) = 9e-042
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = -1 / +3
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K N+ GTVVD+ +CHP FDFY+CSHAG+ GT+RP HYH+L D+ F+ D LQ L ++
Sbjct: 183 KSGNILPGTVVDSTICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNN 362
Query: 512 LSYVYQRSTTAISVVAPICYAHLAAAQVGQFIK 414
L Y Y R T ++S+V P YAHLAA + +I+
Sbjct: 363 LCYTYARCTRSVSIVPPAYYAHLAAFRARFYIE 461
Score = 64.8 bits (135), Expect(2) = 9e-042
Identities = 28/56 (50%), Positives = 33/56 (58%)
Frame = -1 / +3
Query: 848 RDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIPGKPDN 681
RDGVSE QF QVL EL+ I AC +DE + P T I+ QK HHT F D+
Sbjct: 3 RDGVSEGQFYQVLLDELEAIHRACMSIDEDYQPPVTFIVVQKRHHTHLFAHNHRDS 170
>gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_A04 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 513
Score = 169 bits (363), Expect = 4e-041
Identities = 68/113 (60%), Positives = 87/113 (76%)
Frame = -1 / +1
Query: 740 LIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILH 561
++ + +H F G P NV GT+VD+++CHPRNFDF++C AG IGT+RPTHYH+L
Sbjct: 121 IVAQKNHHTKLFPGGGGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLL 300
Query: 560 DEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
DE F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF+K + +
Sbjct: 301 DENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFLKAEXL 459
Score = 79.0 bits (166), Expect(2) = 2e-022
Identities = 49/103 (47%), Positives = 55/103 (53%)
Frame = +1 / -2
Query: 388 DEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPISSCR 567
+ VS+ SS NC W AA+ A* +GAT ++AVVLL Y LK SS
Sbjct: 473 EAVSEXSSALRNCCIWLAAKCA*FIGATEEIAVVLL*YT*DKAWTRICRSSTLKSFSSSN 294
Query: 568 M***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFP 696
** VG VPI PA H KSKFLG Q ST VP TL G P
Sbjct: 293 T**WVGRDVPIGPA*GHKKKSKFLGWQIWESTIVPGCTLPGPP 165
Score = 47.8 bits (98), Expect(2) = 2e-022
Identities = 28/53 (52%), Positives = 30/53 (56%)
Frame = +1 / -2
Query: 694 PGMKNLVW*FFWAMINVNLGFHFSSRNLQASMICCNSMFSTWLN*LSLTPSLK 852
P + V *FF A I V LG +S L A I CNS F TW N SLTPSLK
Sbjct: 164 PPGNSFV**FFCATIIVILGL*PASM*LHALYIACNSTFRTWSNCDSLTPSLK 6
>gb|DR100644.1|DR100644 STRR1_66_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_66_D11_A033 3', mRNA sequence
Length = 839
Score = 116 bits (248), Expect(3) = 1e-040
Identities = 45/79 (56%), Positives = 55/79 (69%)
Frame = -1 / -1
Query: 737 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 558
+I + +H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 755 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 576
Query: 557 EIGFNPDDLQELVHSLSYV 501
E F DDLQ LVH+LSYV
Sbjct: 575 ENSFTVDDLQILVHALSYV 519
Score = 58.3 bits (121), Expect(3) = 1e-040
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -1 / -1
Query: 500 YQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
YQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 428 YQRSTTAISSVAPINYAHLAATQMQQFLKADEL 330
Score = 30.9 bits (61), Expect(3) = 1e-040
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1 / -1
Query: 350 VQELPRLHEKVRSSMFFC*AAGN 282
V ELP LH+ V +MFFC* N
Sbjct: 269 VLELPALHQNVCHTMFFC*ILQN 201
>gb|BQ703142.1|BQ703142 NXSI_137_A09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_137_A09 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 489
Score = 166 bits (357), Expect = 3e-040
Identities = 67/108 (62%), Positives = 84/108 (77%)
Frame = -1 / +2
Query: 740 LIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILH 561
++ + +H F G P NV GT+VD+++CHPRNFDF++C AG IGT+RPTHYH+L
Sbjct: 113 IVAQKNHHTKLFPGGGGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLL 292
Query: 560 DEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFI 417
DE F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF+
Sbjct: 293 DENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFL 436
Score = 76.7 bits (161), Expect(2) = 4e-021
Identities = 48/106 (45%), Positives = 54/106 (50%)
Frame = +1 / -1
Query: 379 PWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWYXXXXXXXXXXXXXGLKPIS 558
P + VS+ NC W AA+ A* +GAT ++AVVLL Y LK S
Sbjct: 474 PXREAVSEXXXXXRNCCIWLAAKCA*FIGATEEIAVVLL*YT*DKAWTRICRSSTLKSFS 295
Query: 559 SCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTLSGFP 696
S ** VG VPI PA H KSKFLG Q ST VP TL G P
Sbjct: 294 SSNT**WVGRDVPIGPA*GHKKKSKFLGWQIWESTIVPGCTLPGPP 157
Score = 45.5 bits (93), Expect(2) = 4e-021
Identities = 27/52 (51%), Positives = 29/52 (55%)
Frame = +1 / -1
Query: 694 PGMKNLVW*FFWAMINVNLGFHFSSRNLQASMICCNSMFSTWLN*LSLTPSL 849
P + V *FF A I V LG +S L A I CNS F TW N SLTPSL
Sbjct: 156 PPGNSFV**FFCATIIVILGL*PASM*LHALYIACNSTFRTWSNCDSLTPSL 1
>gb|AW784002.1|AW784002 NXNV_096_G04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_096_G04 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 312
Score = 162 bits (349), Expect = 3e-039
Identities = 64/93 (68%), Positives = 77/93 (82%)
Frame = -1 / +1
Query: 695 GKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVH 516
G P NV GT+VD+++CHPRNFDF++C AG IGT+RPTHYH+L DE F+ DDLQ LVH
Sbjct: 16 GGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLLDENDFSVDDLQILVH 195
Query: 515 SLSYVYQRSTTAISVVAPICYAHLAAAQVGQFI 417
+LSYVYQRSTTAIS VAP YAHLAA+Q+ QF+
Sbjct: 196 ALSYVYQRSTTAISSVAPXXYAHLAASQMQQFL 294
>gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC49 3' end, mRNA sequence
Length = 824
Score = 120 bits (257), Expect(2) = 7e-039
Identities = 43/84 (51%), Positives = 61/84 (72%)
Frame = -1 / +2
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K NVP GTVVD + HPR FDFY+CSH G++GT++PTHYH+L D+ F+ D+L+ L+++
Sbjct: 572 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 751
Query: 512 LSYVYQRSTTAISVVAPICYAHLA 441
L Y + R T +S+ P+ YA LA
Sbjct: 752 LCYTFARCTKPVSLAPPVYYADLA 823
Score = 61.1 bits (127), Expect(2) = 7e-039
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = -1 / +2
Query: 905 LIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQ 726
L+D Y + K+ PD+++ FRDGVSESQF+ VLN EL+ + EA P ++ +
Sbjct: 347 LLDDYFKANKKLPDRILFFRDGVSESQFDMVLNQELEALREAVAHFKNYNPPVSFIVAQK 526
Query: 725 KNHHTKFFIPGK 690
++H F G+
Sbjct: 527 RHHTRLFLGDGE 562
>gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 3', mRNA sequence
Length = 821
Score = 126 bits (269), Expect(3) = 1e-037
Identities = 47/91 (51%), Positives = 66/91 (72%)
Frame = -1 / -3
Query: 686 DNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLS 507
DN+P GTVVD + HPR FDFY+CSH+G+ GT+RPTHYH+L DE F D+LQ+L+++L
Sbjct: 435 DNIPPGTVVDTLITHPREFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLC 256
Query: 506 YVYQRSTTAISVVAPICYAHLAAAQVGQFIK 414
Y + R T +S+V YAHLAA + +++
Sbjct: 255 YTFVRCTKPVSLVPLAYYAHLAAYRARLYLE 163
Score = 48.3 bits (99), Expect(3) = 1e-037
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = -1 / -3
Query: 905 LIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACK 774
L++ Y K+ P +++ FRDGVSE QF +VL EL+ + ACK
Sbjct: 756 LLEDYRDEIKQLPKRILFFRDGVSEGQFYKVLEEELRALKAACK 625
Score = 26.3 bits (51), Expect(3) = 1e-037
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1 / -3
Query: 341 LPRLHEKVRSSMFFC* 294
LP+L+E V+ MF+C*
Sbjct: 51 LPKLNENVKKLMFYC* 4
>gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 5', mRNA sequence
Length = 844
Score = 119 bits (254), Expect(3) = 2e-037
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = -1 / +2
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P HY++L DE GF P+D+Q L +
Sbjct: 392 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 571
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L + Y R T ++S+V YAHLAA
Sbjct: 572 LCFTYARCTRSVSIVPACYYAHLAA 646
Score = 41.4 bits (84), Expect(3) = 2e-037
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -1 / +2
Query: 905 LIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFL 768
L+ + KP++++ +RDGVS+ QF VLN EL + +A + L
Sbjct: 101 LLSSFQERCNTKPERILYYRDGVSDGQFEMVLNNELGALKKAIEAL 238
Score = 34.5 bits (69), Expect(3) = 2e-037
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1 / +2
Query: 755 NPKFTLIIAQKNHHTKFF 702
+PK T I+ QK HHT+FF
Sbjct: 308 SPKVTFIVVQKRHHTRFF 361
>gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 3', mRNA sequence
Length = 857
Score = 129 bits (277), Expect(2) = 7e-036
Identities = 49/103 (47%), Positives = 69/103 (66%)
Frame = -1 / +1
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
NH + + + N+ GTVVD+ +CHP FDFY+CSHAG+ GT+RP HYH+L D+ F+
Sbjct: 112 NHRDRNSVDKRSGNILPGTVVDSTICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFS 291
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIK 414
D LQ L ++L Y Y R T ++S+V P YAHLAA + +I+
Sbjct: 292 ADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYIE 420
Score = 41.8 bits (85), Expect(2) = 7e-036
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1 / +1
Query: 803 ELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFF 702
EL+ I AC +D + P T I+ QK HHT+ F
Sbjct: 4 ELEAIRRACMSIDNDYQPPVTXIVVQKRHHTRLF 105
>gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 5', mRNA sequence
Length = 796
Score = 130 bits (278), Expect(2) = 1e-035
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = -1 / +3
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 234 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 413
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 414 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 518
Score = 40.5 bits (82), Expect(2) = 1e-035
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -1 / +1
Query: 872 KPDQVIIFRDGVSESQFNQVLNIEL 798
KP+++I +RDGVSE QF QVL EL
Sbjct: 61 KPERIIFYRDGVSEGQFYQVLLYEL 135
>gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_B02_A029 5', mRNA sequence
Length = 700
Score = 134 bits (287), Expect = 1e-030
Identities = 53/87 (60%), Positives = 63/87 (72%)
Frame = -1 / +2
Query: 737 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 558
+I + +H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 224 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 403
Query: 557 EIGFNPDDLQELVHSLSYVYQRSTTAI 477
E F DDLQ LVH+LSYVYQRSTTAI
Sbjct: 404 ENSFTVDDLQILVHALSYVYQRSTTAI 484
Score = 106 bits (226), Expect(4) = 2e-035
Identities = 43/72 (59%), Positives = 56/72 (77%)
Frame = -1 / +2
Query: 878 KRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFI 699
+RKP Q+IIFRDGVSESQF+QVLN+ELQ I++AC +++ + PK TLI+AQKNHHTK F
Sbjct: 86 ERKPQQMIIFRDGVSESQFDQVLNVELQAILKACNDIEDGYRPKVTLIVAQKNHHTKLFP 265
Query: 698 PGKPDNVPAGTV 663
G+ + P V
Sbjct: 266 TGQGNVQPGTIV 301
Score = 62.5 bits (130), Expect(3) = 8e-023
Identities = 30/70 (42%), Positives = 44/70 (62%)
Frame = +3 / -1
Query: 666 SASWNIIWLSRNEKFSVVILLGNDQCELGIPFLIKKFASLNDLLQLNVQHLVKLTFTNTV 845
++ W I L+ E+ V+ILL N+QC G ++ L LQLN+Q LVKL FT+++
Sbjct: 298 NSPWLHIALTSWEQLRVMILLRNNQCNFGPITILYVITCLEYSLQLNIQDLVKLRFTDSI 119
Query: 846 PEDDDLVRLS 875
E+D L+RLS
Sbjct: 118 SENDHLLRLS 89
Score = 45.1 bits (92), Expect(3) = 8e-023
Identities = 28/47 (59%), Positives = 29/47 (61%)
Frame = +1 / -2
Query: 544 LKPISSCRM***VGLVVPIIPACEHM*KSKFLG*QTLLSTTVPAGTL 684
+K SS **VG VPI PA H *KSKFLG*Q ST VP TL
Sbjct: 417 VKLFSSSNTW**VGREVPIGPA*GHK*KSKFLG*QI*ASTIVPGCTL 277
Score = 41.4 bits (84), Expect(4) = 2e-035
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -1 / +3
Query: 503 VYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 402
+Y + S VAPI YAHLAA Q+ QF+K DE+
Sbjct: 456 MYIKGVQRQSSVAPINYAHLAATQMQQFLKADEL 557
Score = 37.7 bits (76), Expect(3) = 8e-023
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +1 / -1
Query: 379 PWLDEVSDISSNFMNCPTWAAARWA*QMGATTDMAVVLLWY 501
P + VS+ SS F NC W AA+ A* +GAT D L Y
Sbjct: 580 PDREAVSESSSAFKNCCIWVAAKCA*FIGATEDCRCTPLIY 458
Score = 30.4 bits (60), Expect(4) = 2e-035
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1 / +3
Query: 350 VQELPRLHEKVRSSMFFC* 294
V ELP LH+ V +MFFC*
Sbjct: 618 VPELPALHQNVCHTMFFC* 674
Score = 27.2 bits (53), Expect(4) = 2e-035
Identities = 22/67 (32%), Positives = 26/67 (38%)
Frame = -2 / +3
Query: 682 MFQLALLLTTKSVIQGTSISTCVHMLE*LGLPGQLTITSCMTR*ASILMTCRSWCTRSLT 503
M LL + VI T ISTC L L G L + R + M R W L
Sbjct: 279 MCNQGLL*MLRFVILETLISTCALRLAQ*ELHGLLITMYYLMRIVLLWMIFRFWSMHYLM 458
Query: 502 CTKGAQQ 482
KG Q+
Sbjct: 459 YIKGVQR 479
>gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clone RS34D06, mRNA sequence
Length = 646
Score = 100 bits (213), Expect(3) = 2e-032
Identities = 39/72 (54%), Positives = 48/72 (66%)
Frame = -1 / +3
Query: 653 KVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAIS 474
K HP DF +CSHAG+ GT+RP HYH+L DE F D LQ L ++L Y Y R T ++S
Sbjct: 351 KFGHPTELDFNLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVS 530
Query: 473 VVAPICYAHLAA 438
+V P YAHLAA
Sbjct: 531 IVTPAYYAHLAA 566
Score = 40.5 bits (82), Expect(3) = 2e-032
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -1 / +1
Query: 872 KPDQVIIFRDGVSESQFNQVLNIEL 798
KP+++I +RDGVSE QF QVL EL
Sbjct: 106 KPERIIFYRDGVSEGQFYQVLLYEL 180
Score = 36.8 bits (74), Expect(3) = 2e-032
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1 / +2
Query: 791 IIEACKFLDEKWNPKFTLIIAQKNHHTKFF 702
I +AC L+ + P T ++ QK HHT+ F
Sbjct: 188 IRKACASLEPNYQPPVTFVVVQKRHHTRIF 277
>gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D08_A029 5', mRNA sequence
Length = 797
Score = 130 bits (278), Expect(2) = 7e-032
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = -1 / +3
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 492 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 671
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 672 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 776
Score = 30.9 bits (61), Expect(2) = 7e-032
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1 / +3
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFK 945
++WP ++KY V Q+ + E+I L+K
Sbjct: 150 QDWPEVTKYAGLVCAQAHRQELIQDLYK 233
>gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 5', mRNA sequence
Length = 831
Score = 130 bits (278), Expect(2) = 7e-032
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = -1 / +2
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 428 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 607
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 608 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 712
Score = 30.9 bits (61), Expect(2) = 7e-032
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1 / +2
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFK 945
++WP ++KY V Q+ + E+I L+K
Sbjct: 86 QDWPEVTKYAGLVCAQAHRQELIQDLYK 169
>gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_E04_A029 5', mRNA sequence
Length = 924
Score = 130 bits (278), Expect(2) = 8e-032
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = -1 / +3
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 390 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 569
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 570 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 674
Score = 30.9 bits (61), Expect(2) = 8e-032
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1 / +3
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFK 945
++WP ++KY V Q+ + E+I L+K
Sbjct: 48 QDWPEVTKYAGLVCAQAHRQELIQDLYK 131
>gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clone RS66B04, mRNA sequence
Length = 557
Score = 119 bits (254), Expect(2) = 1e-030
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = -1 / +1
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P HY++L DE GF P+D+Q L +
Sbjct: 163 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 342
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L + Y R T ++S+V YAHLAA
Sbjct: 343 LCFTYARCTRSVSIVPACYYAHLAA 417
Score = 34.5 bits (69), Expect(2) = 1e-030
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1 / +1
Query: 755 NPKFTLIIAQKNHHTKFF 702
+PK T I+ QK HHT+FF
Sbjct: 79 SPKVTFIVVQKRHHTRFF 132
>gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_D07_A034 5', mRNA sequence
Length = 533
Score = 119 bits (254), Expect(2) = 1e-030
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = -1 / +3
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P HY++L DE GF P+D+Q L +
Sbjct: 192 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 371
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L + Y R T ++S+V YAHLAA
Sbjct: 372 LCFTYARCTRSVSIVPACYYAHLAA 446
Score = 34.5 bits (69), Expect(2) = 1e-030
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1 / +3
Query: 755 NPKFTLIIAQKNHHTKFF 702
+PK T I+ QK HHT+FF
Sbjct: 108 SPKVTFIVVQKRHHTRFF 161
>gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 5', mRNA sequence
Length = 793
Score = 126 bits (269), Expect(2) = 4e-030
Identities = 47/91 (51%), Positives = 66/91 (72%)
Frame = -1 / -3
Query: 686 DNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLS 507
DN+P GTVVD + HPR FDFY+CSH+G+ GT+RPTHYH+L DE F D+LQ+L+++L
Sbjct: 566 DNIPPGTVVDTLITHPREFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLC 387
Query: 506 YVYQRSTTAISVVAPICYAHLAAAQVGQFIK 414
Y + R T +S+V YAHLAA + +++
Sbjct: 386 YTFVRCTKPVSLVPLAYYAHLAAYRARLYLE 294
Score = 26.3 bits (51), Expect(2) = 4e-030
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1 / -3
Query: 341 LPRLHEKVRSSMFFC* 294
LP+L+E V+ MF+C*
Sbjct: 182 LPKLNENVKKLMFYC* 135
>gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C07_A029 5', mRNA sequence
Length = 741
Score = 122 bits (261), Expect(2) = 5e-030
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = -1 / +2
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K NVP GTVVD + HPR FDFY+CSH G++GT++PTHYH+L D+ F+ D+L+ L+++
Sbjct: 77 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 256
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L Y + R T +S+ P+ YA LAA
Sbjct: 257 LCYTFARCTKPVSLAPPVYYADLAA 331
Score = 29.5 bits (58), Expect(2) = 5e-030
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1 / +2
Query: 338 PRLHEKVRSSMFFC*AAGNVSLGFTVLGV 252
P+LH+ V+++MFFC* F LG+
Sbjct: 428 PKLHDGVKNAMFFC*FCYFTVYDFKELGL 514
>gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 3', mRNA sequence
Length = 818
Score = 119 bits (254), Expect(2) = 9e-030
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = -1 / +1
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P HY++L DE GF P+D+Q L +
Sbjct: 109 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 288
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L + Y R T ++S+V YAHLAA
Sbjct: 289 LCFTYARCTRSVSIVPACYYAHLAA 363
Score = 31.8 bits (63), Expect(2) = 9e-030
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1 / +1
Query: 755 NPKFTLIIAQKNHHTKFF 702
+PK T I+ Q HHT+FF
Sbjct: 25 SPKVTFIVVQXRHHTRFF 78
>gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 5', mRNA sequence
Length = 722
Score = 121 bits (258), Expect(2) = 1e-029
Identities = 43/82 (52%), Positives = 61/82 (74%)
Frame = -1 / -2
Query: 683 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 504
NVP GTVVD + HPR FDFY+CSH G++GT++PTHYH+L D+ F+ D+L+ L+++L Y
Sbjct: 718 NVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCY 539
Query: 503 VYQRSTTAISVVAPICYAHLAA 438
+ R T +S+ P+ YA LAA
Sbjct: 538 TFARCTKPVSLAPPVYYADLAA 473
Score = 29.5 bits (58), Expect(2) = 1e-029
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1 / -2
Query: 338 PRLHEKVRSSMFFC*AAGNVSLGFTVLGV 252
P+LH+ V+++MFFC* F LG+
Sbjct: 376 PKLHDGVKNAMFFC*FCYFTVYDFKELGL 290
>gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_H03_A029 5', mRNA sequence
Length = 685
Score = 119 bits (254), Expect(2) = 2e-029
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = -1 / -3
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P HY++L DE GF P+D+Q L +
Sbjct: 605 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 426
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L + Y R T ++S+V YAHLAA
Sbjct: 425 LCFTYARCTRSVSIVPACYYAHLAA 351
Score = 30.9 bits (61), Expect(2) = 2e-029
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1 / -3
Query: 749 KFTLIIAQKNHHTKFF 702
K T I+ QK HHT+FF
Sbjct: 683 KVTFIVVQKRHHTRFF 636
>gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_E06_A029 3', mRNA sequence
Length = 900
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = -1 / +3
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 156 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 335
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 336 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 440
>gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 5', mRNA sequence
Length = 845
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = -1 / +2
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 257 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 436
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 437 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 541
>gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 3', mRNA sequence
Length = 871
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = -1 / +3
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 111 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 290
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 291 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 395
>gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 3', mRNA sequence
Length = 823
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = -1 / +2
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 68 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 247
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 248 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 352
>gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 3', mRNA sequence
Length = 759
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = -1 / +3
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 15 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 194
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 195 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 299
>gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 5', mRNA sequence
Length = 626
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = -1 / +2
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 200 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 379
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 380 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 484
>gb|DR095364.1|DR095364 STRR1_20_C06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 5', mRNA sequence
Length = 870
Score = 75.3 bits (158), Expect(3) = 3e-029
Identities = 31/65 (47%), Positives = 40/65 (61%)
Frame = -1 / +2
Query: 875 RKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFIP 696
+KP ++I +RDGVSE QF QVL EL+ I AC +DE + P T I+ QK HHT F
Sbjct: 572 QKPKRIIFYRDGVSEGQFYQVLLDELEAIHRACMSIDEDYQPPVTFIVVQKRHHTHLFAH 751
Query: 695 GKPDN 681
D+
Sbjct: 752 NHRDS 766
Score = 56.5 bits (117), Expect(3) = 3e-029
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = -1 / +2
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAG 603
K N+ GTVVD+ +CHP FDFY+CSHAG
Sbjct: 779 KSGNILPGTVVDSTICHPTEFDFYLCSHAG 868
Score = 35.4 bits (71), Expect(3) = 3e-029
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1 / +2
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFKPRETDDDGLIRECLI 900
++WP ++KY V Q+ + EMI+ LFK + G I +I
Sbjct: 407 QDWPEVTKYVGLVSAQAHRQEMIEDLFKVVKDPKRGAIIRSMI 535
>gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A07 5' similar to Arabidopsis thaliana
sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 128 bits (274), Expect = 7e-029
Identities = 48/82 (58%), Positives = 60/82 (73%)
Frame = -1 / +2
Query: 683 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 504
N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F D LQ L ++L Y
Sbjct: 74 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 253
Query: 503 VYQRSTTAISVVAPICYAHLAA 438
Y R T ++S+V P YAHLAA
Sbjct: 254 TYARCTRSVSIVPPAYYAHLAA 319
>gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_B11_A021 3', mRNA
sequence
Length = 645
Score = 128 bits (274), Expect = 7e-029
Identities = 48/82 (58%), Positives = 60/82 (73%)
Frame = -1 / +2
Query: 683 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 504
N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F D LQ L ++L Y
Sbjct: 23 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 202
Query: 503 VYQRSTTAISVVAPICYAHLAA 438
Y R T ++S+V P YAHLAA
Sbjct: 203 TYARCTRSVSIVPPAYYAHLAA 268
>gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 3', mRNA sequence
Length = 755
Score = 128 bits (274), Expect = 7e-029
Identities = 49/95 (51%), Positives = 63/95 (66%)
Frame = -1 / +3
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 6 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 185
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++ Y Y R T ++S+V P YAHLAA
Sbjct: 186 ADGLQSLTNNFCYTYARCTRSVSIVPPAYYAHLAA 290
>gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 3', mRNA sequence
Length = 741
Score = 128 bits (274), Expect = 7e-029
Identities = 48/82 (58%), Positives = 60/82 (73%)
Frame = -1 / +1
Query: 683 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 504
N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F D LQ L ++L Y
Sbjct: 31 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 210
Query: 503 VYQRSTTAISVVAPICYAHLAA 438
Y R T ++S+V P YAHLAA
Sbjct: 211 TYARCTRSVSIVPPAYYAHLAA 276
>gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9201r, mRNA sequence
Length = 580
Score = 127 bits (273), Expect = 1e-028
Identities = 49/95 (51%), Positives = 63/95 (66%)
Frame = -1 / +1
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTV D+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 73 NNHQDRNATDRSGNILPGTVXDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 252
Query: 542 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 438
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 253 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 357
>gb|CF478983.1|CF478983 RTWW3_21_F03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F03_A022 3', mRNA sequence
Length = 608
Score = 113 bits (241), Expect(2) = 3e-028
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = -1 / +3
Query: 599 IGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQF 420
IGT+RPTHYH+L DE F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF
Sbjct: 3 IGTSRPTHYHVLLDENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQF 182
Query: 419 IKFDEM 402
+K +++
Sbjct: 183 LKAEDL 200
Score = 32.7 bits (65), Expect(2) = 3e-028
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1 / +3
Query: 353 PVQELPRLHEKVRSSMFFC* 294
PV ELP LH V ++MFFC*
Sbjct: 270 PVPELPVLHRNVCNTMFFC* 329
>gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV063_D02 5' similar to Arabidopsis thaliana
sequence At1g69440 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 615
Score = 110 bits (235), Expect(3) = 6e-028
Identities = 41/85 (48%), Positives = 59/85 (69%)
Frame = -1 / +1
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K NVP GTVVD + PR FD Y+CSH G++GT++ THYH+L D+ F+ D+L+ L+++
Sbjct: 211 KSGNVPPGTVVDTVIVRPRQFDGYLCSHNGLLGTSKRTHYHVLWDDNRFSSDELETLINN 390
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L Y + R T +S+ P+ YA LAA
Sbjct: 391 LCYTFARCTKPVSLAPPVYYADLAA 465
Score = 28.6 bits (56), Expect(3) = 6e-028
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1 / +3
Query: 842 GVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHH 714
GVSESQF VLN EL + EA P ++ + H
Sbjct: 48 GVSESQFYMVLNQEL*ALREAVAHFKNXSXPVSFIVTHXETSH 176
Score = 23.5 bits (45), Expect(3) = 6e-028
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -1 / +1
Query: 341 LPRLHEKVRSSMFFC* 294
+P+LH+ V++ +F C*
Sbjct: 559 VPKLHDGVKNXVFXC* 606
>gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_F12_A034 3', mRNA sequence
Length = 746
Score = 111 bits (238), Expect(2) = 5e-026
Identities = 39/77 (50%), Positives = 56/77 (72%)
Frame = -1 / +1
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K NVP GTVVD + HPR FDFY+CSH G++GT++PTHYH+L D+ F+ D+L+ L+++
Sbjct: 25 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 204
Query: 512 LSYVYQRSTTAISVVAP 462
L Y + R T +S+ P
Sbjct: 205 LCYTFARCTKPVSLAPP 255
Score = 29.5 bits (58), Expect(2) = 5e-026
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1 / +2
Query: 338 PRLHEKVRSSMFFC*AAGNVSLGFTVLGV 252
P+LH+ V+++MFFC* F LG+
Sbjct: 377 PKLHDGVKNAMFFC*FCYFTVYDFKELGL 463
>gb|CX651789.1|CX651789 COLD1_54_G01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_G01_A029 5', mRNA sequence
Length = 652
Score = 107 bits (228), Expect(2) = 8e-026
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = -1 / -1
Query: 587 RPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFD 408
RPTHYH+L DE F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K D
Sbjct: 652 RPTHYHVLLDENSFIVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKAD 473
Query: 407 EM 402
E+
Sbjct: 472 EL 467
Score = 30.4 bits (60), Expect(2) = 8e-026
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1 / -1
Query: 350 VQELPRLHEKVRSSMFFC* 294
V ELP LH+ V +MFFC*
Sbjct: 406 VPELPALHQNVCHTMFFC* 350
>gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_E04_A029 5', mRNA sequence
Length = 643
Score = 114 bits (243), Expect = 1e-024
Identities = 43/85 (50%), Positives = 58/85 (68%)
Frame = -1 / -1
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 513
K N+ GTVVD+ +C P+ FDFY CSHAG+ GT++P HY++ DE GF P+D+Q L +
Sbjct: 607 KNGNLLPGTVVDSVICQPKIFDFYFCSHAGIKGTSKPAHYNVFQDENGFPPNDIQRLTND 428
Query: 512 LSYVYQRSTTAISVVAPICYAHLAA 438
L + Y R T +S+V YAHLAA
Sbjct: 427 LCFTYARCTRFVSIVPACYYAHLAA 353
>gb|DR012422.1|DR012422 HEAT1_12_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_12_E12_A029 5', mRNA sequence
Length = 480
Score = 59.7 bits (124), Expect(4) = 3e-024
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = -1 / +2
Query: 692 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRP 582
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P
Sbjct: 323 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKP 433
Score = 41.4 bits (84), Expect(4) = 3e-024
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -1 / +2
Query: 905 LIDFYTSSGKRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFL 768
L+ + KP++++ +RDGVS+ QF VLN EL + +A + L
Sbjct: 32 LLSSFQERCNTKPERILYYRDGVSDGQFEMVLNNELGALKKAIEAL 169
Score = 34.5 bits (69), Expect(4) = 3e-024
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1 / +2
Query: 755 NPKFTLIIAQKNHHTKFF 702
+PK T I+ QK HHT+FF
Sbjct: 239 SPKVTFIVVQKRHHTRFF 292
Score = 31.8 bits (63), Expect(4) = 3e-024
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1 / +3
Query: 584 PTHYHILHDEIGFNPD 537
PTHY++L DE GF P+
Sbjct: 432 PTHYNVLQDENGFTPN 479
>gb|CF663944.1|CF663944 RTCNT1_6_E05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_E05_A029 3', mRNA sequence
Length = 401
Score = 101 bits (216), Expect(2) = 4e-024
Identities = 39/62 (62%), Positives = 50/62 (80%)
Frame = -1 / -3
Query: 878 KRKPDQVIIFRDGVSESQFNQVLNIELQQIIEACKFLDEKWNPKFTLIIAQKNHHTKFFI 699
+RKP Q+I+FRDGVSESQF+QVLN+ELQ I +AC ++ + PK T+I+AQKNHHTK F
Sbjct: 261 ERKPQQMIVFRDGVSESQFDQVLNVELQAIYKACNHIEAGYKPKITMIVAQKNHHTKLFP 82
Query: 698 PG 693
G
Sbjct: 81 GG 76
Score = 30.4 bits (60), Expect(2) = 4e-024
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1 / -3
Query: 983 QSPKMEMIDSLFKPRETDDD 924
QSPK+EMI++L+KP + D
Sbjct: 384 QSPKVEMIEALYKPLPSGKD 325
>gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_E12_A022 5', mRNA
sequence
Length = 748
Score = 98.7 bits (209), Expect(2) = 2e-022
Identities = 37/71 (52%), Positives = 48/71 (67%)
Frame = -1 / +3
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 531 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 710
Query: 542 PDDLQELVHSL 510
D LQ L ++L
Sbjct: 711 ADGLQSLTNNL 743
Score = 30.9 bits (61), Expect(2) = 2e-022
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1 / +3
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFK 945
++WP ++KY V Q+ + E+I L+K
Sbjct: 189 QDWPEVTKYAGLVCAQAHRQELIQDLYK 272
>gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 5', mRNA sequence
Length = 779
Score = 98.7 bits (209), Expect(2) = 2e-022
Identities = 37/71 (52%), Positives = 48/71 (67%)
Frame = -1 / +1
Query: 722 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 543
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 565 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 744
Query: 542 PDDLQELVHSL 510
D LQ L ++L
Sbjct: 745 ADGLQSLTNNL 777
Score = 30.9 bits (61), Expect(2) = 2e-022
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1 / +1
Query: 1028 REWPLISKYRASVRTQSPKMEMIDSLFK 945
++WP ++KY V Q+ + E+I L+K
Sbjct: 223 QDWPEVTKYAGLVCAQAHRQELIQDLYK 306
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 616,441,907
Number of Sequences: 355925
Number of extensions: 9526436
Number of successful extensions: 54377
Number of sequences better than 1.0e-020: 59
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 16336324600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)