TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.1
(867 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus add... 171 2e-045
gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered lo... 170 2e-045
gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinu... 171 4e-045
gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus add... 171 5e-045
gb|CO157756.1|CO157756 FLD1_1_H03.g1_A029 Root flooded Pinu... 174 6e-043
gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side ... 169 3e-041
gb|DR100644.1|DR100644 STRR1_66_D11.b1_A033 Stem Response R... 116 1e-040
gb|BQ703142.1|BQ703142 NXSI_137_A09_F NXSI (Nsf Xylem Side ... 166 2e-040
gb|AW784002.1|AW784002 NXNV_096_G04_F Nsf Xylem Normal wood... 162 2e-039
gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pin... 134 3e-033
gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response R... 129 5e-032
gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pin... 119 1e-030
gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clon... 119 1e-030
gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch... 119 1e-030
gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated wi... 126 3e-030
gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated wi... 126 3e-030
gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response R... 122 4e-030
gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pin... 119 7e-030
gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus pota... 122 7e-030
gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus... 122 7e-030
gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus ni... 119 1e-029
gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control P... 130 2e-029
gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus pota... 130 2e-029
gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus pota... 130 2e-029
gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus pota... 130 2e-029
gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus pota... 130 2e-029
gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus pota... 130 2e-029
gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch... 130 2e-029
gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch... 130 2e-029
gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus adde... 130 2e-029
gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus ph... 130 2e-029
gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus... 121 2e-029
gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side ... 128 5e-029
gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine ro... 128 5e-029
gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus pota... 128 5e-029
gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus adde... 128 5e-029
gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9... 127 8e-029
gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response R... 126 2e-028
gb|CF478983.1|CF478983 RTWW3_21_F03.b1_A022 Well-watered lo... 113 2e-028
gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch... 111 1e-026
gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo li... 120 1e-026
gb|CX651789.1|CX651789 COLD1_54_G01.g1_A029 Root cold Pinus... 107 7e-026
gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root w... 110 8e-025
gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus pota... 114 1e-024
gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clon... 100 3e-023
>gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 3', mRNA sequence
Length = 848
Score = 171 bits (369), Expect(2) = 2e-045
Identities = 70/112 (62%), Positives = 83/112 (74%)
Frame = +1 / +2
Query: 136 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 315
+I + +H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 59 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 238
Query: 316 EIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 471
E F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 239 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 394
Score = 31.3 bits (62), Expect(2) = 2e-045
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1 / +2
Query: 523 VQELPRLHEKVRSSMFFC*AAGN 591
V ELP LH+ V +MFFC* N
Sbjct: 455 VPELPALHQNVCHTMFFC*ILQN 523
>gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F03_A022 5', mRNA sequence
Length = 736
Score = 170 bits (366), Expect(2) = 2e-045
Identities = 68/113 (60%), Positives = 88/113 (77%)
Frame = +1 / +1
Query: 133 LIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILH 312
++ + +H F G P NV GT+VD+++CHPRNFDF++C AG IGT+RPTHYH+L
Sbjct: 241 IVAQKNHHTKLFPGGGGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLL 420
Query: 313 DEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 471
DE F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF+K +++
Sbjct: 421 DENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFLKAEDL 579
Score = 32.7 bits (65), Expect(2) = 2e-045
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1 / +1
Query: 520 PVQELPRLHEKVRSSMFFC* 579
PV ELP LH V ++MFFC*
Sbjct: 649 PVPELPVLHRNVCNTMFFC* 708
>gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H02_A029 5', mRNA sequence
Length = 706
Score = 171 bits (369), Expect(2) = 4e-045
Identities = 70/112 (62%), Positives = 83/112 (74%)
Frame = +1 / +2
Query: 136 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 315
+I + +H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 179 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 358
Query: 316 EIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 471
E F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 359 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 514
Score = 30.4 bits (60), Expect(2) = 4e-045
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1 / +2
Query: 523 VQELPRLHEKVRSSMFFC* 579
V ELP LH+ V +MFFC*
Sbjct: 575 VPELPALHQNVCHTMFFC* 631
>gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 5', mRNA sequence
Length = 830
Score = 171 bits (369), Expect(2) = 5e-045
Identities = 70/112 (62%), Positives = 83/112 (74%)
Frame = +1 / +2
Query: 136 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 315
+I + +H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 380 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 559
Query: 316 EIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 471
E F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 560 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 715
Score = 29.9 bits (59), Expect(2) = 5e-045
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1 / +2
Query: 523 VQELPRLHEKVRSSMFFC 576
V ELP LH+ V +MFFC
Sbjct: 776 VPELPALHQNVCHTMFFC 829
>gb|CO157756.1|CO157756 FLD1_1_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H03_A029 5', mRNA sequence
Length = 441
Score = 174 bits (375), Expect = 6e-043
Identities = 71/112 (63%), Positives = 84/112 (75%)
Frame = +1 / +2
Query: 136 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 315
+I +N+H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 74 LIVAQNNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 253
Query: 316 EIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 471
E F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 254 ENSFTVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKADEL 409
>gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_A04 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 513
Score = 169 bits (363), Expect = 3e-041
Identities = 68/113 (60%), Positives = 87/113 (76%)
Frame = +1 / +1
Query: 133 LIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILH 312
++ + +H F G P NV GT+VD+++CHPRNFDF++C AG IGT+RPTHYH+L
Sbjct: 121 IVAQKNHHTKLFPGGGGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLL 300
Query: 313 DEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 471
DE F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF+K + +
Sbjct: 301 DENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFLKAEXL 459
>gb|DR100644.1|DR100644 STRR1_66_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_66_D11_A033 3', mRNA sequence
Length = 839
Score = 116 bits (248), Expect(3) = 1e-040
Identities = 45/79 (56%), Positives = 55/79 (69%)
Frame = +1 / -1
Query: 136 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 315
+I + +H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 755 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 576
Query: 316 EIGFNPDDLQELVHSLSYV 372
E F DDLQ LVH+LSYV
Sbjct: 575 ENSFTVDDLQILVHALSYV 519
Score = 58.3 bits (121), Expect(3) = 1e-040
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +1 / -1
Query: 373 YQRSTTAISVVAPICYAHLAAAQVGQFIKFDEM 471
YQRSTTAIS VAPI YAHLAA Q+ QF+K DE+
Sbjct: 428 YQRSTTAISSVAPINYAHLAATQMQQFLKADEL 330
Score = 30.9 bits (61), Expect(3) = 1e-040
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1 / -1
Query: 523 VQELPRLHEKVRSSMFFC*AAGN 591
V ELP LH+ V +MFFC* N
Sbjct: 269 VLELPALHQNVCHTMFFC*ILQN 201
>gb|BQ703142.1|BQ703142 NXSI_137_A09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_137_A09 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 489
Score = 166 bits (357), Expect = 2e-040
Identities = 67/108 (62%), Positives = 84/108 (77%)
Frame = +1 / +2
Query: 133 LIIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILH 312
++ + +H F G P NV GT+VD+++CHPRNFDF++C AG IGT+RPTHYH+L
Sbjct: 113 IVAQKNHHTKLFPGGGGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLL 292
Query: 313 DEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFI 456
DE F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF+
Sbjct: 293 DENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQFL 436
>gb|AW784002.1|AW784002 NXNV_096_G04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_096_G04 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 312
Score = 162 bits (349), Expect = 2e-039
Identities = 64/93 (68%), Positives = 77/93 (82%)
Frame = +1 / +1
Query: 178 GKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVH 357
G P NV GT+VD+++CHPRNFDF++C AG IGT+RPTHYH+L DE F+ DDLQ LVH
Sbjct: 16 GGPGNVQPGTIVDSQICHPRNFDFFLCPQAGPIGTSRPTHYHVLLDENDFSVDDLQILVH 195
Query: 358 SLSYVYQRSTTAISVVAPICYAHLAAAQVGQFI 456
+LSYVYQRSTTAIS VAP YAHLAA+Q+ QF+
Sbjct: 196 ALSYVYQRSTTAISSVAPXXYAHLAASQMQQFL 294
>gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_B02_A029 5', mRNA sequence
Length = 700
Score = 134 bits (287), Expect(2) = 3e-033
Identities = 53/87 (60%), Positives = 63/87 (72%)
Frame = +1 / +2
Query: 136 IIAQKNHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHD 315
+I + +H P NV GT+VD ++CHPRNFDFY+C AG IGT+RPTHYH+L D
Sbjct: 224 LIVAQKNHHTKLFPTGQGNVQPGTIVDAQICHPRNFDFYLCPQAGPIGTSRPTHYHVLLD 403
Query: 316 EIGFNPDDLQELVHSLSYVYQRSTTAI 396
E F DDLQ LVH+LSYVYQRSTTAI
Sbjct: 404 ENSFTVDDLQILVHALSYVYQRSTTAI 484
Score = 30.4 bits (60), Expect(2) = 3e-033
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1 / +3
Query: 523 VQELPRLHEKVRSSMFFC* 579
V ELP LH+ V +MFFC*
Sbjct: 618 VPELPALHQNVCHTMFFC* 674
>gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 3', mRNA sequence
Length = 857
Score = 129 bits (277), Expect(2) = 5e-032
Identities = 49/103 (47%), Positives = 69/103 (66%)
Frame = +1 / +1
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
NH + + + N+ GTVVD+ +CHP FDFY+CSHAG+ GT+RP HYH+L D+ F+
Sbjct: 112 NHRDRNSVDKRSGNILPGTVVDSTICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFS 291
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIK 459
D LQ L ++L Y Y R T ++S+V P YAHLAA + +I+
Sbjct: 292 ADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYIE 420
Score = 28.6 bits (56), Expect(2) = 5e-032
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1 / +1
Query: 112 EMNPKFTLIIAQKNHHTKFF 171
+ P T I+ QK HHT+ F
Sbjct: 46 DYQPPVTXIVVQKRHHTRLF 105
>gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 5', mRNA sequence
Length = 844
Score = 119 bits (254), Expect(2) = 1e-030
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +1 / +2
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P HY++L DE GF P+D+Q L +
Sbjct: 392 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 571
Query: 361 LSYVYQRSTTAISVVAPICYAHLAA 435
L + Y R T ++S+V YAHLAA
Sbjct: 572 LCFTYARCTRSVSIVPACYYAHLAA 646
Score = 34.5 bits (69), Expect(2) = 1e-030
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1 / +2
Query: 118 NPKFTLIIAQKNHHTKFF 171
+PK T I+ QK HHT+FF
Sbjct: 308 SPKVTFIVVQKRHHTRFF 361
>gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clone RS66B04, mRNA sequence
Length = 557
Score = 119 bits (254), Expect(2) = 1e-030
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +1 / +1
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P HY++L DE GF P+D+Q L +
Sbjct: 163 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 342
Query: 361 LSYVYQRSTTAISVVAPICYAHLAA 435
L + Y R T ++S+V YAHLAA
Sbjct: 343 LCFTYARCTRSVSIVPACYYAHLAA 417
Score = 34.5 bits (69), Expect(2) = 1e-030
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1 / +1
Query: 118 NPKFTLIIAQKNHHTKFF 171
+PK T I+ QK HHT+FF
Sbjct: 79 SPKVTFIVVQKRHHTRFF 132
>gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_D07_A034 5', mRNA sequence
Length = 533
Score = 119 bits (254), Expect(2) = 1e-030
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +1 / +3
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P HY++L DE GF P+D+Q L +
Sbjct: 192 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 371
Query: 361 LSYVYQRSTTAISVVAPICYAHLAA 435
L + Y R T ++S+V YAHLAA
Sbjct: 372 LCFTYARCTRSVSIVPACYYAHLAA 446
Score = 34.5 bits (69), Expect(2) = 1e-030
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1 / +3
Query: 118 NPKFTLIIAQKNHHTKFF 171
+PK T I+ QK HHT+FF
Sbjct: 108 SPKVTFIVVQKRHHTRFF 161
>gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 3', mRNA sequence
Length = 821
Score = 126 bits (269), Expect(2) = 3e-030
Identities = 47/91 (51%), Positives = 66/91 (72%)
Frame = +1 / -3
Query: 187 DNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLS 366
DN+P GTVVD + HPR FDFY+CSH+G+ GT+RPTHYH+L DE F D+LQ+L+++L
Sbjct: 435 DNIPPGTVVDTLITHPREFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLC 256
Query: 367 YVYQRSTTAISVVAPICYAHLAAAQVGQFIK 459
Y + R T +S+V YAHLAA + +++
Sbjct: 255 YTFVRCTKPVSLVPLAYYAHLAAYRARLYLE 163
Score = 26.3 bits (51), Expect(2) = 3e-030
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1 / -3
Query: 532 LPRLHEKVRSSMFFC* 579
LP+L+E V+ MF+C*
Sbjct: 51 LPKLNENVKKLMFYC* 4
>gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 5', mRNA sequence
Length = 793
Score = 126 bits (269), Expect(2) = 3e-030
Identities = 47/91 (51%), Positives = 66/91 (72%)
Frame = +1 / -3
Query: 187 DNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLS 366
DN+P GTVVD + HPR FDFY+CSH+G+ GT+RPTHYH+L DE F D+LQ+L+++L
Sbjct: 566 DNIPPGTVVDTLITHPREFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLC 387
Query: 367 YVYQRSTTAISVVAPICYAHLAAAQVGQFIK 459
Y + R T +S+V YAHLAA + +++
Sbjct: 386 YTFVRCTKPVSLVPLAYYAHLAAYRARLYLE 294
Score = 26.3 bits (51), Expect(2) = 3e-030
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1 / -3
Query: 532 LPRLHEKVRSSMFFC* 579
LP+L+E V+ MF+C*
Sbjct: 182 LPKLNENVKKLMFYC* 135
>gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 5', mRNA sequence
Length = 840
Score = 122 bits (262), Expect(2) = 4e-030
Identities = 46/95 (48%), Positives = 62/95 (65%)
Frame = +1 / +2
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
NH + + + N+ GTVVD+ +CHP DFY+CSHAG+ GT+ P HYH+L D+ F
Sbjct: 296 NHRDRNSVDKRSGNILPGTVVDSTICHPTELDFYLCSHAGIHGTSTPAHYHVLWDDNTFT 475
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 476 ADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 580
Score = 29.0 bits (57), Expect(2) = 4e-030
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1 / +2
Query: 112 EMNPKFTLIIAQKNHHTKFF 171
+ P T I+ QK HHT+ F
Sbjct: 230 DYQPPVTFIVVQKRHHTRLF 289
>gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 3', mRNA sequence
Length = 818
Score = 119 bits (254), Expect(2) = 7e-030
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +1 / +1
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P HY++L DE GF P+D+Q L +
Sbjct: 109 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 288
Query: 361 LSYVYQRSTTAISVVAPICYAHLAA 435
L + Y R T ++S+V YAHLAA
Sbjct: 289 LCFTYARCTRSVSIVPACYYAHLAA 363
Score = 31.8 bits (63), Expect(2) = 7e-030
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1 / +1
Query: 118 NPKFTLIIAQKNHHTKFF 171
+PK T I+ Q HHT+FF
Sbjct: 25 SPKVTFIVVQXRHHTRFF 78
>gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C07_A029 5', mRNA sequence
Length = 741
Score = 122 bits (261), Expect(2) = 7e-030
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = +1 / +2
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K NVP GTVVD + HPR FDFY+CSH G++GT++PTHYH+L D+ F+ D+L+ L+++
Sbjct: 77 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 256
Query: 361 LSYVYQRSTTAISVVAPICYAHLAA 435
L Y + R T +S+ P+ YA LAA
Sbjct: 257 LCYTFARCTKPVSLAPPVYYADLAA 331
Score = 28.6 bits (56), Expect(2) = 7e-030
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1 / +2
Query: 535 PRLHEKVRSSMFFC* 579
P+LH+ V+++MFFC*
Sbjct: 428 PKLHDGVKNAMFFC* 472
>gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 3', mRNA sequence
Length = 686
Score = 122 bits (261), Expect(2) = 7e-030
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = +1 / -3
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K NVP GTVVD + HPR FDFY+CSH G++GT++PTHYH+L D+ F+ D+L+ L+++
Sbjct: 474 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 295
Query: 361 LSYVYQRSTTAISVVAPICYAHLAA 435
L Y + R T +S+ P+ YA LAA
Sbjct: 294 LCYTFARCTKPVSLAPPVYYADLAA 220
Score = 28.6 bits (56), Expect(2) = 7e-030
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 535 PRLHEKVRSSMFFC* 579
P+LH+ V+++MFFC*
Sbjct: 123 PKLHDGVKNAMFFC* 79
>gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_H03_A029 5', mRNA sequence
Length = 685
Score = 119 bits (254), Expect(2) = 1e-029
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +1 / -3
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K N+ GTVVD+ +C P+ FDFY+CSHAG+ GT++P HY++L DE GF P+D+Q L +
Sbjct: 605 KNGNLLPGTVVDSVICQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTND 426
Query: 361 LSYVYQRSTTAISVVAPICYAHLAA 435
L + Y R T ++S+V YAHLAA
Sbjct: 425 LCFTYARCTRSVSIVPACYYAHLAA 351
Score = 30.9 bits (61), Expect(2) = 1e-029
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / -3
Query: 124 KFTLIIAQKNHHTKFF 171
K T I+ QK HHT+FF
Sbjct: 683 KVTFIVVQKRHHTRFF 636
>gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D08_A029 5', mRNA sequence
Length = 797
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +1 / +3
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 492 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 671
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 672 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 776
>gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_E06_A029 3', mRNA sequence
Length = 900
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +1 / +3
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 156 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 335
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 336 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 440
>gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 5', mRNA sequence
Length = 845
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +1 / +2
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 257 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 436
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 437 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 541
>gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 3', mRNA sequence
Length = 871
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +1 / +3
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 111 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 290
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 291 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 395
>gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 5', mRNA sequence
Length = 831
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +1 / +2
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 428 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 607
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 608 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 712
>gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 3', mRNA sequence
Length = 823
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +1 / +2
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 68 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 247
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 248 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 352
>gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 3', mRNA sequence
Length = 759
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +1 / +3
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 15 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 194
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 195 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 299
>gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 5', mRNA sequence
Length = 626
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +1 / +2
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 200 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 379
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 380 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 484
>gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 5', mRNA sequence
Length = 796
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +1 / +3
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 234 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 413
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 414 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 518
>gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_E04_A029 5', mRNA sequence
Length = 924
Score = 130 bits (278), Expect = 2e-029
Identities = 50/95 (52%), Positives = 64/95 (67%)
Frame = +1 / +3
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 390 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 569
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 570 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 674
>gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 5', mRNA sequence
Length = 722
Score = 121 bits (258), Expect(2) = 2e-029
Identities = 43/82 (52%), Positives = 61/82 (74%)
Frame = +1 / -2
Query: 190 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 369
NVP GTVVD + HPR FDFY+CSH G++GT++PTHYH+L D+ F+ D+L+ L+++L Y
Sbjct: 718 NVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCY 539
Query: 370 VYQRSTTAISVVAPICYAHLAA 435
+ R T +S+ P+ YA LAA
Sbjct: 538 TFARCTKPVSLAPPVYYADLAA 473
Score = 28.6 bits (56), Expect(2) = 2e-029
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 535 PRLHEKVRSSMFFC* 579
P+LH+ V+++MFFC*
Sbjct: 376 PKLHDGVKNAMFFC* 332
>gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A07 5' similar to Arabidopsis thaliana
sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 128 bits (274), Expect = 5e-029
Identities = 48/82 (58%), Positives = 60/82 (73%)
Frame = +1 / +2
Query: 190 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 369
N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F D LQ L ++L Y
Sbjct: 74 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 253
Query: 370 VYQRSTTAISVVAPICYAHLAA 435
Y R T ++S+V P YAHLAA
Sbjct: 254 TYARCTRSVSIVPPAYYAHLAA 319
>gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_B11_A021 3', mRNA
sequence
Length = 645
Score = 128 bits (274), Expect = 5e-029
Identities = 48/82 (58%), Positives = 60/82 (73%)
Frame = +1 / +2
Query: 190 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 369
N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F D LQ L ++L Y
Sbjct: 23 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 202
Query: 370 VYQRSTTAISVVAPICYAHLAA 435
Y R T ++S+V P YAHLAA
Sbjct: 203 TYARCTRSVSIVPPAYYAHLAA 268
>gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 3', mRNA sequence
Length = 755
Score = 128 bits (274), Expect = 5e-029
Identities = 49/95 (51%), Positives = 63/95 (66%)
Frame = +1 / +3
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 6 NNHQDRNATDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 185
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++ Y Y R T ++S+V P YAHLAA
Sbjct: 186 ADGLQSLTNNFCYTYARCTRSVSIVPPAYYAHLAA 290
>gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 3', mRNA sequence
Length = 741
Score = 128 bits (274), Expect = 5e-029
Identities = 48/82 (58%), Positives = 60/82 (73%)
Frame = +1 / +1
Query: 190 NVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSY 369
N+ GTVVD+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F D LQ L ++L Y
Sbjct: 31 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 210
Query: 370 VYQRSTTAISVVAPICYAHLAA 435
Y R T ++S+V P YAHLAA
Sbjct: 211 TYARCTRSVSIVPPAYYAHLAA 276
>gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9201r, mRNA sequence
Length = 580
Score = 127 bits (273), Expect = 8e-029
Identities = 49/95 (51%), Positives = 63/95 (66%)
Frame = +1 / +1
Query: 151 NHHTKFFIPGKPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFN 330
N+H + N+ GTV D+K+CHP FDFY+CSHAG+ GT+RP HYH+L DE F
Sbjct: 73 NNHQDRNATDRSGNILPGTVXDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFT 252
Query: 331 PDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAA 435
D LQ L ++L Y Y R T ++S+V P YAHLAA
Sbjct: 253 ADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAA 357
>gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 3', mRNA sequence
Length = 806
Score = 126 bits (270), Expect = 2e-028
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = +1 / +3
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K N+ GTVVD+ +CHP FDFY+CSHAG+ GT+RP HYH+L D+ F+ D LQ L ++
Sbjct: 183 KSGNILPGTVVDSTICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNN 362
Query: 361 LSYVYQRSTTAISVVAPICYAHLAAAQVGQFIK 459
L Y Y R T ++S+V P YAHLAA + +I+
Sbjct: 363 LCYTYARCTRSVSIVPPAYYAHLAAFRARFYIE 461
>gb|CF478983.1|CF478983 RTWW3_21_F03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F03_A022 3', mRNA sequence
Length = 608
Score = 113 bits (241), Expect(2) = 2e-028
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +1 / +3
Query: 274 IGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQF 453
IGT+RPTHYH+L DE F+ DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA+Q+ QF
Sbjct: 3 IGTSRPTHYHVLLDENDFSVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAASQMQQF 182
Query: 454 IKFDEM 471
+K +++
Sbjct: 183 LKAEDL 200
Score = 32.7 bits (65), Expect(2) = 2e-028
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1 / +3
Query: 520 PVQELPRLHEKVRSSMFFC* 579
PV ELP LH V ++MFFC*
Sbjct: 270 PVPELPVLHRNVCNTMFFC* 329
>gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_F12_A034 3', mRNA sequence
Length = 746
Score = 111 bits (238), Expect(2) = 1e-026
Identities = 39/77 (50%), Positives = 56/77 (72%)
Frame = +1 / +1
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K NVP GTVVD + HPR FDFY+CSH G++GT++PTHYH+L D+ F+ D+L+ L+++
Sbjct: 25 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 204
Query: 361 LSYVYQRSTTAISVVAP 411
L Y + R T +S+ P
Sbjct: 205 LCYTFARCTKPVSLAPP 255
Score = 28.6 bits (56), Expect(2) = 1e-026
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1 / +2
Query: 535 PRLHEKVRSSMFFC* 579
P+LH+ V+++MFFC*
Sbjct: 377 PKLHDGVKNAMFFC* 421
>gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC49 3' end, mRNA sequence
Length = 824
Score = 120 bits (257), Expect = 1e-026
Identities = 43/84 (51%), Positives = 61/84 (72%)
Frame = +1 / +2
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K NVP GTVVD + HPR FDFY+CSH G++GT++PTHYH+L D+ F+ D+L+ L+++
Sbjct: 572 KSGNVPPGTVVDTVIVHPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINN 751
Query: 361 LSYVYQRSTTAISVVAPICYAHLA 432
L Y + R T +S+ P+ YA LA
Sbjct: 752 LCYTFARCTKPVSLAPPVYYADLA 823
>gb|CX651789.1|CX651789 COLD1_54_G01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_G01_A029 5', mRNA sequence
Length = 652
Score = 107 bits (228), Expect(2) = 7e-026
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +1 / -1
Query: 286 RPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGQFIKFD 465
RPTHYH+L DE F DDLQ LVH+LSYVYQRSTTAIS VAPI YAHLAA Q+ QF+K D
Sbjct: 652 RPTHYHVLLDENSFIVDDLQILVHALSYVYQRSTTAISSVAPINYAHLAATQMQQFLKAD 473
Query: 466 EM 471
E+
Sbjct: 472 EL 467
Score = 30.4 bits (60), Expect(2) = 7e-026
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1 / -1
Query: 523 VQELPRLHEKVRSSMFFC* 579
V ELP LH+ V +MFFC*
Sbjct: 406 VPELPALHQNVCHTMFFC* 350
>gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV063_D02 5' similar to Arabidopsis thaliana
sequence At1g69440 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 615
Score = 110 bits (235), Expect(2) = 8e-025
Identities = 41/85 (48%), Positives = 59/85 (69%)
Frame = +1 / +1
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K NVP GTVVD + PR FD Y+CSH G++GT++ THYH+L D+ F+ D+L+ L+++
Sbjct: 211 KSGNVPPGTVVDTVIVRPRQFDGYLCSHNGLLGTSKRTHYHVLWDDNRFSSDELETLINN 390
Query: 361 LSYVYQRSTTAISVVAPICYAHLAA 435
L Y + R T +S+ P+ YA LAA
Sbjct: 391 LCYTFARCTKPVSLAPPVYYADLAA 465
Score = 23.5 bits (45), Expect(2) = 8e-025
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +1 / +1
Query: 532 LPRLHEKVRSSMFFC* 579
+P+LH+ V++ +F C*
Sbjct: 559 VPKLHDGVKNXVFXC* 606
>gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_E04_A029 5', mRNA sequence
Length = 643
Score = 114 bits (243), Expect = 1e-024
Identities = 43/85 (50%), Positives = 58/85 (68%)
Frame = +1 / -1
Query: 181 KPDNVPAGTVVDNKVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHS 360
K N+ GTVVD+ +C P+ FDFY CSHAG+ GT++P HY++ DE GF P+D+Q L +
Sbjct: 607 KNGNLLPGTVVDSVICQPKIFDFYFCSHAGIKGTSKPAHYNVFQDENGFPPNDIQRLTND 428
Query: 361 LSYVYQRSTTAISVVAPICYAHLAA 435
L + Y R T +S+V YAHLAA
Sbjct: 427 LCFTYARCTRFVSIVPACYYAHLAA 353
>gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clone RS34D06, mRNA sequence
Length = 646
Score = 100 bits (213), Expect(2) = 3e-023
Identities = 39/72 (54%), Positives = 48/72 (66%)
Frame = +1 / +3
Query: 220 KVCHPRNFDFYMCSHAGMIGTTRPTHYHILHDEIGFNPDDLQELVHSLSYVYQRSTTAIS 399
K HP DF +CSHAG+ GT+RP HYH+L DE F D LQ L ++L Y Y R T ++S
Sbjct: 351 KFGHPTELDFNLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVS 530
Query: 400 VVAPICYAHLAA 435
+V P YAHLAA
Sbjct: 531 IVTPAYYAHLAA 566
Score = 28.1 bits (55), Expect(2) = 3e-023
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +2
Query: 121 PKFTLIIAQKNHHTKFF 171
P T ++ QK HHT+ F
Sbjct: 227 PPVTFVVVQKRHHTRIF 277
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 504,690,193
Number of Sequences: 355925
Number of extensions: 8026470
Number of successful extensions: 51996
Number of sequences better than 1.0e-020: 54
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12724564220
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)