TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.2
(910 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus cal... 189 3e-047
gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control P... 180 1e-044
gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism... 180 1e-044
gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism... 180 1e-044
gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus pota... 180 1e-044
gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciat... 180 1e-044
gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciat... 178 4e-044
gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciat... 178 4e-044
gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus... 177 7e-044
gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine ro... 177 1e-043
gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine ro... 175 4e-043
gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus... 173 1e-042
gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side ... 171 5e-042
gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pi... 170 2e-041
gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Ve... 163 1e-039
gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Ver... 163 1e-039
gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pi... 163 1e-039
gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated wi... 163 1e-039
gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated wi... 163 1e-039
gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated w... 163 1e-039
gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated w... 163 1e-039
gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calc... 163 1e-039
gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calc... 163 1e-039
gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus mag... 163 1e-039
gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control P... 163 2e-039
gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch... 163 2e-039
gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciat... 160 9e-039
gb|AI812692.1|AI812692 17H9 Pine Lambda Zap Xylem library P... 159 2e-038
gb|CO200683.1|CO200683 GEO2_8_H04.g1_A032 Root gravitropism... 158 5e-038
gb|BQ198615.1|BQ198615 NXLV133_F09_F NXLV (Nsf Xylem Late w... 156 2e-037
gb|DR079744.1|DR079744 RTFEPL1_17_G07.b1_A029 Roots plus ad... 152 3e-036
gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus ... 143 5e-035
gb|CO158324.1|CO158324 FLD1_6_E04.b1_A029 Root flooded Pinu... 142 9e-035
gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus... 141 1e-034
gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus m... 141 1e-034
gb|DR054782.1|DR054782 RTCA1_19_C02.g1_A029 Roots minus cal... 146 2e-034
gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism... 140 3e-034
gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus... 141 6e-034
gb|BX784299.1|BX784299 BX784299 Pinus pinaster differenciat... 142 3e-033
gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control P... 133 4e-032
gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pi... 134 7e-031
gb|CO160828.1|CO160828 FLD1_24_F07.g1_A029 Root flooded Pin... 134 9e-031
gb|CO196970.1|CO196970 GEO1_3_A11.b1_A029 Root gravitropism... 131 9e-030
gb|CO196976.1|CO196976 GEO1_3_B11.b1_A029 Root gravitropism... 131 9e-030
gb|DR011228.1|DR011228 HEAT1_4_H03.b1_A029 Root at 37 C for... 131 9e-030
gb|DR091892.1|DR091892 RTAL1_24_D12.g1_A029 Roots plus adde... 125 4e-028
gb|BQ697562.1|BQ697562 NXPV_058_A01_F NXPV (Nsf Xylem Plani... 124 1e-027
gb|BQ696747.1|BQ696747 NXPV_044_G07_F NXPV (Nsf Xylem Plani... 123 2e-027
gb|BG318141.1|BG318141 NXPV_010_H11_F NXPV (Nsf Xylem Plani... 119 2e-026
gb|BM428215.1|BM428215 NXRV_013_H12_F NXRV (Nsf Xylem Root ... 117 9e-026
gb|DR120720.1|DR120720 RTMG1_31_B05.g1_A029 Roots minus mag... 117 1e-025
gb|CO201574.1|CO201574 RTCNT2_6_E06.g1_A029 Root control 2 ... 116 2e-025
gb|DR019423.1|DR019423 STRS1_29_H11.g1_A034 Shoot tip pitch... 114 8e-025
gb|AW698004.1|AW698004 NXNV_079_D10_F Nsf Xylem Normal wood... 114 1e-024
gb|CX715391.1|CX715391 RTPQ1_33_G10.g1_A032 Roots treated w... 107 1e-022
gb|DR120585.1|DR120585 RTMG1_30_E02.g1_A029 Roots minus mag... 107 1e-022
gb|CX650224.1|CX650224 COLD1_44_F10.b1_A029 Root cold Pinus... 105 6e-022
gb|DR011296.1|DR011296 HEAT1_4_H03.g1_A029 Root at 37 C for... 105 6e-022
gb|BM493829.1|BM493829 NXLV_070_A11_F NXLV (Nsf Xylem Late ... 104 1e-021
gb|BM367221.1|BM367221 NXLV_046_C05_F NXLV (Nsf Xylem Late ... 103 2e-021
gb|DT637149.1|DT637149 EST1152080 Normalized pine embryo li... 102 4e-021
>gb|DR054713.1|DR054713 RTCA1_19_C02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 3', mRNA sequence
Length = 751
Score = 189 bits (407), Expect = 3e-047
Identities = 76/167 (45%), Positives = 105/167 (62%)
Frame = -1 / +2
Query: 886 TPVKXXXYFNAXXXXFKXXLIGXXPPSNTAPTKMAPNVISAEFRXFIXVXFENPEKSIXX 707
TP++ Y+N + +++ + M V++ E+R F+ + F+N E +I
Sbjct: 119 TPMQLADYYNISGVYIMGGISDSPNGGSSSSSYMQSAVLNVEYRNFVEIVFQNNENTIQS 298
Query: 706 IXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVR 527
+ +FF VGM G WT ASR+ YNL D VSR T QVYP+SWTA+++TFDNAGMW++R
Sbjct: 299 WHLDGYSFFVVGMENGTWTPASRNGYNLFDAVSRCTTQVYPQSWTAILLTFDNAGMWNLR 478
Query: 526 SNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPP 386
S W RQ+LG+Q YV V SP RSLRDE+N+P +L CGK G P P
Sbjct: 479 SETWPRQFLGQQTYVRVRSPVRSLRDEFNIPHNALLCGKARGRPRLP 619
Score = 120 bits (257), Expect = 1e-026
Identities = 59/130 (45%), Positives = 72/130 (55%)
Frame = +3 / -2
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+L SSLSDR+G++TLTY C PR + + H+PALS V
Sbjct: 618 GRRGRPLAFPQRRAL*GILNSSLSDRTGDLTLTYVC*PRNWRGHVSDLRFHIPALSKVKR 439
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGFSKXTX 746
AVHD GYTW+V R T S+RLY A VH+P +PT KK +FS F
Sbjct: 438 IAVHDCGYTWVVQRETASKRLYPFLLAGVHVPFSIPTTKKEYPSKCHD*MVFSLF*NTIS 259
Query: 747 MNXRNSALMT 776
R S T
Sbjct: 258 TKLRYSTFST 229
>gb|CF668202.1|CF668202 RTCNT1_35_B12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_B12_A029 3', mRNA sequence
Length = 739
Score = 180 bits (388), Expect = 1e-044
Identities = 68/129 (52%), Positives = 91/129 (70%)
Frame = -1 / +3
Query: 772 ISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQ 593
++ E+R F+ + F+N E +I + AFF VG+ G WT A+R +YNL D VSR T Q
Sbjct: 192 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 371
Query: 592 VYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 413
VYP SWTA+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 372 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 551
Query: 412 KVVGLPMPP 386
K G P P
Sbjct: 552 KATGRPRLP 578
Score = 107 bits (229), Expect = 9e-023
Identities = 53/115 (46%), Positives = 65/115 (56%)
Frame = +3 / -1
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D +G+ TLTY C PR C S + + H PALS V
Sbjct: 577 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 398
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGF 731
AVH+ GYT +V R T S+RL + A V P PT KKA +FS F
Sbjct: 397 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*F 233
>gb|CO200196.1|CO200196 GEO2_6_B02.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 3', mRNA sequence
Length = 805
Score = 180 bits (388), Expect = 1e-044
Identities = 68/129 (52%), Positives = 91/129 (70%)
Frame = -1 / +3
Query: 772 ISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQ 593
++ E+R F+ + F+N E +I + AFF VG+ G WT A+R +YNL D VSR T Q
Sbjct: 255 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 434
Query: 592 VYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 413
VYP SWTA+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 435 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 614
Query: 412 KVVGLPMPP 386
K G P P
Sbjct: 615 KATGRPRLP 641
Score = 107 bits (229), Expect = 9e-023
Identities = 53/115 (46%), Positives = 65/115 (56%)
Frame = +3 / -1
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D +G+ TLTY C PR C S + + H PALS V
Sbjct: 640 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 461
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGF 731
AVH+ GYT +V R T S+RL + A V P PT KKA +FS F
Sbjct: 460 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*F 296
>gb|CO200276.1|CO200276 GEO2_6_B02.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_B02_A032 5', mRNA sequence
Length = 883
Score = 180 bits (388), Expect = 1e-044
Identities = 68/129 (52%), Positives = 91/129 (70%)
Frame = -1 / +3
Query: 772 ISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQ 593
++ E+R F+ + F+N E +I + AFF VG+ G WT A+R +YNL D VSR T Q
Sbjct: 315 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 494
Query: 592 VYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 413
VYP SWTA+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 495 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 674
Query: 412 KVVGLPMPP 386
K G P P
Sbjct: 675 KATGRPRLP 701
Score = 107 bits (229), Expect = 9e-023
Identities = 53/115 (46%), Positives = 65/115 (56%)
Frame = +3 / -1
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D +G+ TLTY C PR C S + + H PALS V
Sbjct: 700 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 521
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGF 731
AVH+ GYT +V R T S+RL + A V P PT KKA +FS F
Sbjct: 520 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*F 356
>gb|CO364648.1|CO364648 RTK1_21_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_A07_A029 3', mRNA sequence
Length = 875
Score = 180 bits (388), Expect = 1e-044
Identities = 68/129 (52%), Positives = 91/129 (70%)
Frame = -1 / +3
Query: 772 ISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQ 593
++ E+R F+ + F+N E +I + AFF VG+ G WT A+R +YNL D VSR T Q
Sbjct: 234 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 413
Query: 592 VYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 413
VYP SWTA+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 414 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 593
Query: 412 KVVGLPMPP 386
K G P P
Sbjct: 594 KATGRPRLP 620
Score = 107 bits (229), Expect = 9e-023
Identities = 53/115 (46%), Positives = 65/115 (56%)
Frame = +3 / -2
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D +G+ TLTY C PR C S + + H PALS V
Sbjct: 619 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 440
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGF 731
AVH+ GYT +V R T S+RL + A V P PT KKA +FS F
Sbjct: 439 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSSPTTKKAYPSKCQDWIVFS*F 275
>gb|BX252211.1|BX252211 BX252211 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP061D03, mRNA sequence
Length = 707
Score = 180 bits (387), Expect = 1e-044
Identities = 69/129 (53%), Positives = 90/129 (69%)
Frame = -1 / +3
Query: 772 ISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQ 593
++ E+R FI + F+N E +I + +FF VGM G WT A+R +YNL D VSR T Q
Sbjct: 30 LNVEYRAFIEIVFQNYENTIQSWHLDGYSFFVVGMDGGDWTPANRKSYNLFDAVSRCTTQ 209
Query: 592 VYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 413
VYP SWTA+ +TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 210 VYPNSWTAIFLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 389
Query: 412 KVVGLPMPP 386
K G P P
Sbjct: 390 KATGRPRLP 416
Score = 106 bits (227), Expect = 2e-022
Identities = 53/121 (43%), Positives = 66/121 (54%)
Frame = +3 / -2
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D +G+ TLTY C PR C S + + H PALS V
Sbjct: 415 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKK 236
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGFSKXTX 746
AVH+ GYT +V R T S+RL + A V P +PT KK +FS F
Sbjct: 235 MAVHEFGYT*VVQRETASKRL*LFLFAGVQSPPSIPTTKKEYPSKCQDWIVFS*FWNTIS 56
Query: 747 M 749
M
Sbjct: 55 M 53
>gb|BX253099.1|BX253099 BX253099 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP077H07 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 681
Score = 178 bits (384), Expect = 4e-044
Identities = 71/134 (52%), Positives = 91/134 (67%)
Frame = -1 / +3
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT ASR YNL D VS
Sbjct: 150 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 329
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 428
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY++P
Sbjct: 330 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHN 509
Query: 427 SLRCGKVVGLPMPP 386
+L CGK G P P
Sbjct: 510 ALLCGKARGRPRLP 551
Score = 112 bits (240), Expect = 3e-024
Identities = 56/126 (44%), Positives = 68/126 (53%)
Frame = +3 / -3
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D + TL Y C PRY + + +R H+PALS V
Sbjct: 550 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 371
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGFSKXTX 746
TAVHD GYTW+V R T S+RL A VH P +PT KK +FS F
Sbjct: 370 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTIS 191
Query: 747 MNXRNS 764
R S
Sbjct: 190 TKVRYS 173
>gb|BX253553.1|BX253553 BX253553 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085B04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 613
Score = 178 bits (384), Expect = 4e-044
Identities = 71/134 (52%), Positives = 91/134 (67%)
Frame = -1 / +2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT ASR YNL D VS
Sbjct: 35 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 214
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 428
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY++P
Sbjct: 215 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHN 394
Query: 427 SLRCGKVVGLPMPP 386
+L CGK G P P
Sbjct: 395 ALLCGKARGRPRLP 436
Score = 112 bits (240), Expect = 3e-024
Identities = 56/126 (44%), Positives = 68/126 (53%)
Frame = +3 / -2
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D + TL Y C PRY + + +R H+PALS V
Sbjct: 435 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 256
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGFSKXTX 746
TAVHD GYTW+V R T S+RL A VH P +PT KK +FS F
Sbjct: 255 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTIS 76
Query: 747 MNXRNS 764
R S
Sbjct: 75 TKVRYS 58
>gb|CX648343.1|CX648343 COLD1_28_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_C05_A029 3', mRNA sequence
Length = 733
Score = 177 bits (382), Expect = 7e-044
Identities = 67/129 (51%), Positives = 89/129 (68%)
Frame = -1 / +1
Query: 772 ISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQ 593
++ E+R F+ + F+N E +I + AFF VG+ G WT A+R YNL D VSR T Q
Sbjct: 22 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKNYNLFDAVSRCTTQ 201
Query: 592 VYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCG 413
VYP SWTA+++TFDNAG+W++RS WER +LG+Q YV V SP +SLRDEY++P +L CG
Sbjct: 202 VYPNSWTAILLTFDNAGLWNLRSQTWERHFLGQQTYVRVKSPVKSLRDEYDIPHNALLCG 381
Query: 412 KVVGLPMPP 386
K G P P
Sbjct: 382 KATGRPRLP 408
Score = 106 bits (226), Expect = 2e-022
Identities = 53/115 (46%), Positives = 64/115 (55%)
Frame = +3 / -3
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D +G+ TLTY C PR C S + + H PALS V
Sbjct: 407 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRKCRSHVCDLRFHSPALSKVKR 228
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGF 731
AVH+ GYT +V R T S+RL A V P PT KKA +FS F
Sbjct: 227 MAVHEFGYT*VVQRETASKRL*FFLFAGVQSPPSNPTTKKAYPSKCQDWIVFS*F 63
>gb|CF390900.1|CF390900 RTDR3_2_G08.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 5', mRNA
sequence
Length = 732
Score = 177 bits (380), Expect = 1e-043
Identities = 71/134 (52%), Positives = 90/134 (67%)
Frame = -1 / -2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I +FF VGM G+WT ASR YNL D VS
Sbjct: 611 MQTAALSVEYRTFVEIVFQNYENTIQSWHSDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 432
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 428
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY++P
Sbjct: 431 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHN 252
Query: 427 SLRCGKVVGLPMPP 386
+L CGK G P P
Sbjct: 251 ALLCGKARGRPRLP 210
Score = 112 bits (240), Expect = 3e-024
Identities = 56/126 (44%), Positives = 68/126 (53%)
Frame = +3 / +1
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D + TL Y C PRY + + +R H+PALS V
Sbjct: 211 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 390
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGFSKXTX 746
TAVHD GYTW+V R T S+RL A VH P +PT KK +FS F
Sbjct: 391 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSECHDWIVFS*FWNTIS 570
Query: 747 MNXRNS 764
R S
Sbjct: 571 TKVRYS 588
>gb|CF390872.1|CF390872 RTDR3_2_G08.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G08_A022 3', mRNA
sequence
Length = 630
Score = 175 bits (377), Expect = 4e-043
Identities = 69/126 (54%), Positives = 88/126 (69%)
Frame = -1 / +1
Query: 763 EFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQVYP 584
E+R F+ + F+N E +I + +FF VGM G+WT ASR YNL D VSR T QVYP
Sbjct: 4 EYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVSRCTTQVYP 183
Query: 583 RSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVV 404
+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY++P +L CGK
Sbjct: 184 QSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHNALLCGKAR 363
Query: 403 GLPMPP 386
G P P
Sbjct: 364 GRPRLP 381
Score = 112 bits (240), Expect = 3e-024
Identities = 56/126 (44%), Positives = 68/126 (53%)
Frame = +3 / -2
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D + TL Y C PRY + + +R H+PALS V
Sbjct: 380 GRRGRPLAFPQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKR 201
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGFSKXTX 746
TAVHD GYTW+V R T S+RL A VH P +PT KK +FS F
Sbjct: 200 TAVHDCGYTWVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTIS 21
Query: 747 MNXRNS 764
R S
Sbjct: 20 TKVRYS 3
>gb|CX650010.1|CX650010 COLD1_43_A01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_43_A01_A029 3', mRNA sequence
Length = 784
Score = 173 bits (373), Expect = 1e-042
Identities = 68/126 (53%), Positives = 88/126 (69%)
Frame = -1 / +2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT ASR YNL D VS
Sbjct: 53 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 232
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 428
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY++P
Sbjct: 233 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYDIPHN 412
Query: 427 SLRCGK 410
+L CGK
Sbjct: 413 ALLCGK 430
Score = 104 bits (222), Expect = 9e-022
Identities = 52/117 (44%), Positives = 64/117 (54%)
Frame = +3 / -2
Query: 414 PQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVIITAVHDLGYT 593
PQRR + G+ YSSL+D + TL Y C PRY + + +R H+PALS V TAVHD GYT
Sbjct: 426 PQRRAL*GISYSSLADLTRVFTLMYVC*PRYWRAHISDRRFHIPALSKVKRTAVHDCGYT 247
Query: 594 WIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGFSKXTXMNXRNS 764
W+V R T S+RL A VH P +PT KK +FS F R S
Sbjct: 246 WVVQRETASKRL*YFLLAGVHSPPSIPTTKKEYPSKCHDWIVFS*FWNTISTKVRYS 76
>gb|BF777683.1|BF777683 NXSI_073_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_073_G01 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 478
Score = 171 bits (369), Expect = 5e-042
Identities = 67/126 (53%), Positives = 87/126 (69%)
Frame = -1 / +3
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT ASR YNL D VS
Sbjct: 27 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 206
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 428
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + R RDEY++P
Sbjct: 207 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRXARDEYDIPHN 386
Query: 427 SLRCGK 410
+L CGK
Sbjct: 387 ALLCGK 404
>gb|CF663788.1|CF663788 RTCNT1_5_D04.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_5_D04_A029 3', mRNA sequence
Length = 647
Score = 170 bits (365), Expect = 2e-041
Identities = 65/121 (53%), Positives = 84/121 (69%)
Frame = -1 / +2
Query: 748 IXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTA 569
+ + F+N E +I + AFF VG+ G WT A+R YNL D VSR T QVYP SWTA
Sbjct: 2 VEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKNYNLFDAVSRCTTQVYPNSWTA 181
Query: 568 VMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMP 389
+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SLRDEY++P +L CGK G P
Sbjct: 182 ILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLRDEYDIPHNALLCGKATGRPRL 361
Query: 388 P 386
P
Sbjct: 362 P 364
Score = 106 bits (226), Expect = 2e-022
Identities = 53/115 (46%), Positives = 64/115 (55%)
Frame = +3 / -3
Query: 387 GGIGRPTTLPQRRLVSGMLYSSLSDRSGEMTLTYSCSPRYCLSQMLERTLHMPALSNVII 566
G GRP PQRR + G+ YSSL+D +G+ TLTY C PR C S + + H PALS V
Sbjct: 363 GRRGRPVAFPQRRAL*GISYSSLNDFTGDFTLTYVCWPRNCRSHVCDLRFHSPALSKVKR 184
Query: 567 TAVHDLGYTWIVCRLTVSRRLYVLRDAAVHLPGPMPTAKKAXXXXXXXXXLFSGF 731
AVH+ GYT +V R T S+RL A V P PT KKA +FS F
Sbjct: 183 MAVHEFGYT*VVQRETASKRL*FFLFAGVQSPPSNPTTKKAYPSKCQDWIVFS*F 19
>gb|AW289615.1|AW289615 NXNV003D08F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D08 5', mRNA sequence
Length = 504
Score = 163 bits (351), Expect = 1e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +2
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 20 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 199
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 200 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 379
Query: 415 GK 410
G+
Sbjct: 380 GR 385
>gb|CD028202.1|CD028202 NXNV003D08 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV003D08 5' similar to Arabidopsis thaliana sequence
At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 504
Score = 163 bits (351), Expect = 1e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +2
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 20 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 199
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 200 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 379
Query: 415 GK 410
G+
Sbjct: 380 GR 385
>gb|CF664374.1|CF664374 RTCNT1_9_H08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 3', mRNA sequence
Length = 730
Score = 163 bits (351), Expect = 1e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +1
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 115 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 294
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 295 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 474
Query: 415 GK 410
G+
Sbjct: 475 GR 480
>gb|CX712690.1|CX712690 RTPQ1_4_D03.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 3', mRNA sequence
Length = 825
Score = 163 bits (351), Expect = 1e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +1
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 217 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 396
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 397 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 576
Query: 415 GK 410
G+
Sbjct: 577 GR 582
>gb|CX712760.1|CX712760 RTPQ1_4_D03.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_4_D03_A032 5', mRNA sequence
Length = 846
Score = 163 bits (351), Expect = 1e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +2
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 236 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 415
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 416 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 595
Query: 415 GK 410
G+
Sbjct: 596 GR 601
>gb|CX714477.1|CX714477 RTPQ1_22_E05.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_22_E05_A032 5', mRNA sequence
Length = 669
Score = 163 bits (351), Expect = 1e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +3
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 294 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 473
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 474 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 653
Query: 415 GK 410
G+
Sbjct: 654 GR 659
>gb|CX715314.1|CX715314 RTPQ1_33_G10.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_33_G10_A032 3', mRNA sequence
Length = 696
Score = 163 bits (351), Expect = 1e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +1
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 85 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 264
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 265 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 444
Query: 415 GK 410
G+
Sbjct: 445 GR 450
>gb|DR052538.1|DR052538 RTCA1_5_F12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F12_A029 3', mRNA sequence
Length = 664
Score = 163 bits (351), Expect = 1e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +1
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 46 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 225
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 226 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 405
Query: 415 GK 410
G+
Sbjct: 406 GR 411
>gb|DR052622.1|DR052622 RTCA1_5_F12.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_5_F12_A029 5', mRNA sequence
Length = 655
Score = 163 bits (351), Expect = 1e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +1
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 13 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 192
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 193 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 372
Query: 415 GK 410
G+
Sbjct: 373 GR 378
>gb|DR120505.1|DR120505 RTMG1_30_E02.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_E02_A029 3', mRNA sequence
Length = 834
Score = 163 bits (351), Expect = 1e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +1
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 217 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 396
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 397 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPAGSFRDEYSIPNNALKC 576
Query: 415 GK 410
G+
Sbjct: 577 GR 582
>gb|CF668554.1|CF668554 RTCNT1_37_F03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_F03_A029 3', mRNA sequence
Length = 703
Score = 163 bits (350), Expect = 2e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +1
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 88 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 267
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 268 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSFRDEYSIPNNALKC 447
Query: 415 GK 410
G+
Sbjct: 448 GR 453
>gb|DR019346.1|DR019346 STRS1_29_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_H11_A034 3', mRNA sequence
Length = 784
Score = 163 bits (350), Expect = 2e-039
Identities = 62/122 (50%), Positives = 83/122 (68%)
Frame = -1 / +1
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 166 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 345
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPETSLRC 416
QVYP SWTA+ + DN GMW++RS W RQYLG+Q Y+ V SP S RDEY++P +L+C
Sbjct: 346 QVYPNSWTAIRVPLDNVGMWNLRSENWARQYLGQQFYLRVYSPVGSFRDEYSIPNNALKC 525
Query: 415 GK 410
G+
Sbjct: 526 GR 531
>gb|BX255089.1|BX255089 BX255089 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110F04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 521
Score = 160 bits (345), Expect = 9e-039
Identities = 63/121 (52%), Positives = 83/121 (68%)
Frame = -1 / +2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT ASR YNL D VS
Sbjct: 158 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 337
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 428
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+ Y+ V + RS RDEY++P
Sbjct: 338 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQXTYIKVKTLVRSARDEYDIPHN 517
Query: 427 S 425
+
Sbjct: 518 A 520
>gb|AI812692.1|AI812692 17H9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 524
Score = 159 bits (342), Expect = 2e-038
Identities = 63/116 (54%), Positives = 81/116 (69%)
Frame = -1 / +2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT ASR YNL D VS
Sbjct: 176 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 355
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYN 440
R T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDEY+
Sbjct: 356 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDEYD 523
>gb|CO200683.1|CO200683 GEO2_8_H04.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_H04_A032 5', mRNA sequence
Length = 815
Score = 158 bits (340), Expect = 5e-038
Identities = 59/111 (53%), Positives = 81/111 (72%)
Frame = -1 / +2
Query: 772 ISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQ 593
++ E+R F+ + F+N E +I + AFF VG+ G WT A+R +YNL D VSR T Q
Sbjct: 482 LNVEYRAFVEIVFQNYENTIQSWHLDGYAFFVVGLDGGDWTPANRKSYNLFDAVSRCTTQ 661
Query: 592 VYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYN 440
VYP SWTA+++TFDNAG+W++RS WERQ+LG+Q YV V SP +SL+DEY+
Sbjct: 662 VYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQQTYVRVKSPVKSLKDEYD 814
>gb|BQ198615.1|BQ198615 NXLV133_F09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV133_F09 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 690
Score = 156 bits (335), Expect = 2e-037
Identities = 63/125 (50%), Positives = 82/125 (65%)
Frame = -1 / +3
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT AS YNL D VS
Sbjct: 315 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASXKYYNLFDAVS 494
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPET 428
R T QV P+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS DEY+ P
Sbjct: 495 RCTTQVXPQSWTAVLLTFDNAGMWNLRSEIWXRQYLGQQTYIXVKTLVRSXXDEYDXPHX 674
Query: 427 SLRCG 413
+L G
Sbjct: 675 ALLXG 689
>gb|DR079744.1|DR079744 RTFEPL1_17_G07.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_17_G07_A029 3', mRNA sequence
Length = 575
Score = 152 bits (327), Expect = 3e-036
Identities = 57/96 (59%), Positives = 72/96 (75%)
Frame = -1 / +1
Query: 673 GMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGE 494
G+ G WT A+R +YNL D VSR T QVYP SWTA+++TFDNAG+W++RS WERQ+LG+
Sbjct: 1 GLDGGDWTPANRKSYNLFDAVSRCTTQVYPNSWTAILLTFDNAGLWNLRSQTWERQFLGQ 180
Query: 493 QLYVSVISPERSLRDEYNMPETSLRCGKVVGLPMPP 386
Q YV V SP +SLRDEY++P +L CGK G P P
Sbjct: 181 QTYVRVKSPVKSLRDEYDIPHNALLCGKATGRPRLP 288
>gb|CX645991.1|CX645991 COLD1_6_C08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_6_C08_A029 5', mRNA sequence
Length = 789
Score = 143 bits (306), Expect(2) = 5e-035
Identities = 55/114 (48%), Positives = 75/114 (65%)
Frame = -1 / +1
Query: 805 NTAPTKMAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYN 626
N+A + V S +FR FI + F+N E +I + +FF GM G+W+ ASR +YN
Sbjct: 319 NSARGYLQAAVTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYN 498
Query: 625 LLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPE 464
L D VSR T QVYP+SWTA+++ DNAGMW++RS +W RQYLG+Q Y+ V E
Sbjct: 499 LFDAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAE 660
Score = 25.4 bits (49), Expect(2) = 5e-035
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1 / +1
Query: 451 DEYNMPETSLRCGKVVG 401
DEY+ P +L CG+ G
Sbjct: 667 DEYSAPRNALMCGRARG 717
>gb|CO158324.1|CO158324 FLD1_6_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_6_E04_A029 3', mRNA sequence
Length = 705
Score = 142 bits (305), Expect(2) = 9e-035
Identities = 53/93 (56%), Positives = 67/93 (72%)
Frame = -1 / +1
Query: 688 AFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWER 509
+FF +GM G+WT AS YNL DTVSR T QVYP SWTA+ + DN GMW++RS W R
Sbjct: 178 SFFVLGMDGGQWTEASMKEYNLFDTVSRCTTQVYPNSWTAIRVPLDNVGMWNLRSENWAR 357
Query: 508 QYLGEQLYVSVISPERSLRDEYNMPETSLRCGK 410
QYLG+Q Y+ V SP S RDEY++P +L+CG+
Sbjct: 358 QYLGQQFYLRVYSPAGSFRDEYSIPNNALKCGR 456
Score = 24.9 bits (48), Expect(2) = 9e-035
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1 / +2
Query: 775 VISAEFRXFIXVXFENPE 722
V+ ++FR FI + F+N E
Sbjct: 89 VMGSDFRAFIEIVFQNSE 142
>gb|CX647967.1|CX647967 COLD1_25_E04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 5', mRNA sequence
Length = 858
Score = 141 bits (303), Expect(2) = 1e-034
Identities = 53/104 (50%), Positives = 71/104 (68%)
Frame = -1 / -3
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V S +FR FI + F+N E +I + +FF GM G+W+ ASR +YNL D VSR T
Sbjct: 604 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 425
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPE 464
QVYP+SWTA+++ DNAGMW++RS +W RQYLG+Q Y+ V E
Sbjct: 424 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAE 293
Score = 25.4 bits (49), Expect(2) = 1e-034
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1 / -3
Query: 451 DEYNMPETSLRCGKVVG 401
DEY+ P +L CG+ G
Sbjct: 286 DEYSAPRNALMCGRARG 236
>gb|DR180858.1|DR180858 RTMNUT1_35_F12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_35_F12_A029 3', mRNA sequence
Length = 817
Score = 141 bits (303), Expect(2) = 1e-034
Identities = 53/104 (50%), Positives = 71/104 (68%)
Frame = -1 / +1
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V S +FR FI + F+N E +I + +FF GM G+W+ ASR +YNL D VSR T
Sbjct: 166 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 345
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPE 464
QVYP+SWTA+++ DNAGMW++RS +W RQYLG+Q Y+ V E
Sbjct: 346 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAE 477
Score = 25.4 bits (49), Expect(2) = 1e-034
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1 / +1
Query: 451 DEYNMPETSLRCGKVVG 401
DEY+ P +L CG+ G
Sbjct: 484 DEYSAPRNALMCGRARG 534
>gb|DR054782.1|DR054782 RTCA1_19_C02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_C02_A029 5', mRNA sequence
Length = 717
Score = 146 bits (314), Expect = 2e-034
Identities = 57/134 (42%), Positives = 83/134 (61%)
Frame = -1 / +3
Query: 886 TPVKXXXYFNAXXXXFKXXLIGXXPPSNTAPTKMAPNVISAEFRXFIXVXFENPEKSIXX 707
TP++ Y+N + +++ + M V++ E+R F+ + F+N E +I
Sbjct: 315 TPMQLADYYNISGVYIMGGISDSPNGGSSSSSYMQSAVLNVEYRNFVEIVFQNNENTIQS 494
Query: 706 IXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVR 527
+ +FF VGM G WT ASR+ YNL D VSR T QVYP+SWTA+++TFDNAGMW++R
Sbjct: 495 WHLDGYSFFVVGMENGTWTPASRNGYNLFDAVSRCTTQVYPQSWTAILLTFDNAGMWNLR 674
Query: 526 SNIWERQYLGEQLY 485
S W RQ+LG+Q Y
Sbjct: 675 SETWPRQFLGQQTY 716
>gb|CO197323.1|CO197323 GEO1_5_A12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_5_A12_A029 5', mRNA sequence
Length = 689
Score = 140 bits (300), Expect(2) = 3e-034
Identities = 52/100 (52%), Positives = 70/100 (70%)
Frame = -1 / -3
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V S +FR FI + F+N E +I + +FF GM G+W+ ASR +YNL D VSR T
Sbjct: 660 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 481
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSV 476
QVYP+SWTA+++ DNAGMW++RS +W RQYLG+Q Y+ V
Sbjct: 480 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 361
Score = 25.4 bits (49), Expect(2) = 3e-034
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1 / -3
Query: 451 DEYNMPETSLRCGKVVG 401
DEY+ P +L CG+ G
Sbjct: 342 DEYSAPRNALMCGRARG 292
>gb|CX647894.1|CX647894 COLD1_25_E04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_E04_A029 3', mRNA sequence
Length = 862
Score = 141 bits (303), Expect(2) = 6e-034
Identities = 53/104 (50%), Positives = 71/104 (68%)
Frame = -1 / -2
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V S +FR FI + F+N E +I + +FF GM G+W+ ASR +YNL D VSR T
Sbjct: 357 VTSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTT 178
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPE 464
QVYP+SWTA+++ DNAGMW++RS +W RQYLG+Q Y+ V E
Sbjct: 177 QVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAE 46
Score = 23.1 bits (44), Expect(2) = 6e-034
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -1 / -2
Query: 451 DEYNMPETSLRCG 413
DEY+ P +L CG
Sbjct: 39 DEYSAPRNALMCG 1
>gb|BX784299.1|BX784299 BX784299 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132C01 similar to L-ASCORBATE OXIDASE (EC
1.10.3.3), mRNA sequence
Length = 407
Score = 142 bits (305), Expect = 3e-033
Identities = 55/104 (52%), Positives = 72/104 (69%)
Frame = -1 / +2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT ASR Y+L D VS
Sbjct: 95 MQTAALSVEYRTFVEIVFQNYENTIPSWHLDGYSFFVVGMDGGEWTPASRKYYHLFDAVS 274
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSV 476
R T QVYP+SWTAV++TFDNAGMW++RS IW R YLG+Q Y+ V
Sbjct: 275 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARPYLGQQTYIKV 406
>gb|CF669641.1|CF669641 RTCNT1_45_E01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_45_E01_A029 3', mRNA sequence
Length = 679
Score = 133 bits (285), Expect(2) = 4e-032
Identities = 49/96 (51%), Positives = 67/96 (69%)
Frame = -1 / +2
Query: 763 EFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTIQVYP 584
+FR FI + +N E +I + +FF GM G+W+ ASR +YNL D VSR T QVYP
Sbjct: 5 QFRSFIEIVSQNNENTIQSWHVDGYSFFVAGMEGGQWSPASRKSYNLFDAVSRSTTQVYP 184
Query: 583 RSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSV 476
+SWTA+++ DNAGMW++RS +W RQYLG+Q Y+ V
Sbjct: 185 QSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKV 292
Score = 25.4 bits (49), Expect(2) = 4e-032
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1 / +2
Query: 451 DEYNMPETSLRCGKVVG 401
DEY+ P +L CG+ G
Sbjct: 311 DEYSAPRNALMCGRARG 361
>gb|CF664462.1|CF664462 RTCNT1_9_H08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_H08_A029 5', mRNA sequence
Length = 804
Score = 134 bits (288), Expect = 7e-031
Identities = 52/103 (50%), Positives = 68/103 (66%)
Frame = -1 / +3
Query: 775 VISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVSRHTI 596
V+ ++FR FI + F+N E +I + +FF +GM G+WT AS YNL DTVSR T
Sbjct: 489 VMGSDFRAFIEIVFQNSEDTIQSWHLDGYSFFVLGMDGGQWTEASMKEYNLFDTVSRCTT 668
Query: 595 QVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISP 467
QVYP SWTA+ + DN G W++RS W RQYLG+Q Y+ V SP
Sbjct: 669 QVYPNSWTAIRVPLDNVGKWNLRSENWARQYLGQQFYLRVYSP 797
>gb|CO160828.1|CO160828 FLD1_24_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_24_F07_A029 5', mRNA sequence
Length = 768
Score = 134 bits (287), Expect = 9e-031
Identities = 52/95 (54%), Positives = 66/95 (69%)
Frame = -1 / +2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT ASR YNL D VS
Sbjct: 482 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 661
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQY 503
R T QVYP+SWTAV++TFDNAGMW++RS IW RQY
Sbjct: 662 RCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQY 766
>gb|CO196970.1|CO196970 GEO1_3_A11.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_A11_A029 3', mRNA sequence
Length = 599
Score = 131 bits (280), Expect = 9e-030
Identities = 49/137 (35%), Positives = 84/137 (61%)
Frame = -1 / -3
Query: 790 KMAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTV 611
K+ ++I+ ++ F+ + +N + ++ + AFF VGM G WT SR TYN D V
Sbjct: 546 KLDTSIINGTYKGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGDWTEDSRGTYNKWDGV 367
Query: 610 SRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPE 431
+R T QV+P +WTA++++ DN GMW++R+ + YLG++ YV V++PE + + E +P
Sbjct: 366 ARATAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPS 187
Query: 430 TSLRCGKVVGLPMPPSY 380
+L CG + + P S+
Sbjct: 186 NALYCGALSRMQKPQSH 136
>gb|CO196976.1|CO196976 GEO1_3_B11.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_B11_A029 3', mRNA sequence
Length = 621
Score = 131 bits (280), Expect = 9e-030
Identities = 49/137 (35%), Positives = 84/137 (61%)
Frame = -1 / -3
Query: 790 KMAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTV 611
K+ ++I+ ++ F+ + +N + ++ + AFF VGM G WT SR TYN D V
Sbjct: 568 KLDTSIINGTYKGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGDWTEDSRGTYNKWDGV 389
Query: 610 SRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPE 431
+R T QV+P +WTA++++ DN GMW++R+ + YLG++ YV V++PE + + E +P
Sbjct: 388 ARATAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPS 209
Query: 430 TSLRCGKVVGLPMPPSY 380
+L CG + + P S+
Sbjct: 208 NALYCGALSRMQKPQSH 158
>gb|DR011228.1|DR011228 HEAT1_4_H03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_4_H03_A029 3', mRNA sequence
Length = 750
Score = 131 bits (280), Expect = 9e-030
Identities = 49/137 (35%), Positives = 84/137 (61%)
Frame = -1 / -1
Query: 790 KMAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTV 611
K+ ++I+ ++ F+ + +N + ++ + AFF VGM G WT SR TYN D V
Sbjct: 606 KLDTSIINGTYKGFMEIILQNNDTTVQSYHMDGYAFFVVGMDYGDWTEDSRGTYNKWDGV 427
Query: 610 SRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDEYNMPE 431
+R T QV+P +WTA++++ DN GMW++R+ + YLG++ YV V++PE + + E +P
Sbjct: 426 ARATAQVFPNAWTAILVSLDNVGMWNLRAENLDTWYLGQETYVRVVNPEINNKTELALPS 247
Query: 430 TSLRCGKVVGLPMPPSY 380
+L CG + + P S+
Sbjct: 246 NALYCGALSRMQKPQSH 196
>gb|DR091892.1|DR091892 RTAL1_24_D12.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_D12_A029 5', mRNA sequence
Length = 682
Score = 125 bits (268), Expect = 4e-028
Identities = 49/80 (61%), Positives = 60/80 (75%)
Frame = -1 / +3
Query: 625 LLDTVSRHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSVISPERSLRDE 446
L D VSR T QVYP+SWTAV++TFDNAGMW++RS IW RQYLG+Q Y+ V + RS RDE
Sbjct: 3 LFDAVSRCTTQVYPQSWTAVLLTFDNAGMWNLRSEIWARQYLGQQTYIKVKTLVRSARDE 182
Query: 445 YNMPETSLRCGKVVGLPMPP 386
Y++P +L CGK G P P
Sbjct: 183 YDIPHNALLCGKARGRPRLP 242
>gb|BQ697562.1|BQ697562 NXPV_058_A01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_058_A01 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 602
Score = 124 bits (265), Expect = 1e-027
Identities = 51/104 (49%), Positives = 66/104 (63%)
Frame = -1 / +2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM +WT A YNL D VS
Sbjct: 278 MQTAALSVEYRTFVEIVFQNYENTIQSWHLXGYSFFVVGMDGXEWTPAXXKYYNLFDAVS 457
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSV 476
R T Q YP+SWTAV++TFDNA MW++RS I RQYL Q Y+ V
Sbjct: 458 RCTTQXYPQSWTAVLLTFDNAXMWNLRSEIXARQYLXXQTYIKV 589
>gb|BQ696747.1|BQ696747 NXPV_044_G07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_044_G07 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 582
Score = 123 bits (263), Expect = 2e-027
Identities = 48/91 (52%), Positives = 62/91 (68%)
Frame = -1 / +2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT ASR YNL D VS
Sbjct: 278 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 457
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIW 515
R T QVYP+SWTAV++TFDNA MW++RS IW
Sbjct: 458 RCTTQVYPQSWTAVLLTFDNAXMWNLRSXIW 550
>gb|BG318141.1|BG318141 NXPV_010_H11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_H11 5' similar to Arabidopsis
thaliana sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 119 bits (255), Expect = 2e-026
Identities = 49/96 (51%), Positives = 62/96 (64%)
Frame = -1 / +2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + F+N E +I + +FF VGM G+WT ASR YNL D VS
Sbjct: 278 MQTAALSVEYRTFVEIVFQNYENTIQSWHLDGYSFFVVGMDGGEWTPASRKYYNLFDAVS 457
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYL 500
R T QVYP+SWTAV++T DNA M +RS IW RQ L
Sbjct: 458 RCTTQVYPQSWTAVLLTXDNAXMXXLRSEIWXRQIL 565
>gb|BM428215.1|BM428215 NXRV_013_H12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_013_H12 5' similar to Arabidopsis thaliana
sequence At1g76160 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 626
Score = 117 bits (251), Expect = 9e-026
Identities = 49/104 (47%), Positives = 61/104 (58%)
Frame = -1 / +2
Query: 787 MAPNVISAEFRXFIXVXFENPEKSIXXIXIXXXAFFAVGMGPGKWTAASRSTYNLLDTVS 608
M +S E+R F+ + N E +I + +FF VGM G+WT AS YNL D VS
Sbjct: 308 MQTAALSVEYRTFVEIVXXNYENTIQSWHLDGYSFFVVGMDGGEWTPASXKYYNLFDAVS 487
Query: 607 RHTIQVYPRSWTAVMMTFDNAGMWSVRSNIWERQYLGEQLYVSV 476
R T QVYP S T V++T DNAGMW++RS IW RQY Y V
Sbjct: 488 RXTTQVYPXSXTXVLLTXDNAGMWNLRSXIWARQYXXXXTYXKV 619
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 349,261,067
Number of Sequences: 355925
Number of extensions: 4259647
Number of successful extensions: 36169
Number of sequences better than 1.0e-020: 78
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 13336868280
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)