TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276425.2.1
(753 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF388767.1|CF388767 RTDR2_15_E07.g1_A021 Loblolly pine r... 287 5e-077
gb|CF393340.1|CF393340 RTDR3_20_H04.g1_A022 Loblolly pine r... 287 5e-077
gb|CF472959.1|CF472959 RTDS1_12_B12.g1_A015 Drought-stresse... 287 5e-077
gb|CO172219.1|CO172219 NDL1_28_E08.b1_A029 Needles control ... 287 5e-077
gb|CO370336.1|CO370336 RTK1_67_E12.b1_A029 Roots minus pota... 287 5e-077
gb|DN461230.1|DN461230 EST957029 Sequencing ESTs from loblo... 287 5e-077
gb|DR095604.1|DR095604 STRR1_22_G11.b1_A033 Stem Response R... 287 5e-077
emb|AJ864706.1| Pinus taeda mRNA for alpha-1,6-xylosyltrans... 287 5e-077
gb|DR054099.1|DR054099 RTCA1_15_F05.b1_A029 Roots minus cal... 285 3e-076
gb|DR054885.1|DR054885 RTCA1_20_D12.b1_A029 Roots minus cal... 284 4e-076
gb|DR688124.1|DR688124 EST1078208 Normalized pine embryo li... 279 1e-074
gb|CF672808.1|CF672808 RTCNT1_74_C07.b1_A029 Root control P... 248 2e-065
gb|DR025214.1|DR025214 STRS1_70_G04.b1_A034 Shoot tip pitch... 248 2e-065
gb|DR095677.1|DR095677 STRR1_22_G11.g1_A033 Stem Response R... 248 3e-065
gb|BM158356.1|BM158356 NXLV_033_B09_F NXLV (Nsf Xylem Late ... 232 2e-060
gb|CF395890.1|CF395890 RTDS2_19_B03.g1_A021 Drought-stresse... 232 3e-060
gb|BF778026.1|BF778026 NXSI_081_A11_F NXSI (Nsf Xylem Side ... 209 2e-053
gb|DR118257.1|DR118257 RTMG1_12_D08.b1_A029 Roots minus mag... 205 2e-052
gb|DR056665.1|DR056665 RTCA1_31_F06.g1_A029 Roots minus cal... 203 1e-051
gb|DR048568.1|DR048568 RTBOR1_9_F06.g1_A029 Roots plus adde... 202 3e-051
gb|BF777799.1|BF777799 NXSI_075_G11_F NXSI (Nsf Xylem Side ... 184 5e-046
gb|BM133233.1|BM133233 NXLV_003_B06_F NXLV (Nsf Xylem Late ... 183 1e-045
gb|BM368012.1|BM368012 NXLV_054_C10_F NXLV (Nsf Xylem Late ... 171 5e-042
gb|CO370167.1|CO370167 RTK1_65_H08.g1_A029 Roots minus pota... 170 9e-042
gb|CV036345.1|CV036345 RTNACL1_58_C11.g1_A029 Roots plus ad... 165 4e-040
gb|AA739576.1|AA739576 341 PtIFG2 Pinus taeda cDNA clone 85... 98 1e-038
gb|CO201179.1|CO201179 RTCNT2_4_D04.b1_A029 Root control 2 ... 157 7e-038
gb|CF388732.1|CF388732 RTDR2_15_E07.b1_A021 Loblolly pine r... 117 9e-026
gb|BQ197428.1|BQ197428 NXLV114_C03_F NXLV (Nsf Xylem Late w... 115 3e-025
gb|BE458078.1|BE458078 NXCI_005_G10_F NXCI (Nsf Xylem Compr... 113 1e-024
gb|DR683247.1|DR683247 EST1073323 Normalized pine embryo li... 57 9e-021
>gb|CF388767.1|CF388767 RTDR2_15_E07.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_15_E07_A021 5', mRNA
sequence
Length = 716
Score = 287 bits (622), Expect = 5e-077
Identities = 108/132 (81%), Positives = 119/132 (90%)
Frame = +2 / +3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 198 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 377
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDE
Sbjct: 378 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDE 557
Query: 362 LGLLHPAFKAVK 397
LGLLHPAFKAVK
Sbjct: 558 LGLLHPAFKAVK 593
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / -2
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 481 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 302
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 301 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 197
>gb|CF393340.1|CF393340 RTDR3_20_H04.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_20_H04_A022 5', mRNA
sequence
Length = 792
Score = 287 bits (622), Expect = 5e-077
Identities = 108/132 (81%), Positives = 119/132 (90%)
Frame = +2 / +3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 108 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 287
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDE
Sbjct: 288 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDE 467
Query: 362 LGLLHPAFKAVK 397
LGLLHPAFKAVK
Sbjct: 468 LGLLHPAFKAVK 503
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / -3
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 391 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 212
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 211 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 107
>gb|CF472959.1|CF472959 RTDS1_12_B12.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_12_B12_A015 5', mRNA sequence
Length = 793
Score = 287 bits (622), Expect = 5e-077
Identities = 108/132 (81%), Positives = 119/132 (90%)
Frame = +2 / +1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 22 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 201
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDE
Sbjct: 202 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDE 381
Query: 362 LGLLHPAFKAVK 397
LGLLHPAFKAVK
Sbjct: 382 LGLLHPAFKAVK 417
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / -3
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 305 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 126
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 125 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 21
>gb|CO172219.1|CO172219 NDL1_28_E08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_28_E08_A029 3', mRNA sequence
Length = 687
Score = 287 bits (622), Expect = 5e-077
Identities = 108/132 (81%), Positives = 119/132 (90%)
Frame = +2 / +3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 24 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 203
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDE
Sbjct: 204 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDE 383
Query: 362 LGLLHPAFKAVK 397
LGLLHPAFKAVK
Sbjct: 384 LGLLHPAFKAVK 419
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / -3
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 307 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 128
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 127 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 23
>gb|CO370336.1|CO370336 RTK1_67_E12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_67_E12_A029 3', mRNA sequence
Length = 778
Score = 287 bits (622), Expect = 5e-077
Identities = 108/132 (81%), Positives = 119/132 (90%)
Frame = +2 / +1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 70 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 249
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDE
Sbjct: 250 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDE 429
Query: 362 LGLLHPAFKAVK 397
LGLLHPAFKAVK
Sbjct: 430 LGLLHPAFKAVK 465
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / -3
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 353 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 174
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 173 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 69
>gb|DN461230.1|DN461230 EST957029 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPII789 5' end, mRNA sequence
Length = 917
Score = 287 bits (622), Expect = 5e-077
Identities = 108/132 (81%), Positives = 119/132 (90%)
Frame = +2 / +3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 183 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 362
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDE
Sbjct: 363 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDE 542
Query: 362 LGLLHPAFKAVK 397
LGLLHPAFKAVK
Sbjct: 543 LGLLHPAFKAVK 578
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / -2
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 466 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 287
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 286 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 182
>gb|DR095604.1|DR095604 STRR1_22_G11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_22_G11_A033 3', mRNA sequence
Length = 815
Score = 287 bits (622), Expect = 5e-077
Identities = 108/132 (81%), Positives = 119/132 (90%)
Frame = +2 / -3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 771 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 592
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDE
Sbjct: 591 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDE 412
Query: 362 LGLLHPAFKAVK 397
LGLLHPAFKAVK
Sbjct: 411 LGLLHPAFKAVK 376
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / +2
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 488 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 667
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 668 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 772
>emb|AJ864706.1| Pinus taeda mRNA for alpha-1,6-xylosyltransferase (x34.1 gene)
Length = 1473
Score = 287 bits (622), Expect = 5e-077
Identities = 108/132 (81%), Positives = 119/132 (90%)
Frame = +2 / +1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 955 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 1134
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDE
Sbjct: 1135 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDE 1314
Query: 362 LGLLHPAFKAVK 397
LGLLHPAFKAVK
Sbjct: 1315 LGLLHPAFKAVK 1350
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / -2
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 1238 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 1059
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 1058 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 954
>gb|DR054099.1|DR054099 RTCA1_15_F05.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_15_F05_A029 3', mRNA sequence
Length = 539
Score = 285 bits (616), Expect = 3e-076
Identities = 107/132 (81%), Positives = 118/132 (89%)
Frame = +2 / -2
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 481 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 302
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR V R RN+T PLE KDE
Sbjct: 301 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVXRTRNDTDKPLEVKDE 122
Query: 362 LGLLHPAFKAVK 397
LGLLHPAFKAVK
Sbjct: 121 LGLLHPAFKAVK 86
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / +3
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 198 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 377
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 378 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 482
>gb|DR054885.1|DR054885 RTCA1_20_D12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_20_D12_A029 3', mRNA sequence
Length = 755
Score = 284 bits (615), Expect = 4e-076
Identities = 107/132 (81%), Positives = 118/132 (89%)
Frame = +2 / +1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 22 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 201
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQI Q+YGFTHKSL+SR VKR RN+T PLE KDE
Sbjct: 202 PCGKVGDYPVAQCLRQMERAFNFGDNQIPQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDE 381
Query: 362 LGLLHPAFKAVK 397
LGLLHPAFKAVK
Sbjct: 382 LGLLHPAFKAVK 417
Score = 145 bits (311), Expect = 4e-034
Identities = 68/95 (71%), Positives = 72/95 (75%)
Frame = -1 / -1
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 305 VKP*ICGIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 126
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 125 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 21
>gb|DR688124.1|DR688124 EST1078208 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC107 3' end, mRNA sequence
Length = 790
Score = 279 bits (604), Expect = 1e-074
Identities = 104/128 (81%), Positives = 115/128 (89%)
Frame = +2 / +2
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 407 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 586
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDE
Sbjct: 587 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDE 766
Query: 362 LGLLHPAF 385
LGLLHPAF
Sbjct: 767 LGLLHPAF 790
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / -2
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 690 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 511
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 510 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 406
>gb|CF672808.1|CF672808 RTCNT1_74_C07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_C07_A029 3', mRNA sequence
Length = 679
Score = 248 bits (537), Expect = 2e-065
Identities = 88/133 (66%), Positives = 112/133 (84%)
Frame = +2 / +3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
+Y+L +Q++ WGDK +LE+ Y+LHG+W ++VD+YE+M+ Y PGLGD RWP VTHFVGCK
Sbjct: 60 IYLLISQKKLWGDKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCK 239
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCG +GDYPVERCLK+M+RAFNF DNQILQ+YGF HKSL + +VKR RNET++PLE KDE
Sbjct: 240 PCGSYGDYPVERCLKSMERAFNFADNQILQIYGFKHKSLNTAKVKRTRNETASPLEVKDE 419
Query: 362 LGLLHPAFKAVKT 400
LLHP+F A K+
Sbjct: 420 FNLLHPSFTASKS 458
Score = 106 bits (226), Expect = 2e-022
Identities = 53/85 (62%), Positives = 55/85 (64%)
Frame = -1 / -1
Query: 288 CVNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSI 109
C+ P I IWLS KL A SI R RSTG*SP LP GLHPTK VT GH SPSPG * +
Sbjct: 346 CLKP*I*SIWLSAKLKALSILFRQRSTG*SP*LPQGLHPTK*VTKGHLSSPSPGW*VRIM 167
Query: 108 SSYLSTKIPQ*PWR*YPFSR*ALSP 34
SSYLST Q P R Y SR LSP
Sbjct: 166 SSYLSTTTTQKP*RKYELSRNTLSP 92
>gb|DR025214.1|DR025214 STRS1_70_G04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_G04_A034 3', mRNA sequence
Length = 820
Score = 248 bits (537), Expect = 2e-065
Identities = 88/133 (66%), Positives = 112/133 (84%)
Frame = +2 / +3
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
+Y+L +Q++ WGDK +LE+ Y+LHG+W ++VD+YE+M+ Y PGLGD RWP VTHFVGCK
Sbjct: 204 IYLLISQKKLWGDKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCK 383
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDE 361
PCG +GDYPVERCLK+M+RAFNF DNQILQ+YGF HKSL + +VKR RNET++PLE KDE
Sbjct: 384 PCGSYGDYPVERCLKSMERAFNFADNQILQIYGFKHKSLNTAKVKRTRNETASPLEVKDE 563
Query: 362 LGLLHPAFKAVKT 400
LLHP+F A K+
Sbjct: 564 FNLLHPSFTASKS 602
Score = 106 bits (226), Expect = 2e-022
Identities = 53/85 (62%), Positives = 55/85 (64%)
Frame = -1 / -1
Query: 288 CVNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSI 109
C+ P I IWLS KL A SI R RSTG*SP LP GLHPTK VT GH SPSPG * +
Sbjct: 490 CLKP*I*SIWLSAKLKALSILFRQRSTG*SP*LPQGLHPTK*VTKGHLSSPSPGW*VRIM 311
Query: 108 SSYLSTKIPQ*PWR*YPFSR*ALSP 34
SSYLST Q P R Y SR LSP
Sbjct: 310 SSYLSTTTTQKP*RKYELSRNTLSP 236
>gb|DR095677.1|DR095677 STRR1_22_G11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_22_G11_A033 5', mRNA sequence
Length = 737
Score = 248 bits (536), Expect = 3e-065
Identities = 93/112 (83%), Positives = 102/112 (91%)
Frame = +2 / -2
Query: 62 YYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKNMDRA 241
YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCKPCGK GDYPV +CL+ M+RA
Sbjct: 727 YYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERA 548
Query: 242 FNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDELGLLHPAFKAVK 397
FNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDELGLLHPAFKAVK
Sbjct: 547 FNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGLLHPAFKAVK 392
Score = 120 bits (257), Expect = 1e-026
Identities = 55/74 (74%), Positives = 60/74 (81%)
Frame = -1 / +3
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 504 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 683
Query: 105 SYLSTKIPQ*PWR* 64
SYLST++PQ*P R*
Sbjct: 684 SYLSTRMPQ*P*R* 725
>gb|BM158356.1|BM158356 NXLV_033_B09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_033_B09 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 710
Score = 232 bits (501), Expect = 2e-060
Identities = 88/108 (81%), Positives = 97/108 (89%)
Frame = +2 / +1
Query: 74 GYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKNMDRAFNFG 253
GYWGILV +YEEM+E + PGLGDHRWPLVTHFVGCKPCGK GDYPV +CL+ M+RAFNFG
Sbjct: 19 GYWGILVVKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFG 198
Query: 254 DNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDELGLLHPAFKAVK 397
DNQILQ+YGFTHKSL+SR VKR RN+T PLE KDELGLLHPAFKAVK
Sbjct: 199 DNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGLLHPAFKAVK 342
Score = 118 bits (252), Expect = 5e-026
Identities = 52/71 (73%), Positives = 58/71 (81%)
Frame = -1 / -1
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 230 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 51
Query: 105 SYLSTKIPQ*P 73
SYL+T++PQ*P
Sbjct: 50 SYLTTRMPQ*P 18
>gb|CF395890.1|CF395890 RTDS2_19_B03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_19_B03_A021 5', mRNA sequence
Length = 537
Score = 232 bits (500), Expect = 3e-060
Identities = 84/102 (82%), Positives = 94/102 (92%)
Frame = +2 / +2
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
VY+L TQREKWGDK YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCK
Sbjct: 227 VYLLITQREKWGDKVYLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCK 406
Query: 182 PCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASR 307
PCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR
Sbjct: 407 PCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSR 532
Score = 147 bits (315), Expect = 1e-034
Identities = 68/95 (71%), Positives = 73/95 (76%)
Frame = -1 / -1
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V P IC+IWLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 510 VKP*ICRIWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 331
Query: 105 SYLSTKIPQ*PWR*YPFSR*ALSPHFSRCVARMYT 1
SYLST++PQ*P R* SR* LSPHFS CV YT
Sbjct: 330 SYLSTRMPQ*P*R**ALSR*TLSPHFSLCVISKYT 226
>gb|BF778026.1|BF778026 NXSI_081_A11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_081_A11 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 307
Score = 209 bits (451), Expect = 2e-053
Identities = 77/100 (77%), Positives = 85/100 (85%)
Frame = +2 / +2
Query: 47 YLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLK 226
YLE+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCKPCGK GDYPV +CL+
Sbjct: 2 YLESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLR 181
Query: 227 NMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPL 346
M+RAFNFGDNQ Q Y FTHKSL SR VKR RN+T PL
Sbjct: 182 QMERAFNFGDNQXXQXYXFTHKSLXSRGVKRTRNDTDKPL 301
Score = 114 bits (243), Expect = 9e-025
Identities = 55/80 (68%), Positives = 59/80 (73%)
Frame = -1 / -2
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V C WLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 240 VKXXXCXXWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 61
Query: 105 SYLSTKIPQ*PWR*YPFSR* 46
SYLST++PQ*P R* SR*
Sbjct: 60 SYLSTRMPQ*P*R**ALSR* 1
>gb|DR118257.1|DR118257 RTMG1_12_D08.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_12_D08_A029 3', mRNA sequence
Length = 728
Score = 205 bits (443), Expect = 2e-052
Identities = 78/96 (81%), Positives = 86/96 (89%)
Frame = +2 / +1
Query: 110 MLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTH 289
M+E + PGLGDHRWPLVTHFVGCKPCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTH
Sbjct: 1 MMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTH 180
Query: 290 KSLASRRVKRIRNETSNPLETKDELGLLHPAFKAVK 397
KSL+SR VKR RN+T PLE KDELGLLHPAFKAVK
Sbjct: 181 KSLSSRGVKRTRNDTDKPLEVKDELGLLHPAFKAVK 288
>gb|DR056665.1|DR056665 RTCA1_31_F06.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_31_F06_A029 5', mRNA sequence
Length = 597
Score = 203 bits (438), Expect = 1e-051
Identities = 77/95 (81%), Positives = 85/95 (89%)
Frame = +2 / -2
Query: 113 LENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHK 292
+E + PGLGDHRWPLVTHFVGCKPCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHK
Sbjct: 596 MEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHK 417
Query: 293 SLASRRVKRIRNETSNPLETKDELGLLHPAFKAVK 397
SL+SR VKR RN+T PLE KDELGLLHPAFKAVK
Sbjct: 416 SLSSRGVKRTRNDTDKPLEVKDELGLLHPAFKAVK 312
>gb|DR048568.1|DR048568 RTBOR1_9_F06.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_9_F06_A029 5', mRNA sequence
Length = 779
Score = 202 bits (435), Expect = 3e-051
Identities = 74/105 (70%), Positives = 89/105 (84%)
Frame = +2 / -1
Query: 86 ILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKNMDRAFNFGDNQI 265
++VD+YE+M+ Y PGLGD RWP VTHFVGCKPCG +GDYPVERCLK+M+RAFNF DNQI
Sbjct: 779 VVVDKYEDMIRTYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLKSMERAFNFADNQI 600
Query: 266 LQMYGFTHKSLASRRVKRIRNETSNPLETKDELGLLHPAFKAVKT 400
LQ+YGF HKSL + +VKR RNET++PLE KDE LLHP+F A K+
Sbjct: 599 LQIYGFKHKSLNTAKVKRTRNETASPLEVKDEFNLLHPSFTASKS 465
>gb|BF777799.1|BF777799 NXSI_075_G11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_075_G11 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 443
Score = 184 bits (397), Expect = 5e-046
Identities = 70/85 (82%), Positives = 76/85 (89%)
Frame = +2 / +3
Query: 143 HRWPLVTHFVGCKPCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRI 322
HRWPLVTHFVGCKPCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR
Sbjct: 3 HRWPLVTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRT 182
Query: 323 RNETSNPLETKDELGLLHPAFKAVK 397
RN+T PLE KDELGLLHPAFK VK
Sbjct: 183 RNDTDKPLEVKDELGLLHPAFKXVK 257
>gb|BM133233.1|BM133233 NXLV_003_B06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_003_B06 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 278
Score = 183 bits (394), Expect = 1e-045
Identities = 67/91 (73%), Positives = 75/91 (82%)
Frame = +2 / +2
Query: 35 GDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVE 214
G +E+ YYLHGYWGILVD+YEEM+E + PGLGDHRWPLVTHFVGCKPCGK GDYPV
Sbjct: 2 GHYGRVESAYYLHGYWGILVDKYEEMMEKHHPGLGDHRWPLVTHFVGCKPCGKVGDYPVA 181
Query: 215 RCLKNMDRAFNFGDNQILQMYGFTHKSLASR 307
+CL+ M+RAFNFGDNQ Q FTHKSL SR
Sbjct: 182 QCLRQMERAFNFGDNQXXQXXXFTHKSLXSR 274
Score = 114 bits (243), Expect = 9e-025
Identities = 53/74 (71%), Positives = 57/74 (77%)
Frame = -1 / -3
Query: 285 VNPYICKIWLSPKLNARSIFLRHRSTG*SPNLPHGLHPTKCVTSGHR*SPSPGL*FSSIS 106
V IC WLSPKL ARSI L+H +TG*SP LP GL PTK VTSG R*SPSPG FS IS
Sbjct: 252 VKXXICXXWLSPKLKARSICLKHCATG*SPTLPQGLQPTK*VTSGQR*SPSPGWCFSIIS 73
Query: 105 SYLSTKIPQ*PWR* 64
SYLST++PQ*P R*
Sbjct: 72 SYLSTRMPQ*P*R* 31
>gb|BM368012.1|BM368012 NXLV_054_C10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_054_C10 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 381
Score = 171 bits (368), Expect = 5e-042
Identities = 64/88 (72%), Positives = 74/88 (84%)
Frame = +2 / +3
Query: 137 GDHRWPLVTHFVGCKPCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVK 316
GD RWP VTHFVGCKPCG +GDYPVERCLK+M+RAFNF DNQILQ+YGF HKSL + +VK
Sbjct: 51 GDERWPFVTHFVGCKPCGSYGDYPVERCLKSMERAFNFADNQILQIYGFKHKSLNTXKVK 230
Query: 317 RIRNETSNPLETKDELGLLHPAFKAVKT 400
R NET++PLE KDE LLHP+F A K+
Sbjct: 231 RTXNETASPLEVKDEXNLLHPSFTASKS 314
>gb|CO370167.1|CO370167 RTK1_65_H08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H08_A029 5', mRNA sequence
Length = 668
Score = 170 bits (366), Expect = 9e-042
Identities = 66/80 (82%), Positives = 72/80 (90%)
Frame = +2 / -1
Query: 158 VTHFVGCKPCGKFGDYPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETS 337
VTHFVGCKPCGK GDYPV +CL+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T
Sbjct: 668 VTHFVGCKPCGKVGDYPVAQCLRQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTD 489
Query: 338 NPLETKDELGLLHPAFKAVK 397
PLE KDELGLLHPAFKAVK
Sbjct: 488 KPLEVKDELGLLHPAFKAVK 429
>gb|CV036345.1|CV036345 RTNACL1_58_C11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_58_C11_A029 5', mRNA sequence
Length = 691
Score = 165 bits (354), Expect = 4e-040
Identities = 54/83 (65%), Positives = 71/83 (85%)
Frame = +2 / +2
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
+Y+L +Q++ WGDK +LE+ Y+LHG+W ++VD+YE+M+ Y PGLGD RWP VTHFVGCK
Sbjct: 440 IYLLISQKKLWGDKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCK 619
Query: 182 PCGKFGDYPVERCLKNMDRAFNF 250
PCG + DYPVERCLK+M+RAFNF
Sbjct: 620 PCGSYRDYPVERCLKSMERAFNF 688
>gb|AA739576.1|AA739576 341 PtIFG2 Pinus taeda cDNA clone 8559M 3', mRNA sequence
Length = 651
Score = 97.7 bits (207), Expect(2) = 1e-038
Identities = 35/56 (62%), Positives = 43/56 (76%)
Frame = +2 / +2
Query: 71 HGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKNMDR 238
HG+ ++VD+YE M+ Y GLGD R V HFVGCKPCG +GDYPVERCLK+M+R
Sbjct: 2 HGFXVVVVDKYENMIXTYHLGLGDERCLFVIHFVGCKPCGXYGDYPVERCLKSMER 169
Score = 82.6 bits (174), Expect(2) = 1e-038
Identities = 33/55 (60%), Positives = 41/55 (74%)
Frame = +2 / +1
Query: 236 RAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDELGLLHPAFKAVKT 400
+AFNF DNQ Q+YGF HKSL + +VKR RNET++ LE KDE LHP+F A K+
Sbjct: 166 KAFNFADNQXXQIYGFKHKSLNTAKVKRTRNETASLLEVKDEFNXLHPSFXASKS 330
>gb|CO201179.1|CO201179 RTCNT2_4_D04.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_D04_A029 3', mRNA sequence
Length = 817
Score = 157 bits (338), Expect = 7e-038
Identities = 51/80 (63%), Positives = 68/80 (85%)
Frame = +2 / -1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCK 181
+Y+L +Q++ WGDK +LE+ Y+LHG+W ++VD+YE+M+ Y PGLGD RWP VTHFVGCK
Sbjct: 241 IYLLISQKKLWGDKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCK 62
Query: 182 PCGKFGDYPVERCLKNMDRA 241
PCG +GDYPVERCLK+M+ A
Sbjct: 61 PCGSYGDYPVERCLKSMETA 2
>gb|CF388732.1|CF388732 RTDR2_15_E07.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_15_E07_A021 3', mRNA
sequence
Length = 514
Score = 117 bits (250), Expect = 9e-026
Identities = 47/58 (81%), Positives = 52/58 (89%)
Frame = +2 / +3
Query: 224 KNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRNETSNPLETKDELGLLHPAFKAVK 397
+ M+RAFNFGDNQILQ+YGFTHKSL+SR VKR RN+T PLE KDELGLLHPAFKAVK
Sbjct: 3 RQMERAFNFGDNQILQIYGFTHKSLSSRGVKRTRNDTDKPLEVKDELGLLHPAFKAVK 176
>gb|BQ197428.1|BQ197428 NXLV114_C03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV114_C03 5' similar to Arabidopsis thaliana
sequence At4g02500 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 208
Score = 115 bits (246), Expect = 3e-025
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = +2 / +1
Query: 32 WGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFVGCKPCGKFGDYPV 211
W K +LE+ Y+LHG+W ++VD+YE+M+ Y PGLGD RWP VTHFVGC CG +G YPV
Sbjct: 7 WPGKVFLESSYFLHGFWVVVVDKYEDMIRTYHPGLGDERWPFVTHFVGCMLCGSYGYYPV 186
Query: 212 ERC 220
+ C
Sbjct: 187 DPC 195
>gb|BE458078.1|BE458078 NXCI_005_G10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_005_G10 5' similar to Arabidopsis
thaliana sequence At3g62720 alpha
galactosyltransferase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 298
Score = 113 bits (242), Expect = 1e-024
Identities = 42/57 (73%), Positives = 47/57 (82%)
Frame = +2 / +1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYKPGLGDHRWPLVTHFV 172
VY+L TQREKWGDK YLE+ YYLH YWGILVD+Y M+E + PGLGDHR LVTHFV
Sbjct: 127 VYLLITQREKWGDKVYLESAYYLHXYWGILVDKYXXMMEKHHPGLGDHRXXLVTHFV 297
>gb|DR683247.1|DR683247 EST1073323 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAF41, mRNA sequence
Length = 693
Score = 57.0 bits (118), Expect(3) = 9e-021
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +2 / -1
Query: 2 VYILATQREKWGDKAYLENGYYLHGYWGILVDRYEEMLENYK 127
VY+L +++KW D+ ++E+ YYL+GYW +V YE + E Y+
Sbjct: 642 VYLLLKEKDKWADRIFIEHKYYLNGYWLDIVGTYENITEKYE 517
Score = 51.5 bits (106), Expect(3) = 9e-021
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +2 / -1
Query: 203 YPVERCLKNMDRAFNFGDNQILQMYGFTHKSLASRRVKRIRN 328
Y E C K M+RA NF D+Q+L+ YGF H +L S V I++
Sbjct: 315 YKGENCWKGMERALNFADDQVLKNYGFRHDNLQSSHVNPIQS 190
Score = 32.2 bits (64), Expect(3) = 9e-021
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / -1
Query: 146 RWPLVTHFVGCKPC 187
R P VTHF GC+PC
Sbjct: 378 RRPFVTHFTGCQPC 337
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 421,319,641
Number of Sequences: 355925
Number of extensions: 6155123
Number of successful extensions: 40873
Number of sequences better than 1.0e-020: 41
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10675693710
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)