TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276392.2.1
(644 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO158538.1|CO158538 FLD1_7_C05.g1_A029 Root flooded Pinu... 205 2e-052
gb|CX712435.1|CX712435 RTPQ1_2_B07.g2_A032 Roots treated wi... 205 2e-052
gb|DR021458.1|DR021458 STRS1_44_F12.g1_A034 Shoot tip pitch... 205 2e-052
gb|AW042692.1|AW042692 ST23D06 Pine TriplEx shoot tip libra... 204 7e-052
gb|AW290179.1|AW290179 NXNV015A05F Nsf Xylem Normal wood Ve... 204 7e-052
gb|AW982027.1|AW982027 PC23A03 Pine TriplEx pollen cone lib... 204 7e-052
gb|AL750317.1|AL750317 AL750317 RN Pinus pinaster cDNA clon... 204 7e-052
gb|BX249526.1|BX249526 BX249526 Pinus pinaster differenciat... 204 7e-052
gb|BX250231.1|BX250231 BX250231 Pinus pinaster differenciat... 204 7e-052
gb|BX252257.1|BX252257 BX252257 Pinus pinaster differenciat... 204 7e-052
gb|BX252258.1|BX252258 BX252258 Pinus pinaster differenciat... 204 7e-052
gb|BX253440.1|BX253440 BX253440 Pinus pinaster differenciat... 204 7e-052
gb|BE496395.1|BE496395 NXCI_017_D01_F NXCI (Nsf Xylem Compr... 204 7e-052
gb|BF010485.1|BF010485 NXCI_084_E08_F NXCI (Nsf Xylem Compr... 204 7e-052
gb|BF609105.1|BF609105 NXSI_040_D10_F NXSI (Nsf Xylem Side ... 204 7e-052
gb|BG040349.1|BG040349 NXSI_107_C07_F NXSI (Nsf Xylem Side ... 204 7e-052
gb|BQ699020.1|BQ699020 NXRV118_D10_F NXRV (Nsf Xylem Root w... 204 7e-052
gb|BQ699236.1|BQ699236 NXRV121_B09_F NXRV (Nsf Xylem Root w... 204 7e-052
gb|BQ700831.1|BQ700831 NXRV112_A06_F NXRV (Nsf Xylem Root w... 204 7e-052
gb|CD026825.1|CD026825 NXNV015A05 Nsf Xylem Normal wood Ver... 204 7e-052
gb|CF392690.1|CF392690 RTDR3_5_E02.g1_A022 Loblolly pine ro... 204 7e-052
gb|CF395922.1|CF395922 RTDS2_19_G07.g1_A021 Drought-stresse... 204 7e-052
gb|CF470303.1|CF470303 RTDS1_18_D01.g1_A015 Drought-stresse... 204 7e-052
gb|CF471664.1|CF471664 RTDS1_6_G10.b1_A015 Drought-stressed... 204 7e-052
gb|BX676882.1|BX676882 BX676882 RN Pinus pinaster cDNA clon... 204 7e-052
gb|BX682720.1|BX682720 BX682720 Pinus pinaster differenciat... 204 7e-052
gb|CO165995.1|CO165995 FLD1_58_C11.g1_A029 Root flooded Pin... 204 7e-052
gb|CO361147.1|CO361147 NDL2_3_C03.b1_A029 Needles control 2... 204 7e-052
gb|CV035135.1|CV035135 RTNACL1_13_G07.g1_A029 Roots plus ad... 204 7e-052
gb|CV036384.1|CV036384 RTNACL1_58_H09.g1_A029 Roots plus ad... 204 7e-052
gb|CX646462.1|CX646462 COLD1_9_B07.g1_A029 Root cold Pinus ... 204 7e-052
gb|CX648845.1|CX648845 COLD1_31_G04.b1_A029 Root cold Pinus... 204 7e-052
gb|CX648922.1|CX648922 COLD1_31_G04.g1_A029 Root cold Pinus... 204 7e-052
gb|CX651289.1|CX651289 COLD1_51_H09.b1_A029 Root cold Pinus... 204 7e-052
gb|CX651369.1|CX651369 COLD1_51_H09.g1_A029 Root cold Pinus... 204 7e-052
gb|CX715540.1|CX715540 RTPQ1_34_G10.g1_A032 Roots treated w... 204 7e-052
gb|DR088564.1|DR088564 RTAL1_2_F09.g1_A029 Roots plus added... 204 7e-052
gb|DR167170.1|DR167170 RTPHOS1_17_D09.b1_A029 Roots minus p... 204 7e-052
gb|DR744690.1|DR744690 RTCU1_24_E12.b1_A029 Roots plus adde... 204 7e-052
gb|DR745218.1|DR745218 RTCU1_27_H05.g1_A029 Roots plus adde... 204 7e-052
gb|BF518220.1|BF518220 NXSI_036_E04_F NXSI (Nsf Xylem Side ... 201 4e-051
gb|BE643823.1|BE643823 NXCI_047_F11_F NXCI (Nsf Xylem Compr... 200 6e-051
gb|BE209319.1|BE209319 NXNV_166_C12_F Nsf Xylem Normal wood... 200 8e-051
gb|BE496610.1|BE496610 NXCI_021_G01_F NXCI (Nsf Xylem Compr... 199 1e-050
gb|CF470550.1|CF470550 RTDS1_13_E11.b1_A015 Drought-stresse... 199 2e-050
gb|CF470616.1|CF470616 RTDS1_13_E11.g1_A015 Drought-stresse... 199 2e-050
gb|DR744762.1|DR744762 RTCU1_24_E12.g1_A029 Roots plus adde... 199 2e-050
gb|BG040040.1|BG040040 NXSI_105_H03_F NXSI (Nsf Xylem Side ... 197 6e-050
gb|BQ697224.1|BQ697224 NXPV_051_A06_F NXPV (Nsf Xylem Plani... 197 6e-050
gb|CV035055.1|CV035055 RTNACL1_13_G07.b1_A029 Roots plus ad... 197 8e-050
gb|BE209328.1|BE209328 NXNV_166_D11_F Nsf Xylem Normal wood... 191 3e-048
gb|BG317448.1|BG317448 NXPV_001_H10_F NXPV (Nsf Xylem Plani... 188 3e-047
gb|AW289731.1|AW289731 NXNV005H09F Nsf Xylem Normal wood Ve... 187 6e-047
gb|CD028348.1|CD028348 NXNV005H09 Nsf Xylem Normal wood Ver... 187 6e-047
gb|BE452008.1|BE452008 NXCI_007_C12_F NXCI (Nsf Xylem Compr... 184 4e-046
gb|BQ697040.1|BQ697040 NXPV_048_E08_F NXPV (Nsf Xylem Plani... 182 2e-045
gb|BF610330.1|BF610330 NXSI_057_H08_F NXSI (Nsf Xylem Side ... 181 4e-045
gb|BX681771.1|BX681771 BX681771 RS Pinus pinaster cDNA clon... 180 7e-045
gb|CR392712.1|CR392712 CR392712 RN Pinus pinaster cDNA clon... 177 7e-044
gb|DR016754.1|DR016754 STRS1_12_A09.b1_A034 Shoot tip pitch... 173 8e-043
gb|AW226048.1|AW226048 ST76G04 Pine TriplEx shoot tip libra... 172 2e-042
gb|BE187400.1|BE187400 NXNV_163_E06_F Nsf Xylem Normal wood... 171 4e-042
gb|AW758637.1|AW758637 NXNV_084_E03_F Nsf Xylem Normal wood... 170 8e-042
gb|CF665886.1|CF665886 RTCNT1_19_F01.b1_A029 Root control P... 167 7e-041
gb|DR388591.1|DR388591 RTHG1_29_F03.b1_A029 Roots plus adde... 167 7e-041
gb|DR745149.1|DR745149 RTCU1_27_H05.b1_A029 Roots plus adde... 165 3e-040
gb|AL750318.1|AL750318 AL750318 RN Pinus pinaster cDNA clon... 160 6e-039
gb|DR016831.1|DR016831 STRS1_12_A09.g1_A034 Shoot tip pitch... 160 8e-039
gb|BM367137.1|BM367137 NXLV_045_B03_F NXLV (Nsf Xylem Late ... 157 6e-038
gb|AW289956.1|AW289956 NXNV008B09F Nsf Xylem Normal wood Ve... 157 8e-038
gb|CD026597.1|CD026597 NXNV008B09 Nsf Xylem Normal wood Ver... 157 8e-038
gb|BQ197456.1|BQ197456 NXLV114_F05_F NXLV (Nsf Xylem Late w... 154 5e-037
gb|CF395863.1|CF395863 RTDS2_19_G07.b1_A021 Drought-stresse... 150 7e-036
gb|BG275457.1|BG275457 NXSI_139_A08_F NXSI (Nsf Xylem Side ... 137 9e-032
gb|DN626735.1|DN626735 EST977551 Subtracted pine embryo lib... 136 2e-031
gb|DN632945.1|DN632945 EST983761 Subtracted pine embryo lib... 136 2e-031
gb|BF777173.1|BF777173 NXSI_066_C03_F NXSI (Nsf Xylem Side ... 134 4e-031
gb|DN614818.1|DN614818 EST967868 Subtracted pine embryo lib... 134 4e-031
gb|DT629098.1|DT629098 EST1155668 Subtracted pine embryo li... 134 4e-031
gb|BG275322.1|BG275322 NXSI_142_C03_F NXSI (Nsf Xylem Side ... 133 2e-030
gb|CF470225.1|CF470225 RTDS1_18_D01.b1_A015 Drought-stresse... 132 2e-030
gb|BX254650.1|BX254650 BX254650 Pinus pinaster differenciat... 131 4e-030
gb|CD021794.1|CD021794 NXNV_139_D08_F Nsf Xylem Normal wood... 123 9e-028
gb|AW754712.1|AW754712 PC05E08 Pine TriplEx pollen cone lib... 92 9e-027
gb|BF777917.1|BF777917 NXSI_078_F03_F NXSI (Nsf Xylem Side ... 115 4e-025
gb|AW043347.1|AW043347 ST32C07 Pine TriplEx shoot tip libra... 112 3e-024
gb|BX681218.1|BX681218 BX681218 RS Pinus pinaster cDNA clon... 110 9e-024
gb|AW290696.1|AW290696 NXNV045E03F Nsf Xylem Normal wood Ve... 109 2e-023
gb|CD027358.1|CD027358 NXNV045E03 Nsf Xylem Normal wood Ver... 109 2e-023
gb|CO158463.1|CO158463 FLD1_7_C05.b1_A029 Root flooded Pinu... 103 1e-021
>gb|CO158538.1|CO158538 FLD1_7_C05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_C05_A029 5', mRNA sequence
Length = 731
Score = 205 bits (443), Expect = 2e-052
Identities = 83/96 (86%), Positives = 92/96 (95%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+MVQRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 154 EMVQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 333
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 334 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 441
Score = 165 bits (354), Expect = 3e-040
Identities = 76/119 (63%), Positives = 81/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L+ SL F IF TF TIFCSSTK A +I S TA PD+TPP TVL FL +LDLLYSA
Sbjct: 512 LVVCFSLDF*IFKTFLTIFCSSTKNALIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSA 333
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIP I FPVTGH GPLA F W + PPGV T VW D VA*L R R VS CTI
Sbjct: 332 GLRWGIP*ILFPVTGHLGPLALFFAVW*INLPPGVFKTLVWLDFVA*LWRLRYVSLCTI 156
>gb|CX712435.1|CX712435 RTPQ1_2_B07.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_2_B07_A032 5', mRNA sequence
Length = 764
Score = 205 bits (443), Expect = 2e-052
Identities = 83/96 (86%), Positives = 92/96 (95%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+MVQRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 118 EMVQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 297
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 298 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 405
Score = 166 bits (358), Expect = 1e-040
Identities = 76/119 (63%), Positives = 80/119 (67%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK A +I S TA PD+TPP TVL FL +LDLLYSA
Sbjct: 476 LAVCFSLDFCIFKTFLTIFCSSTKNALIIRSRTAEPDKTPP*ALLTVLRFLLSLDLLYSA 297
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIP I PVTGH GPLA F WY + PPGV T VW D VA*L R R VS CTI
Sbjct: 296 GLRWGIP*ILLPVTGHLGPLALFFAVWYINLPPGVFKTLVWLDFVA*LWRLRYVSLCTI 120
>gb|DR021458.1|DR021458 STRS1_44_F12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_44_F12_A034 5', mRNA sequence
Length = 691
Score = 205 bits (443), Expect = 2e-052
Identities = 83/96 (86%), Positives = 92/96 (95%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+MVQRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 58 EMVQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 237
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 238 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 345
Score = 162 bits (348), Expect = 2e-039
Identities = 75/119 (63%), Positives = 80/119 (67%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L+ SL F IF TF TIFCSSTK A +I S TA PD+TPP TVL FL +LDLLYSA
Sbjct: 416 LVVCFSLDF*IFKTFLTIFCSSTKNALIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSA 237
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIP I PVTGH GPLA F W + PPGV T VW D VA*L R R VS CTI
Sbjct: 236 GLRWGIP*ILLPVTGHLGPLALFFAVW*INLPPGVFKTLVWLDFVA*LWRLRYVSLCTI 60
>gb|AW042692.1|AW042692 ST23D06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST23D06, mRNA sequence
Length = 596
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 115 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 294
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 295 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 402
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 473 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 294
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 293 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 117
>gb|AW290179.1|AW290179 NXNV015A05F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015A05 5', mRNA sequence
Length = 488
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 62 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 241
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 242 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 349
Score = 174 bits (375), Expect = 4e-043
Identities = 76/111 (68%), Positives = 78/111 (70%)
Frame = -3 / -3
Query: 393 FWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSAGLRCGIPW 214
F IF F TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSAGLR GIPW
Sbjct: 396 F*IFKXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGIPW 217
Query: 213 IFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
I PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 216 ILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 64
>gb|AW982027.1|AW982027 PC23A03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC23A03, mRNA sequence
Length = 585
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 31 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 210
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 211 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 318
Score = 181 bits (390), Expect = 4e-045
Identities = 81/119 (68%), Positives = 83/119 (69%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 389 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 210
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA FL WY S PPGV T VW D VA*L R R VS C I
Sbjct: 209 GLRWGIPWILLPVTGHLGPLALFLAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 33
>gb|AL750317.1|AL750317 AL750317 RN Pinus pinaster cDNA clone RN01A10 similar to RP L34,
mRNA sequence
Length = 417
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 57 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 236
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 237 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 344
Score = 175 bits (377), Expect = 2e-043
Identities = 78/119 (65%), Positives = 81/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PD+TPP TVL FL +LDLLYSA
Sbjct: 415 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSA 236
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 235 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA*LWRLRYVSLCAI 59
>gb|BX249526.1|BX249526 BX249526 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP025A12 similar to 60S RIBOSOMAL PROTEIN
L34, mRNA sequence
Length = 676
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 92 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 271
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 272 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 379
Score = 175 bits (377), Expect = 2e-043
Identities = 78/119 (65%), Positives = 81/119 (68%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PD+TPP TVL FL +LDLLYSA
Sbjct: 450 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSA 271
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 270 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA*LWRLRYVSLCAI 94
>gb|BX250231.1|BX250231 BX250231 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP034A07 similar to 60S RIBOSOMAL PROTEIN
L34, mRNA sequence
Length = 619
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 61 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 240
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 241 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 348
Score = 175 bits (377), Expect = 2e-043
Identities = 78/119 (65%), Positives = 81/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PD+TPP TVL FL +LDLLYSA
Sbjct: 419 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSA 240
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 239 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA*LWRLRYVSLCAI 63
>gb|BX252257.1|BX252257 BX252257 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP062A06 similar to 60S RIBOSOMAL PROTEIN
L34, mRNA sequence
Length = 694
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 158 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 337
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 338 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 445
Score = 175 bits (377), Expect = 2e-043
Identities = 78/119 (65%), Positives = 81/119 (68%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PD+TPP TVL FL +LDLLYSA
Sbjct: 516 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSA 337
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 336 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA*LWRLRYVSLCAI 160
>gb|BX252258.1|BX252258 BX252258 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP062A07 similar to 60S RIBOSOMAL PROTEIN
L34, mRNA sequence
Length = 702
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 158 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 337
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 338 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 445
Score = 175 bits (377), Expect = 2e-043
Identities = 78/119 (65%), Positives = 81/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PD+TPP TVL FL +LDLLYSA
Sbjct: 516 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSA 337
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 336 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA*LWRLRYVSLCAI 160
>gb|BX253440.1|BX253440 BX253440 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083E07 similar to 60S RIBOSOMAL PROTEIN
L34, mRNA sequence
Length = 620
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 61 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 240
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 241 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 348
Score = 175 bits (377), Expect = 2e-043
Identities = 78/119 (65%), Positives = 81/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PD+TPP TVL FL +LDLLYSA
Sbjct: 419 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSA 240
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 239 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA*LWRLRYVSLCAI 63
>gb|BE496395.1|BE496395 NXCI_017_D01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_D01 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 558
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 51 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 230
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 231 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 338
Score = 173 bits (373), Expect = 8e-043
Identities = 77/114 (67%), Positives = 79/114 (69%)
Frame = -3 / -3
Query: 402 SLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSAGLRCG 223
SL F IF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSAGLR G
Sbjct: 394 SLDF*IFKXXLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWG 215
Query: 222 IPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
IPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 214 IPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 53
>gb|BF010485.1|BF010485 NXCI_084_E08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_084_E08 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 395
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 51 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 230
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 231 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 338
Score = 174 bits (375), Expect = 4e-043
Identities = 77/113 (68%), Positives = 79/113 (69%)
Frame = -3 / -2
Query: 399 LVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSAGLRCGI 220
L F IF F TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSAGLR GI
Sbjct: 391 LDF*IFXXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGI 212
Query: 219 PWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
PWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 211 PWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 53
>gb|BF609105.1|BF609105 NXSI_040_D10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_040_D10 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 83 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 262
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 263 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 370
Score = 177 bits (381), Expect = 7e-044
Identities = 79/119 (66%), Positives = 81/119 (68%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF F TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 441 LAVCFSLDF*IFKXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 262
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 261 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 85
>gb|BG040349.1|BG040349 NXSI_107_C07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_107_C07 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 528
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 34 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 213
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 214 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 321
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 392 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 213
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 212 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 36
>gb|BQ699020.1|BQ699020 NXRV118_D10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV118_D10 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 567
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 65 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 244
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 245 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 352
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 423 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 244
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 243 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 67
>gb|BQ699236.1|BQ699236 NXRV121_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_B09 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 568
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 154 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 333
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 334 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 441
Score = 172 bits (371), Expect = 2e-042
Identities = 75/109 (68%), Positives = 77/109 (70%)
Frame = -3 / -3
Query: 387 IFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSAGLRCGIPWIF 208
IF T TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSAGLR GIPWI
Sbjct: 482 IFKTXLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGIPWIL 303
Query: 207 FPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 302 LPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 156
>gb|BQ700831.1|BQ700831 NXRV112_A06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV112_A06 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 521
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 65 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 244
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 245 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 352
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 423 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 244
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 243 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 67
>gb|CD026825.1|CD026825 NXNV015A05 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV015A05 5' similar to Arabidopsis thaliana sequence
At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 488
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 62 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 241
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 242 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 349
Score = 174 bits (375), Expect = 4e-043
Identities = 76/111 (68%), Positives = 78/111 (70%)
Frame = -3 / -3
Query: 393 FWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSAGLRCGIPW 214
F IF F TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSAGLR GIPW
Sbjct: 396 F*IFKXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGIPW 217
Query: 213 IFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
I PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 216 ILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 64
>gb|CF392690.1|CF392690 RTDR3_5_E02.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_E02_A022 5', mRNA
sequence
Length = 500
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 11 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 190
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 191 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 298
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 369 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 190
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 189 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 13
>gb|CF395922.1|CF395922 RTDS2_19_G07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_19_G07_A021 5', mRNA sequence
Length = 736
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 93 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 272
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 273 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 380
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 451 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 272
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 271 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 95
>gb|CF470303.1|CF470303 RTDS1_18_D01.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_18_D01_A015 5', mRNA sequence
Length = 735
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 79 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 258
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 259 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 366
Score = 172 bits (371), Expect = 2e-042
Identities = 79/119 (66%), Positives = 81/119 (68%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 437 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 258
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T V D VA*L R R VS C I
Sbjct: 257 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLV*LDFVA*LWRLRYVSLCAI 81
>gb|CF471664.1|CF471664 RTDS1_6_G10.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_6_G10_A015 3', mRNA sequence
Length = 635
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 109 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 288
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 289 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 396
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 467 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 288
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 287 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 111
>gb|BX676882.1|BX676882 BX676882 RN Pinus pinaster cDNA clone RN13D08, mRNA sequence
Length = 420
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 107 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 286
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 287 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 394
Score = 161 bits (346), Expect = 4e-039
Identities = 70/103 (67%), Positives = 72/103 (69%)
Frame = -3 / -1
Query: 369 TIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSAGLRCGIPWIFFPVTGH 190
TIFCSSTK AR+I S TA PD TPP TVL FL +LDLLYSAGLR GIPWI PVTGH
Sbjct: 417 TIFCSSTKNARIIRSRTAEPDNTPP*ALLTVLLFLLSLDLLYSAGLRWGIPWILLPVTGH 238
Query: 189 FGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 237 LGPLALFFAVWYISLPPGVFKTLVWLDFVA*LWRLRYVSLCAI 109
>gb|BX682720.1|BX682720 BX682720 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 120F02 similar to 60S ribosomal protein L34,
mRNA sequence
Length = 553
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 56 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 235
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 236 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 343
Score = 175 bits (377), Expect = 2e-043
Identities = 78/119 (65%), Positives = 81/119 (68%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PD+TPP TVL FL +LDLLYSA
Sbjct: 414 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDKTPP*ALLTVLLFLLSLDLLYSA 235
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 234 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFKTLVWLDFVA*LWRLRYVSLCAI 58
>gb|CO165995.1|CO165995 FLD1_58_C11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_C11_A029 5', mRNA sequence
Length = 853
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / -3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 482 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 303
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 302 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 195
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / +1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 124 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 303
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 304 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 480
>gb|CO361147.1|CO361147 NDL2_3_C03.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_3_C03_A029 3', mRNA sequence
Length = 790
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / -2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 768 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 589
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 588 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 481
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / +2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 410 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 589
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 590 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 766
>gb|CV035135.1|CV035135 RTNACL1_13_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_G07_A029 5', mRNA sequence
Length = 710
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 73 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 252
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 253 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 360
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 431 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 252
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 251 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 75
>gb|CV036384.1|CV036384 RTNACL1_58_H09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_58_H09_A029 5', mRNA sequence
Length = 620
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 113 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 292
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 293 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 400
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 471 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 292
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 291 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 115
>gb|CX646462.1|CX646462 COLD1_9_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_B07_A029 5', mRNA sequence
Length = 822
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 103 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 282
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 283 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 390
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 461 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 282
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 281 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 105
>gb|CX648845.1|CX648845 COLD1_31_G04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_31_G04_A029 3', mRNA sequence
Length = 659
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 29 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 208
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 209 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 316
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 387 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 208
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 207 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 31
>gb|CX648922.1|CX648922 COLD1_31_G04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_31_G04_A029 5', mRNA sequence
Length = 524
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 105 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 284
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 285 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 392
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 463 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 284
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 283 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 107
>gb|CX651289.1|CX651289 COLD1_51_H09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_51_H09_A029 3', mRNA sequence
Length = 699
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 71 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 250
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 251 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 358
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 429 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 250
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 249 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 73
>gb|CX651369.1|CX651369 COLD1_51_H09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_51_H09_A029 5', mRNA sequence
Length = 604
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 58 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 237
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 238 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 345
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 416 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 237
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 236 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 60
>gb|CX715540.1|CX715540 RTPQ1_34_G10.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_34_G10_A032 5', mRNA sequence
Length = 596
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 79 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 258
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 259 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 366
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 437 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 258
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 257 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 81
>gb|DR088564.1|DR088564 RTAL1_2_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_2_F09_A029 5', mRNA sequence
Length = 736
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 116 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 295
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 296 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 403
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 474 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 295
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 294 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 118
>gb|DR167170.1|DR167170 RTPHOS1_17_D09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_17_D09_A029 3', mRNA sequence
Length = 650
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / -3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 534 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 355
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 354 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 247
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / +2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 176 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 355
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 356 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 532
>gb|DR744690.1|DR744690 RTCU1_24_E12.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_E12_A029 3', mRNA sequence
Length = 550
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 15 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 194
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 195 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 302
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -1
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 373 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 194
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 193 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 17
>gb|DR745218.1|DR745218 RTCU1_27_H05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_27_H05_A029 5', mRNA sequence
Length = 677
Score = 204 bits (439), Expect = 7e-052
Identities = 82/96 (85%), Positives = 91/96 (94%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 29 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 208
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 209 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 316
Score = 179 bits (386), Expect = 1e-044
Identities = 80/119 (67%), Positives = 82/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 387 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 208
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 207 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 31
>gb|BF518220.1|BF518220 NXSI_036_E04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_036_E04 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 508
Score = 201 bits (433), Expect = 4e-051
Identities = 81/93 (87%), Positives = 89/93 (95%)
Frame = +2 / +1
Query: 68 QRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEY 247
QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRPAEY
Sbjct: 1 QRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRPAEY 180
Query: 248 KRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
KRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 181 KRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 279
Score = 164 bits (353), Expect = 5e-040
Identities = 73/109 (66%), Positives = 75/109 (68%)
Frame = -3 / -3
Query: 399 LVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSAGLRCGI 220
L F F TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSAGLR GI
Sbjct: 332 LDF*XXKXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGI 153
Query: 219 PWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VS 73
PWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS
Sbjct: 152 PWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVS 6
>gb|BE643823.1|BE643823 NXCI_047_F11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_047_F11 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 458
Score = 200 bits (432), Expect = 6e-051
Identities = 81/96 (84%), Positives = 90/96 (93%)
Frame = +2 / +3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 57 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 236
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YG VLSG+AVR+RIIRAF
Sbjct: 237 AEYKRSRLSRNRRTVNRAYGXVLSGSAVRDRIIRAF 344
Score = 169 bits (364), Expect = 1e-041
Identities = 77/119 (64%), Positives = 79/119 (66%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TIFCSSTK AR+I S TA PDRT P FTVL FL +LDLLYSA
Sbjct: 415 LXVCFSLDF*IFXXXLTIFCSSTKNARIIRSRTAEPDRTXP*ALFTVLLFLLSLDLLYSA 236
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 235 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 59
>gb|BE209319.1|BE209319 NXNV_166_C12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_166_C12 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 413
Score = 200 bits (431), Expect = 8e-051
Identities = 80/96 (83%), Positives = 90/96 (93%)
Frame = +2 / +2
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYAT+SNQTRV+KTPGG+L+YQ KKRASGPKCP TGK+I GIPHLRP
Sbjct: 8 EMAQRLTYRKRHSYATRSNQTRVLKTPGGRLIYQTAKKRASGPKCPFTGKRIHGIPHLRP 187
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 188 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 295
Score = 170 bits (365), Expect = 1e-041
Identities = 75/111 (67%), Positives = 77/111 (69%)
Frame = -3 / -3
Query: 393 FWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSAGLRCGIPW 214
F IF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSAGLR GIPW
Sbjct: 342 F*IFXXXLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSAGLRWGIPW 163
Query: 213 IFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
I PV GH GPLA F WY S PPGV T VW DLVA*L R R VS C I
Sbjct: 162 ILLPVKGHLGPLALFFAVWYISLPPGVFRTLVWLDLVA*LWRLRYVSLCAI 10
>gb|BE496610.1|BE496610 NXCI_021_G01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_021_G01 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 455
Score = 199 bits (430), Expect = 1e-050
Identities = 81/96 (84%), Positives = 89/96 (92%)
Frame = +2 / +3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 57 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 236
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR IIRAF
Sbjct: 237 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRXXIIRAF 344
Score = 165 bits (355), Expect = 3e-040
Identities = 74/119 (62%), Positives = 76/119 (63%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL IF T FCSSTK AR+ TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 415 LXVCFSLDXXIFXXXLTXFCSSTKNARIXXXRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 236
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 235 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 59
>gb|CF470550.1|CF470550 RTDS1_13_E11.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_E11_A015 3', mRNA sequence
Length = 681
Score = 199 bits (429), Expect = 2e-050
Identities = 81/96 (84%), Positives = 90/96 (93%)
Frame = +2 / +3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASG KCPVTGK+I GIPHLRP
Sbjct: 51 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGLKCPVTGKRIHGIPHLRP 230
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 231 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 338
Score = 177 bits (380), Expect = 9e-044
Identities = 79/119 (66%), Positives = 81/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 409 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 230
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH PLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 229 GLRWGIPWILLPVTGHLSPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 53
>gb|CF470616.1|CF470616 RTDS1_13_E11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_E11_A015 5', mRNA sequence
Length = 742
Score = 199 bits (429), Expect = 2e-050
Identities = 81/96 (84%), Positives = 90/96 (93%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASG KCPVTGK+I GIPHLRP
Sbjct: 94 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGLKCPVTGKRIHGIPHLRP 273
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 274 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 381
Score = 177 bits (380), Expect = 9e-044
Identities = 79/119 (66%), Positives = 81/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 452 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 273
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH PLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 272 GLRWGIPWILLPVTGHLSPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 96
>gb|DR744762.1|DR744762 RTCU1_24_E12.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_E12_A029 5', mRNA sequence
Length = 545
Score = 199 bits (428), Expect = 2e-050
Identities = 80/92 (86%), Positives = 88/92 (95%)
Frame = +2 / +3
Query: 71 RLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPAEYK 250
RLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRPAEYK
Sbjct: 3 RLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRPAEYK 182
Query: 251 RSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
RSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 183 RSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 278
Score = 174 bits (375), Expect = 4e-043
Identities = 78/115 (67%), Positives = 80/115 (69%)
Frame = -3 / -2
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 349 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 170
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VS 73
GLR GIPWI PVTGH GPLA F WY S PPGV T VW D VA*L R R VS
Sbjct: 169 GLRWGIPWILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVS 5
>gb|BG040040.1|BG040040 NXSI_105_H03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_105_H03 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 423
Score = 197 bits (425), Expect = 6e-050
Identities = 80/96 (83%), Positives = 88/96 (91%)
Frame = +2 / +3
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 93 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 272
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL +RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 273 AEYKRSRLXXXRRTVNRAYGGVLSGSAVRDRIIRAF 380
Score = 163 bits (350), Expect = 1e-039
Identities = 71/108 (65%), Positives = 73/108 (67%)
Frame = -3 / -3
Query: 384 FNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSAGLRCGIPWIFF 205
F TIFCS TK AR+I S TA PDRTPP FTVL L +LDLLYSAGLR GIPWI
Sbjct: 418 FXXXXTIFCSXTKNARIIRSRTAEPDRTPP*ALFTVLLXLXSLDLLYSAGLRWGIPWILL 239
Query: 204 PVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 238 PVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 95
>gb|BQ697224.1|BQ697224 NXPV_051_A06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_051_A06 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 431
Score = 197 bits (425), Expect = 6e-050
Identities = 80/96 (83%), Positives = 88/96 (91%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQTRV+KTPGG+L+YQ KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 16 EMAQRLTYRKRHSYATKSNQTRVLKTPGGRLIYQTAKKRASGPKCPVTGKRIHGIPHLRP 195
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL +RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 196 AEYKRSRLXXXRRTVNRAYGGVLSGSAVRDRIIRAF 303
Score = 171 bits (369), Expect = 3e-042
Identities = 75/111 (67%), Positives = 77/111 (69%)
Frame = -3 / -1
Query: 393 FWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSAGLRCGIPW 214
F IF F TIFCSSTK AR+I S TA PDRTPP FTVL L +LDLLYSAGLR GIPW
Sbjct: 350 F*IFKXFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLXLXSLDLLYSAGLRWGIPW 171
Query: 213 IFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
I PVTGH GPLA F WY S PPGV T VW D VA*L R R VS C I
Sbjct: 170 ILLPVTGHLGPLALFFAVWYISLPPGVFRTLVWLDFVA*LWRLRYVSLCAI 18
>gb|CV035055.1|CV035055 RTNACL1_13_G07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_G07_A029 3', mRNA sequence
Length = 688
Score = 197 bits (424), Expect = 8e-050
Identities = 80/96 (83%), Positives = 89/96 (92%)
Frame = +2 / +1
Query: 59 KMVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRP 238
+M QRLTYRKRHSYATKSNQT V+KTPGG+L+ Q KKRASGPKCPVTGK+I GIPHLRP
Sbjct: 76 EMAQRLTYRKRHSYATKSNQTTVLKTPGGRLISQTAKKRASGPKCPVTGKRIHGIPHLRP 255
Query: 239 AEYKRSRLARNQRTVNRPYGGVLSGTAVRERIIRAF 346
AEYKRSRL+RN+RTVNR YGGVLSG+AVR+RIIRAF
Sbjct: 256 AEYKRSRLSRNRRTVNRAYGGVLSGSAVRDRIIRAF 363
Score = 174 bits (375), Expect = 4e-043
Identities = 79/119 (66%), Positives = 81/119 (68%)
Frame = -3 / -3
Query: 417 LLEALSLVFWIFNTFFTIFCSSTKKARMILSLTAVPDRTPPYGRFTVLWFLANLDLLYSA 238
L SL F IF TF TIFCSSTK AR+I S TA PDRTPP FTVL FL +LDLLYSA
Sbjct: 434 LAVCFSLDF*IFKTFLTIFCSSTKNARIIRSRTAEPDRTPP*ALFTVLLFLLSLDLLYSA 255
Query: 237 GLRCGIPWIFFPVTGHFGPLARFLVYWYTSFPPGVLTTRVWFDLVA*LCRFR*VSRCTI 61
GLR GIPWI PVTGH GPLA F W S PPGV T VW D VA*L R R VS C I
Sbjct: 254 GLRWGIPWILLPVTGHLGPLALFFAVWDISLPPGVFRTVVWLDFVA*LWRLRYVSLCAI 78
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 339,717,885
Number of Sequences: 355925
Number of extensions: 4850986
Number of successful extensions: 50040
Number of sequences better than 1.0e-020: 129
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 8734658490
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)