TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192679.2.1
(1274 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO368099.1|CO368099 RTK1_38_D05.g1_A029 Roots minus pota... 153 2e-047
gb|DR691914.1|DR691914 EST1082001 Normalized pine embryo li... 155 4e-045
gb|DR684995.1|DR684995 EST1075072 Normalized pine embryo li... 157 1e-037
gb|DR689410.1|DR689410 EST1079496 Normalized pine embryo li... 157 1e-037
gb|DT632764.1|DT632764 EST1147695 Normalized pine embryo li... 157 1e-037
gb|DT635465.1|DT635465 EST1150396 Normalized pine embryo li... 157 1e-037
gb|CF401990.1|CF401990 RTWW1_16_G12.g1_A015 Well-watered lo... 154 1e-036
gb|DR111006.1|DR111006 RTS1_14_D07.g1_A029 Roots minus sulf... 153 2e-036
gb|DR682128.1|DR682128 EST1072203 Normalized pine embryo li... 153 2e-036
gb|DT630782.1|DT630782 EST1145713 Normalized pine embryo li... 152 4e-036
gb|DR689184.1|DR689184 EST1079270 Normalized pine embryo li... 151 8e-036
>gb|CO368099.1|CO368099 RTK1_38_D05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_38_D05_A029 5', mRNA sequence
Length = 851
Score = 153 bits (329), Expect(2) = 2e-047
Identities = 60/124 (48%), Positives = 87/124 (70%)
Frame = +2 / +3
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TDV+F LDDGTGRL+ RWVND +S E A
Sbjct: 237 DENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMAE 416
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+ NG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++ G+
Sbjct: 417 VHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQVGATQP 596
Query: 599 ISSS 610
S+S
Sbjct: 597 NSAS 608
Score = 57.0 bits (118), Expect(2) = 2e-047
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +2 / +3
Query: 707 DLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDY 841
DL+ +V + F EPANL EHGVHVD+V++R +KQI D+I +
Sbjct: 714 DLNGRVQSIFEEPANLAIEHGVHVDDVVRRLPGFTRKQIMDSIAF 848
>gb|DR691914.1|DR691914 EST1082001 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADF64 3' end, mRNA sequence
Length = 764
Score = 155 bits (333), Expect(2) = 4e-045
Identities = 61/124 (49%), Positives = 88/124 (70%)
Frame = +2 / +2
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TD +F LDDGTGRL+ RWVNDA +S E A
Sbjct: 146 DENSNFTIDGVDINNVTLVGMVFNKEERVTDASFYLDDGTGRLEAKRWVNDAMESAEMAE 325
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+QNG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++ G+
Sbjct: 326 VQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQGGATQP 505
Query: 599 ISSS 610
S+S
Sbjct: 506 NSAS 517
Score = 47.3 bits (97), Expect(2) = 4e-045
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +2 / +2
Query: 707 DLHTQVLNFFNEPANLESEHGVHVDEVLKR 796
DL+ +V + F EPANL EHGVHVD+V++R
Sbjct: 623 DLNGRVQSIFEEPANLAIEHGVHVDDVVRR 712
>gb|DR684995.1|DR684995 EST1075072 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAY91 3' end, mRNA sequence
Length = 813
Score = 157 bits (338), Expect = 1e-037
Identities = 62/124 (50%), Positives = 89/124 (71%)
Frame = +2 / +3
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TDV+F LDDGTGRL+ RWVNDA +S E A
Sbjct: 327 DENSNFTIDGVDINNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDAMESAEMAE 506
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+QNG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++ G+
Sbjct: 507 VQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQGGATQP 686
Query: 599 ISSS 610
S+S
Sbjct: 687 NSAS 698
>gb|DR689410.1|DR689410 EST1079496 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACI28 3' end, mRNA sequence
Length = 785
Score = 157 bits (338), Expect = 1e-037
Identities = 62/124 (50%), Positives = 89/124 (71%)
Frame = +2 / +1
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TDV+F LDDGTGRL+ RWVNDA +S E A
Sbjct: 298 DENSNFTIDGVDINNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDAMESAEMAE 477
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+QNG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++ G+
Sbjct: 478 VQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQGGATQP 657
Query: 599 ISSS 610
S+S
Sbjct: 658 NSAS 669
>gb|DT632764.1|DT632764 EST1147695 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFN50 3' end, mRNA sequence
Length = 859
Score = 157 bits (338), Expect = 1e-037
Identities = 62/124 (50%), Positives = 89/124 (71%)
Frame = +2 / +2
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TDV+F LDDGTGRL+ RWVNDA +S E A
Sbjct: 335 DENSNFTIDGVDINNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDAMESAEMAE 514
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+QNG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++ G+
Sbjct: 515 VQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQGGATQP 694
Query: 599 ISSS 610
S+S
Sbjct: 695 NSAS 706
>gb|DT635465.1|DT635465 EST1150396 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGH16 3' end, mRNA sequence
Length = 801
Score = 157 bits (338), Expect = 1e-037
Identities = 62/124 (50%), Positives = 89/124 (71%)
Frame = +2 / +3
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TDV+F LDDGTGRL+ RWVNDA +S E A
Sbjct: 306 DENSNFTIDGVDINNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDAMESAEMAE 485
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+QNG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++ G+
Sbjct: 486 VQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQGGATQP 665
Query: 599 ISSS 610
S+S
Sbjct: 666 NSAS 677
>gb|CF401990.1|CF401990 RTWW1_16_G12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_G12_A015 5', mRNA sequence
Length = 657
Score = 154 bits (331), Expect = 1e-036
Identities = 60/124 (48%), Positives = 87/124 (70%)
Frame = +2 / +3
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TDV+F LDDGTGRL+ RWVND +S E A
Sbjct: 180 DENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMAE 359
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+ NG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++ G+
Sbjct: 360 VHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLHNMKVQVGATQP 539
Query: 599 ISSS 610
S+S
Sbjct: 540 NSAS 551
>gb|DR111006.1|DR111006 RTS1_14_D07.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_14_D07_A029 5', mRNA sequence
Length = 738
Score = 153 bits (329), Expect = 2e-036
Identities = 60/124 (48%), Positives = 87/124 (70%)
Frame = +2 / +1
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TDV+F LDDGTGRL+ RWVND +S E A
Sbjct: 247 DENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMAE 426
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+ NG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++ G+
Sbjct: 427 VHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQVGATQP 606
Query: 599 ISSS 610
S+S
Sbjct: 607 NSAS 618
>gb|DR682128.1|DR682128 EST1072203 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA734 3' end, mRNA sequence
Length = 688
Score = 153 bits (329), Expect = 2e-036
Identities = 60/124 (48%), Positives = 87/124 (70%)
Frame = +2 / +3
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TDV+F LDDGTGRL+ RWVND +S E A
Sbjct: 186 DENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMAE 365
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPAR 598
+ NG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++ G+
Sbjct: 366 VHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQVGATQL 545
Query: 599 ISSS 610
S+S
Sbjct: 546 NSAS 557
>gb|DT630782.1|DT630782 EST1145713 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF021 3' end, mRNA sequence
Length = 552
Score = 152 bits (327), Expect = 4e-036
Identities = 58/117 (49%), Positives = 84/117 (71%)
Frame = +2 / +2
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TDV+F LDDGTGRL+ RWVND +S E A
Sbjct: 194 DENSNFTIDGVDVNNVTLVGMVFNKEERVTDVSFYLDDGTGRLEVKRWVNDTMESAEMAE 373
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGS 589
+ NG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++ G+
Sbjct: 374 VHNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQVGA 544
>gb|DR689184.1|DR689184 EST1079270 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF22 3' end, mRNA sequence
Length = 825
Score = 151 bits (325), Expect = 8e-036
Identities = 58/114 (50%), Positives = 83/114 (72%)
Frame = +2 / +3
Query: 239 DKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAA 418
D+ + F ++GV++ N+ LVGMV K ER TD +F LDDGTGRL+ RWVNDA +S E A
Sbjct: 285 DENSNFTIDGVDINNVTLVGMVFNKEERVTDASFYLDDGTGRLEVKRWVNDAMESAEMAE 464
Query: 419 IQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELK 580
+QNG Y+ V G L+ Q +K AFS+RP+TDFNEVT H ++C+ +H+ N++++
Sbjct: 465 VQNGAYVCVHGHLRSFQNKKLVNAFSVRPVTDFNEVTFHSLECIFVHLYNMKVQ 626
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 608,523,474
Number of Sequences: 355925
Number of extensions: 8153580
Number of successful extensions: 34927
Number of sequences better than 1.0e-020: 11
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 19686144150
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)