TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.22
(333 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pin... 84 3e-016
gb|BG318466.1|BG318466 NXPV_013_H10_F NXPV (Nsf Xylem Plani... 84 5e-016
gb|BQ695893.1|BQ695893 NXPV_033_H04_F NXPV (Nsf Xylem Plani... 84 5e-016
gb|BQ696465.1|BQ696465 NXPV_041_F02_F NXPV (Nsf Xylem Plani... 84 5e-016
gb|BQ697291.1|BQ697291 NXPV_055_C02_F NXPV (Nsf Xylem Plani... 84 5e-016
gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pin... 84 5e-016
gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch... 84 5e-016
gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciat... 83 9e-016
gb|CX646890.1|CX646890 COLD1_12_D12.b1_A029 Root cold Pinus... 82 1e-015
gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus... 82 1e-015
gb|DR048637.1|DR048637 RTBOR1_10_E10.b1_A029 Roots plus add... 81 2e-015
gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus add... 81 2e-015
gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus... 80 6e-015
gb|DR081789.1|DR081789 RTFEPL1_32_F12.b1_A029 Roots plus ad... 80 6e-015
gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response R... 80 6e-015
gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus pota... 79 1e-014
gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus pota... 79 1e-014
gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine r... 79 2e-014
gb|CF390846.1|CF390846 RTDR3_2_H05.b1_A022 Loblolly pine ro... 79 2e-014
gb|CF392313.1|CF392313 RTDR3_7_B01.b1_A022 Loblolly pine ro... 79 2e-014
gb|CF392633.1|CF392633 RTDR3_5_G10.b1_A022 Loblolly pine ro... 79 2e-014
gb|CF475301.1|CF475301 RTWW2_13_A12.b1_A021 Well-watered lo... 79 2e-014
gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus pota... 79 2e-014
gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus pota... 79 2e-014
gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus add... 79 2e-014
gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus add... 79 2e-014
gb|DR118221.1|DR118221 RTMG1_11_H09.g1_A029 Roots minus mag... 79 2e-014
gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side ... 77 6e-014
gb|CF399742.1|CF399742 RTDS3_25_D01.g1_A022 Drought-stresse... 77 6e-014
gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinu... 77 6e-014
gb|CF478151.1|CF478151 RTWW3_19_F12.b1_A022 Well-watered lo... 76 8e-014
gb|CF668848.1|CF668848 RTCNT1_39_C01.b1_A029 Root control P... 76 8e-014
gb|CF671905.1|CF671905 RTCNT1_60_C07.b1_A029 Root control P... 76 8e-014
gb|BX679902.1|BX679902 BX679902 RS Pinus pinaster cDNA clon... 76 8e-014
gb|CO162371.1|CO162371 FLD1_34_H05.g1_A029 Root flooded Pin... 76 8e-014
gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated wi... 76 8e-014
gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C fo... 76 8e-014
gb|DR080921.1|DR080921 RTFEPL1_26_D08.b1_A029 Roots plus ad... 76 8e-014
gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA... 76 8e-014
gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciat... 75 2e-013
gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2... 75 2e-013
gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch... 73 1e-012
gb|DR743165.1|DR743165 RTCU1_14_B08.b1_A029 Roots plus adde... 73 1e-012
gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism... 72 1e-012
gb|BF186322.1|BF186322 NXCI_136_C08_F NXCI (Nsf Xylem Compr... 71 3e-012
gb|CF478150.1|CF478150 RTWW3_19_D01.b1_A022 Well-watered lo... 71 3e-012
gb|DR013536.1|DR013536 HEAT1_19_H11.g1_A029 Root at 37 C fo... 70 7e-012
gb|DR744663.1|DR744663 RTCU1_24_B09.b1_A029 Roots plus adde... 70 7e-012
gb|DR080064.1|DR080064 RTFEPL1_20_A05.b1_A029 Roots plus ad... 70 7e-012
gb|DR088584.1|DR088584 RTAL1_3_A08.b1_A029 Roots plus added... 70 7e-012
gb|DR385366.1|DR385366 RTHG1_8_F01.b1_A029 Roots plus added... 70 7e-012
gb|BM133460.1|BM133460 NXLV_006_G10_F NXLV (Nsf Xylem Late ... 69 9e-012
gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered lob... 69 9e-012
gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus... 69 9e-012
gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C fo... 69 9e-012
gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch... 69 9e-012
gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch... 69 9e-012
gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch... 69 9e-012
gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch... 69 9e-012
gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calc... 69 9e-012
gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calc... 69 9e-012
gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus cal... 69 9e-012
gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus ad... 69 9e-012
gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response R... 69 9e-012
gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response R... 69 9e-012
gb|DR110861.1|DR110861 RTS1_13_B02.g1_A029 Roots minus sulf... 69 9e-012
gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulf... 69 9e-012
gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iro... 69 9e-012
gb|BG319401.1|BG319401 NXPV_027_E09_F NXPV (Nsf Xylem Plani... 68 3e-011
gb|CD021810.1|CD021810 NXNV_139_G12_F Nsf Xylem Normal wood... 67 4e-011
gb|CX650807.1|CX650807 COLD1_48_F06.b1_A029 Root cold Pinus... 67 4e-011
gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine r... 67 6e-011
gb|AW042637.1|AW042637 ST24C01 Pine TriplEx shoot tip libra... 58 4e-010
gb|DR054591.1|DR054591 RTCA1_18_G02.b1_A029 Roots minus cal... 62 1e-009
gb|CO158951.1|CO158951 FLD1_10_G08.b1_A029 Root flooded Pin... 59 1e-008
gb|CF473466.1|CF473466 RTWW2_3_H10.b2_A021 Well-watered lob... 56 9e-008
gb|CO171270.1|CO171270 NDL1_20_G08.b1_A029 Needles control ... 55 2e-007
gb|BG319045.1|BG319045 NXPV_023_A01_F NXPV (Nsf Xylem Plani... 50 6e-006
gb|BG319067.1|BG319067 NXPV_023_D06_F NXPV (Nsf Xylem Plani... 50 6e-006
gb|BQ698200.1|BQ698200 NXPV_067_F06_F NXPV (Nsf Xylem Plani... 50 6e-006
gb|CX716031.1|CX716031 RTPQ1_39_F05.g1_A032 Roots treated w... 50 6e-006
gb|DR096911.1|DR096911 STRR1_31_E10.b1_A033 Stem Response R... 50 6e-006
gb|DR096990.1|DR096990 STRR1_31_E10.g1_A033 Stem Response R... 50 6e-006
gb|DR102673.1|DR102673 STRR1_82_H08.g1_A033 Stem Response R... 50 6e-006
gb|BI203019.1|BI203019 NXPV_099_A06_F NXPV (Nsf Xylem Plani... 50 8e-006
gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clon... 50 8e-006
gb|DR685831.1|DR685831 EST1075908 Normalized pine embryo li... 49 1e-005
gb|AW497849.1|AW497849 PC02B05 Pine TriplEx pollen cone lib... 46 7e-005
gb|DR163619.1|DR163619 RTFE1_44_A05.b1_A029 Roots minus iro... 42 9e-005
gb|BE996793.1|BE996793 NXCI_101_B08_F NXCI (Nsf Xylem Compr... 45 2e-004
gb|CD023078.1|CD023078 NXPV_098_G09_F NXPV (Nsf Xylem Plani... 40 0.008
gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo li... 40 0.008
gb|CF473781.1|CF473781 RTWW2_4_A04.g1_A021 Well-watered lob... 25 0.010
gb|DR012002.1|DR012002 HEAT1_9_A02.g1_A029 Root at 37 C for... 33 0.97
gb|AW010487.1|AW010487 ST07D06 Pine TriplEx shoot tip libra... 32 1.3
gb|AW587772.1|AW587772 ST66F08 Pine TriplEx shoot tip libra... 31 2.5
gb|CF672862.1|CF672862 RTCNT1_74_A10.g1_A029 Root control P... 31 2.5
gb|AL750044.1|AL750044 AL750044 AS Pinus pinaster cDNA clon... 31 3.5
gb|DR025104.1|DR025104 STRS1_69_D05.g1_A034 Shoot tip pitch... 31 3.5
gb|AW043221.1|AW043221 ST30G04 Pine TriplEx shoot tip libra... 30 4.8
gb|DR055752.1|DR055752 RTCA1_25_E04.g1_A029 Roots minus cal... 30 4.8
emb|CR378169.1| Pinus pinaster SSR, clone PPC2C06 30 6.5
gb|CF670875.1|CF670875 RTCNT1_53_D11.b1_A029 Root control P... 29 9.0
gb|DR022579.1|DR022579 STRS1_52_B08.b1_A034 Shoot tip pitch... 29 9.0
gb|DR072294.1|DR072294 RTDK1_25_G06.b1_A029 Roots, dark Pin... 29 9.0
>gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_36_C02_A029 3', mRNA sequence
Length = 649
Score = 84.0 bits (177), Expect = 3e-016
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
G NV GYF WSLLDN+EW AG+T R+G+ +VD +N TRY K+S +W K F
Sbjct: 254 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKDSVQWFKCF 406
Score = 40.9 bits (83), Expect = 0.003
Identities = 23/48 (47%), Positives = 27/48 (56%)
Frame = -1 / -2
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
NH +S V+L L ST P V PA HS+LS+RD K*P T P
Sbjct: 396 NHWTESLGYLVRLCL*STK*SPNLEVYPAAHSQLSNRDHTK*PPTLHP 253
>gb|BG318466.1|BG318466 NXPV_013_H10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_013_H10 5' similar to Arabidopsis
thaliana sequence At1g26560 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 449
Score = 83.5 bits (176), Expect = 5e-016
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEFNT 163
G NV GYF WSLLDN+EW AG+T R+G+ +VD +N TRY K S +W K F T
Sbjct: 145 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 303
Score = 41.4 bits (84), Expect = 0.002
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = -1 / -1
Query: 168 FAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+ V NH ++ V+L L ST P V PA HS+LS+RD K*P T P
Sbjct: 308 YGVRKHLNHWTEALGYLVRLCL*STK*SPNLEVYPAAHSQLSNRDHTK*PPTLHP 144
>gb|BQ695893.1|BQ695893 NXPV_033_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_033_H04 5' similar to Arabidopsis
thaliana sequence At1g26560 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 449
Score = 83.5 bits (176), Expect = 5e-016
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEFNT 163
G NV GYF WSLLDN+EW AG+T R+G+ +VD +N TRY K S +W K F T
Sbjct: 145 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 303
Score = 41.4 bits (84), Expect = 0.002
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = -1 / -1
Query: 168 FAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+ V NH ++ V+L L ST P V PA HS+LS+RD K*P T P
Sbjct: 308 YGVRKHLNHWTEALGYLVRLCL*STK*SPNLEVYPAAHSQLSNRDHTK*PPTLHP 144
>gb|BQ696465.1|BQ696465 NXPV_041_F02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_041_F02 5' similar to Arabidopsis
thaliana sequence At1g26560 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 449
Score = 83.5 bits (176), Expect = 5e-016
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEFNT 163
G NV GYF WSLLDN+EW AG+T R+G+ +VD +N TRY K S +W K F T
Sbjct: 145 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 303
Score = 41.4 bits (84), Expect = 0.002
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = -1 / -1
Query: 168 FAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+ V NH ++ V+L L ST P V PA HS+LS+RD K*P T P
Sbjct: 308 YGVRKHLNHWTEALGYLVRLCL*STK*SPNLEVYPAAHSQLSNRDHTK*PPTLHP 144
>gb|BQ697291.1|BQ697291 NXPV_055_C02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_055_C02 5' similar to Arabidopsis
thaliana sequence At1g26560 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 449
Score = 83.5 bits (176), Expect = 5e-016
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEFNT 163
G NV GYF WSLLDN+EW AG+T R+G+ +VD +N TRY K S +W K F T
Sbjct: 145 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 303
Score = 41.4 bits (84), Expect = 0.002
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = -1 / -1
Query: 168 FAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+ V NH ++ V+L L ST P V PA HS+LS+RD K*P T P
Sbjct: 308 YGVRKHLNHWTEALGYLVRLCL*STK*SPNLEVYPAAHSQLSNRDHTK*PPTLHP 144
>gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 3', mRNA sequence
Length = 751
Score = 83.5 bits (176), Expect = 5e-016
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEFNT 163
G NV GYF WSLLDN+EW AG+T R+G+ +VD +N TRY K S +W K F T
Sbjct: 397 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 555
Score = 41.4 bits (84), Expect = 0.002
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = -1 / -3
Query: 168 FAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+ V NH ++ V+L L ST P V PA HS+LS+RD K*P T P
Sbjct: 560 YGVRKHLNHWTEALGYLVRLCL*STK*SPNLEVYPAAHSQLSNRDHTK*PPTLHP 396
>gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_B04_A034 3', mRNA sequence
Length = 868
Score = 83.5 bits (176), Expect = 5e-016
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEFNT 163
G NV GYF WSLLDN+EW AG+T R+G+ +VD +N TRY K S +W K F T
Sbjct: 515 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCFLT 673
Score = 41.4 bits (84), Expect = 0.002
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = -1 / -2
Query: 168 FAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+ V NH ++ V+L L ST P V PA HS+LS+RD K*P T P
Sbjct: 678 YGVRKHLNHWTEALGYLVRLCL*STK*SPNLEVYPAAHSQLSNRDHTK*PPTLHP 514
>gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP097C12, mRNA sequence
Length = 664
Score = 82.6 bits (174), Expect = 9e-016
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
G +V+GYF WSLLDN+EW +GFT R+G+ +VD N TRY K SA W K F
Sbjct: 344 GCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADWFKSF 496
Score = 41.4 bits (84), Expect = 0.002
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +1 / +1
Query: 16 ARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVVERVQHREK 171
ARLL +V+AGQL M +H +W RR Q H + + C++V+++ + K
Sbjct: 355 ARLLCVVTAGQLGMEFGIHSEIWVIFRRLQGQPHEISKSFCRLVQKLSAKIK 510
Score = 36.3 bits (73), Expect = 0.077
Identities = 22/48 (45%), Positives = 27/48 (56%)
Frame = -1 / -2
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N A++F V+L L ST P +V P HS+LSS D K*P T P
Sbjct: 486 NQSAEAFGYLVRLPL*STKYNPNLTVNPEFHSQLSSSDHTK*PRTSHP 343
>gb|CX646890.1|CX646890 COLD1_12_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D12_A029 3', mRNA sequence
Length = 777
Score = 82.2 bits (173), Expect = 1e-015
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEFNT 163
G V GYFAWSLLDN+EW AG+T R+G+ +VD +N TR+ K S KW K F T
Sbjct: 167 GCKVGGYFAWSLLDNWEWAAGYTSRFGLYFVDYRHNLTRHPKASVKWFKCFLT 325
Score = 44.6 bits (91), Expect = 3e-004
Identities = 25/62 (40%), Positives = 33/62 (53%)
Frame = -1 / -1
Query: 189 RIFLLGFFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTF 10
R+ + + V NHL ++ V+L L ST P V PA HS+LS+RD AK P T
Sbjct: 351 RLSISCIYGVRKHLNHLTEALGCLVRLCL*STK*SPNLDVYPAAHSQLSNRDHAKYPPTL 172
Query: 9 DP 4
P
Sbjct: 171 HP 166
Score = 33.1 bits (66), Expect = 0.71
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1 / +1
Query: 19 RLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVVERVQH 162
R+ +VS GQL M +H +W R Q H + CQ+V+ H
Sbjct: 181 RVFCVVSVGQLGMGSGVHIQIWALFR*LQTQSHQTSQSFCQMVQMFSH 324
>gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D12_A029 5', mRNA sequence
Length = 794
Score = 82.2 bits (173), Expect = 1e-015
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEFNT 163
G V GYFAWSLLDN+EW AG+T R+G+ +VD +N TR+ K S KW K F T
Sbjct: 232 GCKVGGYFAWSLLDNWEWAAGYTSRFGLYFVDYRHNLTRHPKASVKWFKCFLT 390
Score = 44.6 bits (91), Expect = 3e-004
Identities = 25/62 (40%), Positives = 33/62 (53%)
Frame = -1 / -1
Query: 189 RIFLLGFFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTF 10
R+ + + V NHL ++ V+L L ST P V PA HS+LS+RD AK P T
Sbjct: 416 RLSISCIYGVRKHLNHLTEALGCLVRLCL*STK*SPNLDVYPAAHSQLSNRDHAKYPPTL 237
Query: 9 DP 4
P
Sbjct: 236 HP 231
Score = 33.1 bits (66), Expect = 0.71
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1 / +3
Query: 19 RLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVVERVQH 162
R+ +VS GQL M +H +W R Q H + CQ+V+ H
Sbjct: 246 RVFCVVSVGQLGMGSGVHIQIWALFR*LQTQSHQTSQSFCQMVQMFSH 389
>gb|DR048637.1|DR048637 RTBOR1_10_E10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 3', mRNA sequence
Length = 837
Score = 81.3 bits (171), Expect = 2e-015
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
G++V+GYFAWSL+DNFEW G+T+R+G+V+VD ++ RY K SA W F
Sbjct: 113 GADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDYKDDLKRYPKSSAHWFTSF 265
Score = 44.6 bits (91), Expect = 3e-004
Identities = 27/48 (56%), Positives = 29/48 (60%)
Frame = -1 / -1
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD F R++ L ST T P R V P HSKLS RDQAK*P T P
Sbjct: 255 NQ*ADDFGYRLRSSL*STNTRPKRFV*P*PHSKLSIRDQAK*PRTSAP 112
>gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 5', mRNA sequence
Length = 667
Score = 81.3 bits (171), Expect = 2e-015
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
G++V+GYFAWSL+DNFEW G+T+R+G+V+VD ++ RY K SA W F
Sbjct: 243 GADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDYKDDLKRYPKSSAHWFTSF 395
Score = 44.6 bits (91), Expect = 3e-004
Identities = 27/48 (56%), Positives = 29/48 (60%)
Frame = -1 / -1
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD F R++ L ST T P R V P HSKLS RDQAK*P T P
Sbjct: 385 NQ*ADDFGYRLRSSL*STNTRPKRFV*P*PHSKLSIRDQAK*PRTSAP 242
>gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_F11_A029 3', mRNA sequence
Length = 805
Score = 79.9 bits (168), Expect = 6e-015
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
G++V+G+FAWSL+DNFEW G+T R+G +Y+D + RY K SA W K F
Sbjct: 291 GADVRGFFAWSLMDNFEWGFGYTSRFGFIYIDYKDGLKRYPKASAHWYKRF 443
Score = 31.8 bits (63), Expect = 1.8
Identities = 18/32 (56%), Positives = 18/32 (56%)
Frame = -1 / -1
Query: 99 ST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
S * P R V P HSKLS DQAK P T P
Sbjct: 385 SI*IKPNRDV*PNPHSKLSISDQAKNPRTSAP 290
>gb|DR081789.1|DR081789 RTFEPL1_32_F12.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_32_F12_A029 3', mRNA sequence
Length = 674
Score = 79.9 bits (168), Expect = 6e-015
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
G++V+G+FAWSL+DNFEW G+T R+G +Y+D + RY K SA W K F
Sbjct: 128 GADVRGFFAWSLMDNFEWGFGYTSRFGFIYIDYKDGLKRYPKASAHWYKRF 280
Score = 31.8 bits (63), Expect = 1.8
Identities = 18/32 (56%), Positives = 18/32 (56%)
Frame = -1 / -3
Query: 99 ST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
S * P R V P HSKLS DQAK P T P
Sbjct: 222 SI*IKPNRDV*PNPHSKLSISDQAKNPRTSAP 127
>gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_18_E04_A033 5', mRNA sequence
Length = 813
Score = 79.9 bits (168), Expect = 6e-015
Identities = 27/51 (52%), Positives = 37/51 (72%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
G++V+G+FAWSL+DNFEW G+T R+G +Y+D + RY K SA W K F
Sbjct: 556 GADVRGFFAWSLMDNFEWGFGYTSRFGFIYIDYKDGLKRYPKASAHWYKRF 708
Score = 31.8 bits (63), Expect = 1.8
Identities = 18/32 (56%), Positives = 18/32 (56%)
Frame = -1 / -2
Query: 99 ST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
S * P R V P HSKLS DQAK P T P
Sbjct: 650 SI*IKPNRDV*PNPHSKLSISDQAKNPRTSAP 555
>gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D02_A029 3', mRNA sequence
Length = 863
Score = 79.0 bits (166), Expect = 1e-014
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +2 / -3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
G++++GY WSLLDNFEW G+ R+G+ YVD +N RY K SA W +EF
Sbjct: 387 GADIRGYLVWSLLDNFEWAHGYNYRFGLYYVDYKDNLKRYPKASANWFREF 235
Score = 39.6 bits (80), Expect = 0.008
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = -1 / +2
Query: 171 FFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*P 19
F + NS N A++ +L L ST* P R + P HSKLS+ DQ +*P
Sbjct: 221 FSCLRNSLNQFAEALGYLFKLSL*ST*YKPNR*LYPCAHSKLSNSDQTR*P 373
Score = 29.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3 / +1
Query: 61 KPFKVVQQRPSEVALHI 11
+PFKV+QQRP+++ +I
Sbjct: 331 RPFKVIQQRPNQITSNI 381
>gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D02_A029 5', mRNA sequence
Length = 849
Score = 79.0 bits (166), Expect = 1e-014
Identities = 27/51 (52%), Positives = 36/51 (70%)
Frame = +2 / -3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
G++++GY WSLLDNFEW G+ R+G+ YVD +N RY K SA W +EF
Sbjct: 376 GADIRGYLVWSLLDNFEWAHGYNYRFGLYYVDYKDNLKRYPKASANWFREF 224
Score = 39.6 bits (80), Expect = 0.008
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = -1 / +3
Query: 171 FFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*P 19
F + NS N A++ +L L ST* P R + P HSKLS+ DQ +*P
Sbjct: 210 FSCLRNSLNQFAEALGYLFKLSL*ST*YKPNR*LYPCAHSKLSNSDQTR*P 362
Score = 29.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3 / +2
Query: 61 KPFKVVQQRPSEVALHI 11
+PFKV+QQRP+++ +I
Sbjct: 320 RPFKVIQQRPNQITSNI 370
>gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_D05_A021 5', mRNA
sequence
Length = 796
Score = 78.5 bits (165), Expect = 2e-014
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY WSLLDNFEW +G+ R+G+ Y+D N+N RY +ESA W +
Sbjct: 395 GADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFR 541
Score = 37.7 bits (76), Expect = 0.030
Identities = 24/56 (42%), Positives = 27/56 (48%)
Frame = -1 / -2
Query: 171 FFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
F+ + N ADS R +L L S * P R P HSKLS DQ *P T P
Sbjct: 561 FYDLRRFLNQWADSLAYRFKLSL*SI*YKPNR*SYPLAHSKLSKSDQTT*PRTSAP 394
Score = 35.0 bits (70), Expect = 0.20
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1 / +1
Query: 4 GIKCARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
G CARL LV+ GQL*+ + ++W L Q+ L A+ +G+C +V
Sbjct: 394 GSGCARLCGLVAFGQL*VGEWI*LSIWFILY*LQRQLKAICQGICPLV 537
>gb|CF390846.1|CF390846 RTDR3_2_H05.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_H05_A022 3', mRNA
sequence
Length = 631
Score = 78.5 bits (165), Expect = 2e-014
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY WSLLDNFEW +G+ R+G+ Y+D N+N RY +ESA W +
Sbjct: 127 GADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFR 273
Score = 37.7 bits (76), Expect = 0.030
Identities = 24/56 (42%), Positives = 27/56 (48%)
Frame = -1 / -3
Query: 171 FFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
F+ + N ADS R +L L S * P R P HSKLS DQ *P T P
Sbjct: 293 FYDLRRFLNQWADSLAYRFKLSL*SI*YKPNR*SYPLAHSKLSKSDQTT*PRTSAP 126
Score = 35.0 bits (70), Expect = 0.20
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1 / +3
Query: 4 GIKCARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
G CARL LV+ GQL*+ + ++W L Q+ L A+ +G+C +V
Sbjct: 126 GSGCARLCGLVAFGQL*VGEWI*LSIWFILY*LQRQLKAICQGICPLV 269
>gb|CF392313.1|CF392313 RTDR3_7_B01.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_7_B01_A022 3', mRNA
sequence
Length = 529
Score = 78.5 bits (165), Expect = 2e-014
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY WSLLDNFEW +G+ R+G+ Y+D N+N RY +ESA W +
Sbjct: 79 GADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFR 225
Score = 37.7 bits (76), Expect = 0.030
Identities = 24/56 (42%), Positives = 27/56 (48%)
Frame = -1 / -3
Query: 171 FFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
F+ + N ADS R +L L S * P R P HSKLS DQ *P T P
Sbjct: 245 FYDLRRFLNQWADSLAYRFKLSL*SI*YKPNR*SYPLAHSKLSKSDQTT*PRTSAP 78
Score = 35.0 bits (70), Expect = 0.20
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1 / +3
Query: 4 GIKCARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
G CARL LV+ GQL*+ + ++W L Q+ L A+ +G+C +V
Sbjct: 78 GSGCARLCGLVAFGQL*VGEWI*LSIWFILY*LQRQLKAICQGICPLV 221
>gb|CF392633.1|CF392633 RTDR3_5_G10.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_G10_A022 3', mRNA
sequence
Length = 615
Score = 78.5 bits (165), Expect = 2e-014
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY WSLLDNFEW +G+ R+G+ Y+D N+N RY +ESA W +
Sbjct: 124 GADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFR 270
Score = 37.7 bits (76), Expect = 0.030
Identities = 24/56 (42%), Positives = 27/56 (48%)
Frame = -1 / -2
Query: 171 FFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
F+ + N ADS R +L L S * P R P HSKLS DQ *P T P
Sbjct: 290 FYDLRRFLNQWADSLAYRFKLSL*SI*YKPNR*SYPLAHSKLSKSDQTT*PRTSAP 123
Score = 35.0 bits (70), Expect = 0.20
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1 / +3
Query: 4 GIKCARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
G CARL LV+ GQL*+ + ++W L Q+ L A+ +G+C +V
Sbjct: 123 GSGCARLCGLVAFGQL*VGEWI*LSIWFILY*LQRQLKAICQGICPLV 266
>gb|CF475301.1|CF475301 RTWW2_13_A12.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_13_A12_A021 3', mRNA sequence
Length = 446
Score = 78.5 bits (165), Expect = 2e-014
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
GS+V+GY WSL+D+FEW GFT R+G+ YVD NN+ RY + SA W K
Sbjct: 27 GSDVRGYLVWSLMDDFEWSFGFTYRFGLFYVDLNNHLKRYARASALWFK 173
Score = 47.8 bits (98), Expect = 3e-005
Identities = 24/48 (50%), Positives = 28/48 (58%)
Frame = -1 / -2
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD+ R + L RST* P R V P +HSK S DQ +*P T DP
Sbjct: 169 NQSADALAYRFKWLFRST*NKPKRYVNPKDHSKSSISDQTR*PRTSDP 26
Score = 32.2 bits (64), Expect = 1.3
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1 / +2
Query: 7 IKCARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
I C+RL LV+ G *MV ++ +LW L +Q A+ EG+ +V
Sbjct: 29 IGCSRLSGLVANG*F*MVFWIYISLWFVLCGSEQPFKAICEGIRALV 169
>gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 3', mRNA sequence
Length = 811
Score = 78.5 bits (165), Expect = 2e-014
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
GS+V+GY WSL+D+FEW GFT R+G+ YVD NN+ RY + SA W K
Sbjct: 578 GSDVRGYLVWSLMDDFEWSFGFTYRFGLYYVDLNNHLKRYARASALWFK 724
Score = 46.4 bits (95), Expect = 7e-005
Identities = 24/48 (50%), Positives = 28/48 (58%)
Frame = -1 / -2
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD+ R + L RST* P R V P +HSK S DQ +*P T DP
Sbjct: 720 NQSADALAYRFKWLFRST*YKPKRYVNPNDHSKSSISDQTR*PRTSDP 577
Score = 32.7 bits (65), Expect = 0.97
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1 / +1
Query: 7 IKCARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
I C+RL LV+ G *MV ++ +LW L +Q A+ EG+ +V
Sbjct: 580 IGCSRLSGLVANG*F*MVIWIYISLWFVLCGSEQPFKAICEGIRALV 720
>gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 5', mRNA sequence
Length = 805
Score = 78.5 bits (165), Expect = 2e-014
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
GS+V+GY WSL+D+FEW GFT R+G+ YVD NN+ RY + SA W K
Sbjct: 568 GSDVRGYLVWSLMDDFEWSFGFTYRFGLYYVDLNNHLKRYARASALWFK 714
Score = 46.4 bits (95), Expect = 7e-005
Identities = 24/48 (50%), Positives = 28/48 (58%)
Frame = -1 / -3
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD+ R + L RST* P R V P +HSK S DQ +*P T DP
Sbjct: 710 NQSADALAYRFKWLFRST*YKPKRYVNPNDHSKSSISDQTR*PRTSDP 567
Score = 32.7 bits (65), Expect = 0.97
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1 / +3
Query: 7 IKCARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
I C+RL LV+ G *MV ++ +LW L +Q A+ EG+ +V
Sbjct: 570 IGCSRLSGLVANG*F*MVIWIYISLWFVLCGSEQPFKAICEGIRALV 710
>gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 3', mRNA sequence
Length = 734
Score = 78.5 bits (165), Expect = 2e-014
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY WSLLDNFEW +G+ R+G+ Y+D N+N RY +ESA W +
Sbjct: 183 GADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFR 329
Score = 38.6 bits (78), Expect = 0.016
Identities = 24/56 (42%), Positives = 28/56 (50%)
Frame = -1 / -2
Query: 171 FFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
F+ ++ N ADS R +L L S * P R P HSKLS DQ *P T P
Sbjct: 349 FYDLIMFLNQWADSLAYRFKLSL*SI*YKPNR*SYPLAHSKLSKSDQTT*PRTSAP 182
Score = 35.0 bits (70), Expect = 0.20
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1 / +2
Query: 4 GIKCARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
G CARL LV+ GQL*+ + ++W L Q+ L A+ +G+C +V
Sbjct: 182 GSGCARLCGLVAFGQL*VGEWI*LSIWFILY*LQRQLKAICQGICPLV 325
>gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 5', mRNA sequence
Length = 770
Score = 78.5 bits (165), Expect = 2e-014
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY WSLLDNFEW +G+ R+G+ Y+D N+N RY +ESA W +
Sbjct: 189 GADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYNDNLKRYARESAHWFR 335
Score = 37.7 bits (76), Expect = 0.030
Identities = 24/56 (42%), Positives = 27/56 (48%)
Frame = -1 / -2
Query: 171 FFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
F+ + N ADS R +L L S * P R P HSKLS DQ *P T P
Sbjct: 355 FYDLRRFLNQWADSLAYRFKLSL*SI*YKPNR*SYPLAHSKLSKSDQTT*PRTSAP 188
Score = 35.0 bits (70), Expect = 0.20
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1 / +2
Query: 4 GIKCARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
G CARL LV+ GQL*+ + ++W L Q+ L A+ +G+C +V
Sbjct: 188 GSGCARLCGLVAFGQL*VGEWI*LSIWFILY*LQRQLKAICQGICPLV 331
>gb|DR118221.1|DR118221 RTMG1_11_H09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_11_H09_A029 5', mRNA sequence
Length = 493
Score = 78.5 bits (165), Expect = 2e-014
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +2 / -1
Query: 8 SNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
++V+GYFAWSL+DNFEW G+T+R+G+V+VD ++ RY K SA W F
Sbjct: 493 ADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDYKDDLKRYPKSSAHWFTSF 344
Score = 43.2 bits (88), Expect = 7e-004
Identities = 26/45 (57%), Positives = 28/45 (62%)
Frame = -1 / +3
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCT 13
N AD F R++ L ST T P R V P HSKLS RDQAK*P T
Sbjct: 354 NQ*ADDFGYRLRSSL*STNTRPKRFV*P*PHSKLSIRDQAK*PRT 488
>gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_101_H03 5' similar to Arabidopsis thaliana
sequence At5g54570 beta-glucosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 76.7 bits (161), Expect = 6e-014
Identities = 28/47 (59%), Positives = 35/47 (74%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKW 145
G +V+GYF WSLLDN+EW +GFT R+G+ +VD N TRY K SA W
Sbjct: 398 GCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYXXNLTRYPKASADW 538
Score = 35.0 bits (70), Expect = 0.20
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1 / +1
Query: 16 ARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
ARLL +V+AGQL M +H +W RR H + + C++V
Sbjct: 409 ARLLCVVTAGQLGMEFGIHSEVWVIFRRLXGQPHEISKSFCRLV 540
Score = 35.0 bits (70), Expect = 0.20
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -1 / -1
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N A++F V+L ST P +V P HS+LSS D K*P T P
Sbjct: 540 NQSAEAFGYLVRLXX*STKYNPNLTVNPEFHSQLSSSDHTK*PRTSHP 397
>gb|CF399742.1|CF399742 RTDS3_25_D01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_25_D01_A022 5', mRNA sequence
Length = 480
Score = 76.7 bits (161), Expect = 6e-014
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = +2 / -3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
G NV+GYF WSLLDNFEW G+T +G+ YVD + RY K SA+W F
Sbjct: 352 GVNVRGYFVWSLLDNFEWIYGYTSMFGLYYVDFRDKLQRYPKLSAQWYHNF 200
Score = 49.6 bits (102), Expect = 8e-006
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = -1 / +3
Query: 144 HLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
H ADSF *R L L+ST* P V P HSKLS+ D K P TF P
Sbjct: 213 HCADSFG*RCSLSLKST**RPNMEVYPYIHSKLSNNDHTKYPRTFTP 353
>gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_4_C03_A029 3', mRNA sequence
Length = 548
Score = 76.7 bits (161), Expect = 6e-014
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY W+LLDNFEWF G+ R+G+ YVD +N RY K SA W K
Sbjct: 293 GADVRGYIVWALLDNFEWFNGYNVRFGLNYVDYRHNLKRYAKASAYWFK 439
Score = 43.7 bits (89), Expect = 5e-004
Identities = 24/48 (50%), Positives = 28/48 (58%)
Frame = -1 / -3
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD+F R +L L ST* P R++ P NHSKLSS *P T P
Sbjct: 435 NQYADAFAYRFKLCL*ST*FKPNRTLYPLNHSKLSSNAHTI*PRTSAP 292
>gb|CF478151.1|CF478151 RTWW3_19_F12.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_F12_A022 3', mRNA sequence
Length = 340
Score = 76.2 bits (160), Expect = 8e-014
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
GS+V+GY WSL+D+FEW GFT R+G+ YVD N + RY + SA W K
Sbjct: 16 GSDVRGYLVWSLMDDFEWSLGFTYRFGLYYVDLNTHLKRYARASALWFK 162
Score = 45.5 bits (93), Expect = 1e-004
Identities = 24/56 (42%), Positives = 30/56 (53%)
Frame = -1 / -3
Query: 171 FFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
F+ N AD+ R + + RST* P R V P +HSK S DQ +*P T DP
Sbjct: 182 FYVRRMRLNQSADALAYRFKWVFRST*YKPKRYVNPNDHSKSSISDQTR*PRTSDP 15
Score = 30.9 bits (61), Expect = 3.5
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1 / +3
Query: 7 IKCARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQVV 147
I C+RL LV+ G *MV ++ +LW L + A+ EG+ +V
Sbjct: 18 IGCSRLSGLVANG*F*MVIGIYISLWFVLCGSEHPFKAICEGIRALV 158
>gb|CF668848.1|CF668848 RTCNT1_39_C01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_39_C01_A029 3', mRNA sequence
Length = 737
Score = 76.2 bits (160), Expect = 8e-014
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
GS+V+GYF WSLLDNFEW G+T R+G+ +VD ++ RY K SA+W ++F
Sbjct: 229 GSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQF 381
Score = 33.1 bits (66), Expect = 0.71
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1 / -1
Query: 105 LRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
++ST* P V P HSKLS RD K P T +P
Sbjct: 329 MKST**RPNLMVYPNAHSKLSRRDHTKYPRTSEP 228
>gb|CF671905.1|CF671905 RTCNT1_60_C07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_C07_A029 3', mRNA sequence
Length = 612
Score = 76.2 bits (160), Expect = 8e-014
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
GS+V+GYF WSLLDNFEW G+T R+G+ +VD ++ RY K SA+W ++F
Sbjct: 125 GSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQF 277
Score = 33.1 bits (66), Expect = 0.71
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1 / -1
Query: 105 LRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
++ST* P V P HSKLS RD K P T +P
Sbjct: 225 MKST**RPNLMVYPNAHSKLSRRDHTKYPRTSEP 124
>gb|BX679902.1|BX679902 BX679902 RS Pinus pinaster cDNA clone RS35H05, mRNA sequence
Length = 578
Score = 76.2 bits (160), Expect = 8e-014
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
GS+V+GYF WSLLDNFEW G+T R+G+ +VD ++ RY K SA+W ++F
Sbjct: 227 GSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQF 379
Score = 33.1 bits (66), Expect = 0.71
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1 / -3
Query: 105 LRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
++ST* P V P HSKLS RD K P T +P
Sbjct: 327 MKST**RPNLMVYPNAHSKLSRRDHTKYPRTSEP 226
>gb|CO162371.1|CO162371 FLD1_34_H05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H05_A029 5', mRNA sequence
Length = 738
Score = 76.2 bits (160), Expect = 8e-014
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2 / -3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
GS+V+GYF WSLLDNFEW G+T R+G+ +VD ++ RY K SA+W ++F
Sbjct: 487 GSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQF 335
Score = 33.1 bits (66), Expect = 0.71
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1 / +3
Query: 105 LRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
++ST* P V P HSKLS RD K P T +P
Sbjct: 387 MKST**RPNLMVYPNAHSKLSRRDHTKYPRTSEP 488
>gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_5_F12_A032 5', mRNA sequence
Length = 836
Score = 76.2 bits (160), Expect = 8e-014
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
GS+V+GYF WSLLDNFEW G+T R+G+ +VD ++ RY K SA+W ++F
Sbjct: 483 GSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQF 635
Score = 33.1 bits (66), Expect = 0.71
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1 / -2
Query: 105 LRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
++ST* P V P HSKLS RD K P T +P
Sbjct: 583 MKST**RPNLMVYPNAHSKLSRRDHTKYPRTSEP 482
>gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E12_A029 5', mRNA sequence
Length = 858
Score = 76.2 bits (160), Expect = 8e-014
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2 / -3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
GS+V+GYF WSLLDNFEW G+T R+G+ +VD ++ RY K SA+W ++F
Sbjct: 499 GSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQF 347
Score = 33.1 bits (66), Expect = 0.71
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1 / +3
Query: 105 LRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
++ST* P V P HSKLS RD K P T +P
Sbjct: 399 MKST**RPNLMVYPNAHSKLSRRDHTKYPRTSEP 500
>gb|DR080921.1|DR080921 RTFEPL1_26_D08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_D08_A029 3', mRNA sequence
Length = 707
Score = 76.2 bits (160), Expect = 8e-014
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
GS+V+GYF WSLLDNFEW G+T R+G+ +VD ++ RY K SA+W ++F
Sbjct: 326 GSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQF 478
Score = 33.1 bits (66), Expect = 0.71
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1 / -3
Query: 105 LRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
++ST* P V P HSKLS RD K P T +P
Sbjct: 426 MKST**RPNLMVYPNAHSKLSRRDHTKYPRTSEP 325
>gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA, complete cds
Length = 1909
Score = 76.2 bits (160), Expect = 8e-014
Identities = 28/51 (54%), Positives = 39/51 (76%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
GS+V+GYF WSLLDNFEW G+T R+G+ +VD ++ RY K SA+W ++F
Sbjct: 1524 GSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQF 1676
Score = 30.4 bits (60), Expect = 4.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1 / -1
Query: 105 LRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
++ST* P V P HSKLS D K P T +P
Sbjct: 1624 MKST**RPNLMVYPNAHSKLSRSDHTKYPRTSEP 1523
>gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP043D06, mRNA sequence
Length = 675
Score = 74.8 bits (157), Expect = 2e-013
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
GS+V+GYF WSLLDNFEW G+T R+G+ +VD + RY K SA+W ++F
Sbjct: 368 GSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISAQKRYPKLSAQWFRQF 520
Score = 33.1 bits (66), Expect = 0.71
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = -1 / -1
Query: 105 LRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
++ST* P V P HSKLS RD K P T +P
Sbjct: 468 MKST**RPNLMVYPNAHSKLSRRDHTKYPRTSEP 367
>gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 3', mRNA sequence
Length = 786
Score = 74.8 bits (157), Expect = 2e-013
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++++GY WSLLDNFEW G+T R+G+ YVD +N RY + SA W +
Sbjct: 350 GADIRGYLVWSLLDNFEWSFGYTYRFGLYYVDYKDNLKRYPRASANWFR 496
Score = 37.3 bits (75), Expect = 0.041
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = -1 / -1
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*P 19
N LA++ +L L ST* P R V P +HSKLS+ DQ +*P
Sbjct: 492 NQLAEALGYLFKLSL*ST*YKPNR*VYPNDHSKLSNSDQTR*P 364
Score = 29.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3 / -3
Query: 61 KPFKVVQQRPSEVALHI 11
+PFKV+QQRP+++ +I
Sbjct: 406 RPFKVIQQRPNQITSNI 356
>gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_C01_A034 3', mRNA sequence
Length = 903
Score = 72.5 bits (152), Expect = 1e-012
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY AWSLLD+ EW +G+ R+G+ YVD ++N RY + SA+W K
Sbjct: 541 GADVRGYVAWSLLDSLEWSSGYNYRFGLHYVDYHDNLKRYARASAQWFK 687
Score = 39.6 bits (80), Expect = 0.008
Identities = 22/48 (45%), Positives = 27/48 (56%)
Frame = -1 / -2
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
NH AD+ R +L ST* P R + P +HS+LS DQA P T P
Sbjct: 683 NHCADALAYRFKLSW*ST*CKPNR*LYPLDHSRLSRSDQATYPRTSAP 540
>gb|DR743165.1|DR743165 RTCU1_14_B08.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_14_B08_A029 3', mRNA sequence
Length = 761
Score = 72.5 bits (152), Expect = 1e-012
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
GS+V+GYF W+LLD+FE G+T +G+ YVD N+N RY K SA W K F
Sbjct: 455 GSDVRGYFIWTLLDDFEVLDGYTRSFGLHYVDFNDNLKRYPKLSAHWYKTF 607
Score = 33.6 bits (67), Expect = 0.52
Identities = 22/45 (48%), Positives = 25/45 (55%)
Frame = -1 / -3
Query: 138 ADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
ADS *R +L L+ST* P V P+ SK S R K P T DP
Sbjct: 588 ADSLG*RFKLSLKST**RPKLLV*PSKTSKSSRRVHIKYPRTSDP 454
>gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_C06_A032 3', mRNA sequence
Length = 870
Score = 72.1 bits (151), Expect = 1e-012
Identities = 24/49 (48%), Positives = 36/49 (73%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY AWSL+D+FEW +G+ R+G+ +VD +N RY + SA W K
Sbjct: 432 GADVRGYIAWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFK 578
Score = 39.6 bits (80), Expect = 0.008
Identities = 24/48 (50%), Positives = 28/48 (58%)
Frame = -1 / -3
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD R +L L ST* P R + P +HSKLS +DQA *P T P
Sbjct: 574 NQCADDLGYRFKLSL*ST*YKPNR*L*PLDHSKLSIKDQAI*PRTSAP 431
>gb|BF186322.1|BF186322 NXCI_136_C08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_136_C08 5' similar to Arabidopsis
thaliana sequence At2g44450 putative beta-glucosidase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 248
Score = 70.7 bits (148), Expect = 3e-012
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +2 / +3
Query: 23 YFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
+FAWSL+DNFEW G+T R+G +Y+D + RY K SA W K F
Sbjct: 3 FFAWSLMDNFEWGFGYTSRFGFIYIDYKDGLKRYPKASAHWYKXF 137
>gb|CF478150.1|CF478150 RTWW3_19_D01.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_D01_A022 3', mRNA sequence
Length = 473
Score = 70.7 bits (148), Expect = 3e-012
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKE 154
G++V+GY WSL+D+FEW +G+ R+G+ +VD +N RY + SA W K+
Sbjct: 97 GADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFKQ 246
Score = 37.3 bits (75), Expect = 0.041
Identities = 23/48 (47%), Positives = 27/48 (56%)
Frame = -1 / -1
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD R +L L ST* P R + P +HSKLS +DQ *P T P
Sbjct: 239 NQCADDLGYRFKLSL*ST*YKPNR*L*PLDHSKLSIKDQII*PRTSAP 96
>gb|DR013536.1|DR013536 HEAT1_19_H11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_19_H11_A029 5', mRNA sequence
Length = 729
Score = 69.8 bits (146), Expect = 7e-012
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +2 / -2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY WSL+D+FEW +G+ R+G+ +VD +N RY + SA W K
Sbjct: 389 GADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFK 243
Score = 37.3 bits (75), Expect = 0.041
Identities = 23/48 (47%), Positives = 27/48 (56%)
Frame = -1 / +1
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD R +L L ST* P R + P +HSKLS +DQ *P T P
Sbjct: 247 NQCADDLGYRFKLSL*ST*YKPNR*L*PLDHSKLSIKDQII*PRTSAP 390
>gb|DR744663.1|DR744663 RTCU1_24_B09.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B09_A029 3', mRNA sequence
Length = 727
Score = 69.8 bits (146), Expect = 7e-012
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY WSL+D+FEW +G+ R+G+ +VD +N RY + SA W K
Sbjct: 346 GADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFK 492
Score = 37.3 bits (75), Expect = 0.041
Identities = 23/48 (47%), Positives = 27/48 (56%)
Frame = -1 / -3
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD R +L L ST* P R + P +HSKLS +DQ *P T P
Sbjct: 488 NQCADDLGYRFKLSL*ST*YKPNR*L*PLDHSKLSIKDQII*PRTSAP 345
>gb|DR080064.1|DR080064 RTFEPL1_20_A05.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_20_A05_A029 3', mRNA sequence
Length = 295
Score = 69.8 bits (146), Expect = 7e-012
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY AWSLLD+ EW G+ R+G+ YVD ++N RY + SA W K
Sbjct: 12 GADVRGYVAWSLLDSLEWSNGYNYRFGLHYVDYHDNLKRYPRASAHWFK 158
Score = 37.7 bits (76), Expect = 0.030
Identities = 25/67 (37%), Positives = 35/67 (52%)
Frame = -1 / -1
Query: 204 F*AGVRIFLLGFFAVLNSFNHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK 25
F* + +F +++ N AD+ R +L ST* P R + P +HS+LS DQA
Sbjct: 211 F*KSINVFGSLNYSLRMVLNQ*ADALGYRFKLSW*ST*CKPNR*LYPFDHSRLSKSDQAT 32
Query: 24 *PCTFDP 4
*P T P
Sbjct: 31 *PRTSAP 11
>gb|DR088584.1|DR088584 RTAL1_3_A08.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_3_A08_A029 3', mRNA sequence
Length = 512
Score = 69.8 bits (146), Expect = 7e-012
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY WSL+D+FEW +G+ R+G+ +VD +N RY + SA W K
Sbjct: 126 GADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFK 272
Score = 37.3 bits (75), Expect = 0.041
Identities = 23/48 (47%), Positives = 27/48 (56%)
Frame = -1 / -2
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD R +L L ST* P R + P +HSKLS +DQ *P T P
Sbjct: 268 NQCADDLGYRFKLSL*ST*YKPNR*L*PLDHSKLSIKDQII*PRTSAP 125
>gb|DR385366.1|DR385366 RTHG1_8_F01.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F01_A029 3', mRNA sequence
Length = 558
Score = 69.8 bits (146), Expect = 7e-012
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+GY WSL+D+FEW +G+ R+G+ +VD +N RY + SA W K
Sbjct: 224 GADVRGYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFK 370
Score = 37.3 bits (75), Expect = 0.041
Identities = 23/48 (47%), Positives = 27/48 (56%)
Frame = -1 / -1
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
N AD R +L L ST* P R + P +HSKLS +DQ *P T P
Sbjct: 366 NQCADDLGYRFKLSL*ST*YKPNR*L*PLDHSKLSIKDQII*PRTSAP 223
>gb|BM133460.1|BM133460 NXLV_006_G10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_006_G10 5' similar to Arabidopsis thaliana
sequence At3g18080 beta-glucosidase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 214
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 81 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 176
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -1
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 184 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 80
>gb|CF477622.1|CF477622 RTWW3_9_B03.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_B03_A022 3', mRNA sequence
Length = 667
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 382 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 477
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -3
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 485 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 381
>gb|CX652294.1|CX652294 COLD1_58_E05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_E05_A029 3', mRNA sequence
Length = 502
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 219 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 314
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -1
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 322 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 218
>gb|DR013586.1|DR013586 HEAT1_20_F02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_F02_A029 3', mRNA sequence
Length = 740
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 316 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 411
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -1
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 419 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 315
>gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 3', mRNA sequence
Length = 865
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / -1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 280 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 185
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / +3
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 177 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 281
>gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 3', mRNA sequence
Length = 794
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 509 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 604
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -3
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 612 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 508
>gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 5', mRNA sequence
Length = 756
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / -1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 252 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 157
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / +2
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 149 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 253
>gb|DR024579.1|DR024579 STRS1_66_A03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_A03_A034 3', mRNA sequence
Length = 605
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 314 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 409
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -3
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 417 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 313
>gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 3', mRNA sequence
Length = 865
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 580 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 675
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -3
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 683 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 579
>gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 5', mRNA sequence
Length = 932
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 721 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 816
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -1
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 824 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 720
>gb|DR055729.1|DR055729 RTCA1_25_C02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_C02_A029 5', mRNA sequence
Length = 687
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / -3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 253 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 158
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / +3
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 150 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 254
>gb|DR081506.1|DR081506 RTFEPL1_30_D11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_30_D11_A029 3', mRNA sequence
Length = 761
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 356 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 451
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -3
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 459 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 355
>gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_E06_A033 5', mRNA sequence
Length = 788
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / -1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 269 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 174
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / +1
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 166 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 270
>gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 5', mRNA sequence
Length = 864
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / -1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 228 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 133
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / +2
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 125 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 229
>gb|DR110861.1|DR110861 RTS1_13_B02.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_13_B02_A029 5', mRNA sequence
Length = 490
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 142 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 237
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -3
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 245 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 141
>gb|DR111231.1|DR111231 RTS1_16_F03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_F03_A029 3', mRNA sequence
Length = 628
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 204 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 299
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -1
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 307 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 203
>gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_D09_A029 3', mRNA sequence
Length = 868
Score = 69.3 bits (145), Expect = 9e-012
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+NV GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 591 GANVVGYFAWSLLDNFEWKSGYTSRFGVVYVD 686
Score = 42.8 bits (87), Expect = 9e-004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -1
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
+++ST*T P V P HSKLSS+D AK P TF P
Sbjct: 694 VVKST*TTPNLEVYPDFHSKLSSKDHAKYPTTFAP 590
>gb|BG319401.1|BG319401 NXPV_027_E09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_027_E09 5' similar to Arabidopsis
thaliana sequence At1g26560 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 286
Score = 67.5 bits (141), Expect = 3e-011
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKW 145
G NV GYF WSLLDN+E AG+T +G+ +VD + TRY K S +W
Sbjct: 145 GCNVGGYFVWSLLDNWEXAAGYTSXFGLXFVDXKHXXTRYPKASVQW 285
>gb|CD021810.1|CD021810 NXNV_139_G12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_139_G12 5' similar to Arabidopsis thaliana
sequence At5g54570 beta-glucosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 177
Score = 67.0 bits (140), Expect = 4e-011
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = +2 / -2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESA 139
G +V+GYF WSLLDN+EW +GFT R+G+ +VD N TR SA
Sbjct: 140 GCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRXXXASA 6
Score = 35.0 bits (70), Expect = 0.20
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1 / -1
Query: 16 ARLLRLVSAGQL*MVCRLHRTLWHCLRRPQQ*LHALHEGVCQV 144
ARLL +V+AGQL M +H +W RR Q H + C++
Sbjct: 129 ARLLCVVTAGQLGMEFGIHSEIWVIFRRLQGQPHEIXXXFCRL 1
Score = 32.7 bits (65), Expect = 0.97
Identities = 19/38 (50%), Positives = 22/38 (57%)
Frame = -1 / +1
Query: 117 VQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
V+L L ST P +V P HS+LSS D K*P T P
Sbjct: 28 VRLPL*STKYNPNLTVNPEFHSQLSSSDHTK*PRTSHP 141
>gb|CX650807.1|CX650807 COLD1_48_F06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_F06_A029 3', mRNA sequence
Length = 594
Score = 67.0 bits (140), Expect = 4e-011
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLK 151
G++V+ Y WSL+D+FEW +G+ R+G+ +VD +N RY + SA W K
Sbjct: 218 GADVRSYIIWSLMDSFEWSSGYNYRFGLYHVDYKDNLKRYPRSSAHWFK 364
Score = 33.1 bits (66), Expect = 0.71
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -1 / -1
Query: 147 NHLADSFM*RVQLLLRST*TMP*RSVKPANHSKLSSRDQ 31
N AD R +L L ST* P R + P +HSKLS +DQ
Sbjct: 360 NQCADDLGYRFKLSL*ST*YKPNR*L*PLDHSKLSIKDQ 244
>gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_E07_A021 3', mRNA
sequence
Length = 587
Score = 66.6 bits (139), Expect = 6e-011
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKE 154
GS+++G++AWSL+DNFEW G+ +G Y+D + RY K SA W K+
Sbjct: 350 GSDIRGFYAWSLMDNFEWSLGYEC*FGFHYIDYKDGLKRYPKASAHWYKK 499
>gb|AW042637.1|AW042637 ST24C01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST24C01, mRNA sequence
Length = 567
Score = 57.9 bits (120), Expect(2) = 4e-010
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYV 97
GS+V+GYF WSLLDNFEW G+T R+G+ +V
Sbjct: 357 GSDVRGYFVWSLLDNFEWAFGYTIRFGLYHV 449
Score = 23.5 bits (45), Expect(2) = 4e-010
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2 / +1
Query: 119 RYMKESAKWLKEF 157
RY K SA+W K+F
Sbjct: 472 RYPKLSAQWFKQF 510
>gb|DR054591.1|DR054591 RTCA1_18_G02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G02_A029 3', mRNA sequence
Length = 356
Score = 62.5 bits (130), Expect = 1e-009
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +2 / +1
Query: 20 GYFAWSLLDNFEWFAGFTERYGIVYVD 100
GYFAWSLLDNFEW +G+T R+G+VYVD
Sbjct: 1 GYFAWSLLDNFEWKSGYTSRFGVVYVD 81
Score = 34.5 bits (69), Expect = 0.27
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -1 / -1
Query: 108 LLRST*TMP*RSVKPANHSKLSSRDQAK 25
+++ST*T P V P HSKLSS+D AK
Sbjct: 89 VVKST*TTPNLEVYPDFHSKLSSKDHAK 6
>gb|CO158951.1|CO158951 FLD1_10_G08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_G08_A029 3', mRNA sequence
Length = 716
Score = 59.3 bits (123), Expect = 1e-008
Identities = 18/32 (56%), Positives = 28/32 (87%)
Frame = +2 / -1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
G+N++GYF WS LDNFEW G+++R+G+++VD
Sbjct: 263 GANLRGYFYWSFLDNFEWAFGYSKRFGLIHVD 168
Score = 30.9 bits (61), Expect = 3.5
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = -1 / +1
Query: 99 ST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
ST* P R P HSKLS +DQ K P F P
Sbjct: 169 ST*ISPKRLEYPNAHSKLSRKDQ*KYPRRFAP 264
>gb|CF473466.1|CF473466 RTWW2_3_H10.b2_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_H10_A021 3', mRNA sequence
Length = 683
Score = 56.1 bits (116), Expect = 9e-008
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2 / +2
Query: 41 LDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
+DNFEW G+T+R+G+V+VD ++ RY K SA W F
Sbjct: 2 IDNFEWGQGYTKRFGLVFVDYKDDLKRYPKSSAHWFTSF 118
>gb|CO171270.1|CO171270 NDL1_20_G08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_20_G08_A029 3', mRNA sequence
Length = 650
Score = 55.1 bits (114), Expect = 2e-007
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVD 100
GSN + YF WSL+D+FE+ G+T RYG+ YVD
Sbjct: 268 GSNARAYFVWSLVDSFEFLYGYTIRYGLYYVD 363
Score = 32.7 bits (65), Expect = 0.97
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = -1 / -1
Query: 111 LLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
L L+ST* P*R V P +SKLS++ K FDP
Sbjct: 374 LCLKST*YSP*RIV*PYKNSKLSTKLHTKYARAFDP 267
>gb|BG319045.1|BG319045 NXPV_023_A01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_023_A01 5' similar to Arabidopsis
thaliana sequence At3g06510 beta glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 525
Score = 50.1 bits (103), Expect = 6e-006
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKES 136
G V GY W+ DN+EW G+ ++G+V VDR NN R + S
Sbjct: 113 GVQVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLARIPRPS 244
Score = 29.9 bits (59), Expect = 6.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1 / -1
Query: 120 RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
R +L RST T P P+ HS+LS Q +*P T+ P
Sbjct: 228 RARLFARSTATNPNFGP*PSAHSQLSDVVQNR*PRTWTP 112
>gb|BG319067.1|BG319067 NXPV_023_D06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_023_D06 5' similar to Arabidopsis
thaliana sequence At3g06510 beta glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 382
Score = 50.1 bits (103), Expect = 6e-006
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKES 136
G V GY W+ DN+EW G+ ++G+V VDR NN R + S
Sbjct: 113 GVQVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLARIPRPS 244
Score = 29.9 bits (59), Expect = 6.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1 / -2
Query: 120 RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
R +L RST T P P+ HS+LS Q +*P T+ P
Sbjct: 228 RARLFARSTATNPNFGP*PSAHSQLSDVVQNR*PRTWTP 112
>gb|BQ698200.1|BQ698200 NXPV_067_F06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_067_F06 5' similar to Arabidopsis
thaliana sequence At3g06510 beta glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 468
Score = 50.1 bits (103), Expect = 6e-006
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKES 136
G V GY W+ DN+EW G+ ++G+V VDR NN R + S
Sbjct: 113 GVQVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLARIPRPS 244
Score = 29.9 bits (59), Expect = 6.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1 / -1
Query: 120 RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
R +L RST T P P+ HS+LS Q +*P T+ P
Sbjct: 228 RARLFARSTATNPNFGP*PSAHSQLSDVVQNR*PRTWTP 112
>gb|CX716031.1|CX716031 RTPQ1_39_F05.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_39_F05_A032 5', mRNA sequence
Length = 616
Score = 50.1 bits (103), Expect = 6e-006
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKES 136
G V GY W+ DN+EW G+ ++G+V VDR NN R + S
Sbjct: 266 GVQVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLARIPRPS 397
Score = 29.9 bits (59), Expect = 6.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1 / -2
Query: 120 RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
R +L RST T P P+ HS+LS Q +*P T+ P
Sbjct: 381 RARLFARSTATNPNFGP*PSAHSQLSDVVQNR*PRTWTP 265
>gb|DR096911.1|DR096911 STRR1_31_E10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E10_A033 3', mRNA sequence
Length = 858
Score = 50.1 bits (103), Expect = 6e-006
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2 / -2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKES 136
G V GY W+ DN+EW G+ ++G+V VDR NN R + S
Sbjct: 389 GVQVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLARIPRPS 258
Score = 29.9 bits (59), Expect = 6.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1 / +1
Query: 120 RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
R +L RST T P P+ HS+LS Q +*P T+ P
Sbjct: 274 RARLFARSTATNPNFGP*PSAHSQLSDVVQNR*PRTWTP 390
>gb|DR096990.1|DR096990 STRR1_31_E10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E10_A033 5', mRNA sequence
Length = 751
Score = 50.1 bits (103), Expect = 6e-006
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2 / -2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKES 136
G V GY W+ DN+EW G+ ++G+V VDR NN R + S
Sbjct: 396 GVQVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLARIPRPS 265
Score = 29.9 bits (59), Expect = 6.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1 / +2
Query: 120 RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
R +L RST T P P+ HS+LS Q +*P T+ P
Sbjct: 281 RARLFARSTATNPNFGP*PSAHSQLSDVVQNR*PRTWTP 397
>gb|DR102673.1|DR102673 STRR1_82_H08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_82_H08_A033 5', mRNA sequence
Length = 662
Score = 50.1 bits (103), Expect = 6e-006
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKES 136
G V GY W+ DN+EW G+ ++G+V VDR NN R + S
Sbjct: 114 GVQVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLARIPRPS 245
Score = 29.9 bits (59), Expect = 6.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1 / -2
Query: 120 RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
R +L RST T P P+ HS+LS Q +*P T+ P
Sbjct: 229 RARLFARSTATNPNFGP*PSAHSQLSDVVQNR*PRTWTP 113
>gb|BI203019.1|BI203019 NXPV_099_A06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_099_A06 5' similar to Arabidopsis
thaliana sequence At3g06510 beta glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 406
Score = 49.6 bits (102), Expect = 8e-006
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2 / +2
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKES 136
G V GY W+ DN+EW G+ ++G+V VDR NN R + S
Sbjct: 113 GVQVLGYLFWTTSDNWEWADGYGPKFGLVPVDRANNLARIPRPS 244
Score = 29.9 bits (59), Expect = 6.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1 / -2
Query: 120 RVQLLLRST*TMP*RSVKPANHSKLSSRDQAK*PCTFDP 4
R +L RST T P P+ HS+LS Q +*P T+ P
Sbjct: 228 RARLFARSTGTNPNFGP*PSAHSQLSDVVQNR*PRTWTP 112
>gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clone RS67H05, mRNA sequence
Length = 585
Score = 49.6 bits (102), Expect = 8e-006
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEWFAGFTERYGIVYV 97
G++V+GY WSL+D+FEW +G+ R+G+ +V
Sbjct: 493 GADVRGYIIWSLMDSFEWSSGYNYRFGLYHV 585
>gb|DR685831.1|DR685831 EST1075908 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB853 3' end, mRNA sequence
Length = 526
Score = 48.7 bits (100), Expect = 1e-005
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +2 / +3
Query: 2 LGSNVQGYFAWSLLDNFEWFAGFTER 79
+GS+V+GYF WSLLD FEW G+T R
Sbjct: 447 MGSDVRGYFVWSLLDKFEWAFGYTIR 524
>gb|AW497849.1|AW497849 PC02B05 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC02B05, mRNA sequence
Length = 542
Score = 46.4 bits (95), Expect = 7e-005
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2 / +3
Query: 62 AGFTERYGIVYVDRNNNCTRYMKESAKWLKEF 157
+GFT R+G+ +VD N TRY K SA W K F
Sbjct: 6 SGFTVRFGLYFVDYKGNLTRYPKASADWFKSF 101
>gb|DR163619.1|DR163619 RTFE1_44_A05.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_44_A05_A029 3', mRNA sequence
Length = 706
Score = 41.8 bits (85), Expect(2) = 9e-005
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2 / +2
Query: 38 LLDNFEWFAGFTERYGIVYVD 100
LLDNFEW G+T R+G+ YVD
Sbjct: 227 LLDNFEWADGYTTRFGVTYVD 289
Score = 21.7 bits (41), Expect(2) = 9e-005
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWS 37
G +++ YFAWS
Sbjct: 135 GVDIRSYFAWS 167
>gb|BE996793.1|BE996793 NXCI_101_B08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_101_B08 5' similar to Arabidopsis
thaliana sequence At2g44480 beta-glucosidase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 391
Score = 45.1 bits (92), Expect = 2e-004
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2 / +1
Query: 5 GSNVQGYFAWSLLDNFEW 58
GS+V+GYF WSLLDNFEW
Sbjct: 334 GSDVRGYFVWSLLDNFEW 387
>gb|CD023078.1|CD023078 NXPV_098_G09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_098_G09 5' similar to Arabidopsis
thaliana sequence At5g36890 beta-glucosidase -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 195
Score = 39.6 bits (80), Expect = 0.008
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFE 55
G++V+GYFAWSL+DNFE
Sbjct: 138 GADVRGYFAWSLIDNFE 188
>gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACW86 3' end, mRNA sequence
Length = 754
Score = 39.6 bits (80), Expect = 0.008
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +2 / +3
Query: 5 GSNVQGYFAWSLLDNFE 55
G++V+GYFAWSL+DNFE
Sbjct: 702 GADVRGYFAWSLIDNFE 752
Score = 30.9 bits (61), Expect = 3.5
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / -1
Query: 57 HSKLSSRDQAK*PCTFDP 4
HSKLS RDQAK*P T P
Sbjct: 754 HSKLSIRDQAK*PRTSAP 701
>gb|CF473781.1|CF473781 RTWW2_4_A04.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_4_A04_A021 5', mRNA sequence
Length = 682
Score = 24.9 bits (48), Expect(3) = 0.010
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2 / -3
Query: 38 LLDNFEWF 61
LLDNFEWF
Sbjct: 350 LLDNFEWF 327
Score = 24.4 bits (47), Expect(3) = 0.010
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2 / -3
Query: 65 GFTERYGIVYVD 100
G+T R+G+ YVD
Sbjct: 260 GYTTRFGVTYVD 225
Score = 22.1 bits (42), Expect(3) = 0.010
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2 / -1
Query: 5 GSNVQGYFAWS 37
G +V+ YFAWS
Sbjct: 442 GVDVRSYFAWS 410
>gb|DR012002.1|DR012002 HEAT1_9_A02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_9_A02_A029 5', mRNA sequence
Length = 664
Score = 32.7 bits (65), Expect = 0.97
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = +3 / +1
Query: 45 TTLNGLPASPNVMALXXXXXXXXXXXXXXXLPSG*KSSTPRKSPARRFLRQLKNR 209
TT G P SP + LPS SS R+SP R LR L +R
Sbjct: 37 TTACGRPRSPETSLVSRSRPLPSRSESITRLPSSRPSSLSRRSPPSRPLRVLSSR 201
>gb|AW010487.1|AW010487 ST07D06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST07D06, mRNA sequence
Length = 811
Score = 32.2 bits (64), Expect = 1.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2 / +2
Query: 20 GYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKESAKWL 148
GY LL FEW + + R G+ YV + K SA W+
Sbjct: 527 GYLHGPLLGKFEWESRYXPRVGVGYVGFYXXESDIQKMSAXWV 655
>gb|AW587772.1|AW587772 ST66F08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST66F08, mRNA sequence
Length = 466
Score = 31.3 bits (62), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / -1
Query: 61 CRLHRTLWHCLRRPQ 105
C +HR WHC RPQ
Sbjct: 379 CHIHRCHWHCAYRPQ 335
>gb|CF672862.1|CF672862 RTCNT1_74_A10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_A10_A029 5', mRNA sequence
Length = 738
Score = 31.3 bits (62), Expect = 2.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2 / -1
Query: 116 CSYCCGRRRQCHNVR*SR 63
C Y C +R CHNVR +R
Sbjct: 141 CHYSCRKRNDCHNVRSNR 88
>gb|AL750044.1|AL750044 AL750044 AS Pinus pinaster cDNA clone AS05B08, mRNA sequence
Length = 616
Score = 30.9 bits (61), Expect = 3.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2 / +2
Query: 140 WQTPSCSACSYCCGRRRQCHNVR 72
W++P+ + C CGRR C+ VR
Sbjct: 311 WRSPNGNICRRRCGRR*SCNQVR 379
>gb|DR025104.1|DR025104 STRS1_69_D05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_D05_A034 5', mRNA sequence
Length = 480
Score = 30.9 bits (61), Expect = 3.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2 / -1
Query: 134 TPSCSACSYCCGRRRQCHNV 75
+PSCS+C+ CC R C +
Sbjct: 447 SPSCSSCTVCCLPNRTCQKM 388
>gb|AW043221.1|AW043221 ST30G04 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST30G04, mRNA sequence
Length = 601
Score = 30.4 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2 / +3
Query: 125 CSACSYCCGRRRQCHNVR*SRQTIQSCPAETKRSSL 18
CSA +CC + QC + C A K SL
Sbjct: 69 CSAALFCCSKLHQCSQNESQQPXDXCCEASCKAKSL 176
>gb|DR055752.1|DR055752 RTCA1_25_E04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_25_E04_A029 5', mRNA sequence
Length = 706
Score = 30.4 bits (60), Expect = 4.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2 / -1
Query: 116 CSYCCGRRRQCHNVR*SR 63
C Y C +R CHNVR +R
Sbjct: 367 CHYNCHKRNDCHNVRSNR 314
>emb|CR378169.1| Pinus pinaster SSR, clone PPC2C06
Length = 336
Score = 29.9 bits (59), Expect = 6.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2 / +2
Query: 236 MGCTXIMRPPIFKLA*ESSCWAFSRC 159
+ C ++ PPI SSC+ FS C
Sbjct: 137 LACIDVVSPPIVPFLSSSSCFCFSSC 214
>gb|CF670875.1|CF670875 RTCNT1_53_D11.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_D11_A029 3', mRNA sequence
Length = 748
Score = 29.5 bits (58), Expect = 9.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2 / -2
Query: 164 RC*TLSTTWQTPSCSACSYCCGRR 93
RC + S +Q +CS C YC RR
Sbjct: 342 RCRSSSVFFQAVACSVCWYCSQRR 271
>gb|DR022579.1|DR022579 STRS1_52_B08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_52_B08_A034 3', mRNA sequence
Length = 787
Score = 29.5 bits (58), Expect = 9.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2 / +2
Query: 17 QGYFAWSLLDNFEWFAGFTERYGIVYVDRNNNCTRYMKES 136
+GY W+L DN+E + ++G+ +D NN + S
Sbjct: 2 KGYCFWALSDNWESENEHSFKFGLAAIDSVNNLQHITRPS 121
>gb|DR072294.1|DR072294 RTDK1_25_G06.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_25_G06_A029 3', mRNA sequence
Length = 374
Score = 29.5 bits (58), Expect = 9.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2 / +1
Query: 131 PSCSACSYCCGRRRQC 84
PSCS+C+ C R R C
Sbjct: 103 PSCSSCTTSCARSRAC 150
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 145,837,804
Number of Sequences: 355925
Number of extensions: 1789111
Number of successful extensions: 82744
Number of sequences better than 10.0: 130
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 3354110620
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)