TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.19
(1410 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus adde... 60 5e-032
gb|AW011133.1|AW011133 ST17B02 Pine TriplEx shoot tip libra... 69 2e-031
gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinu... 60 2e-027
gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus adde... 60 2e-027
gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added... 60 7e-027
gb|CO161719.1|CO161719 FLD1_30_E10.g1_A029 Root flooded Pin... 49 4e-021
>gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_19_C01_A029 5', mRNA sequence
Length = 821
Score = 60.2 bits (125), Expect(4) = 5e-032
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = -3 / +3
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
V P+ A G+ +FK G GCG+CY+V+C E CS VTV ITD
Sbjct: 225 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 371
Score = 51.0 bits (105), Expect(4) = 5e-032
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -3 / +3
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AF +A G + + + G++ V FRRV C+YP
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 527
Score = 50.1 bits (103), Expect(4) = 5e-032
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 683
G+ I F++ G + + A+L++Y DGD+ + I+ S W+ M+ +WGA W +++
Sbjct: 528 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 701
Score = 33.1 bits (66), Expect(4) = 5e-032
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3 / +3
Query: 637 SGKKVIAKDVIPANWRPDAVYTSNV 563
+G+ + A +VIP NW+P A Y S V
Sbjct: 747 TGRTLTANNVIPQNWQPGATYRSLV 821
>gb|AW011133.1|AW011133 ST17B02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST17B02, mRNA sequence
Length = 598
Score = 68.9 bits (144), Expect(3) = 2e-031
Identities = 26/80 (32%), Positives = 46/80 (57%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAK 677
G+ I FH+ +G + ++L+ Y DGD+ M ++ S W M+ WGA W +
Sbjct: 260 GKNITFHVTEGSTAYWFSILIGYEDGDGDVGAMHLKQAESDAWMEMRHVWGANWCLLGND 439
Query: 676 ALKGPFSIRLTSESGKKVIA 617
+LK PFS+R+T+ + K+ ++
Sbjct: 440 SLKXPFSVRVTTLTSKRTLS 499
Score = 60.6 bits (126), Expect(3) = 2e-031
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = -3 / +2
Query: 1102 IFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
+FK G+GCG+CY+V+C EK CS PVTV ITD
Sbjct: 8 VFKGGEGCGACYKVKCMEKGSCSEKPVTVVITD 106
Score = 45.5 bits (93), Expect(3) = 2e-031
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = -3 / +2
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG +A G + + G + V +RR C+YP
Sbjct: 143 HFDLSGAAFGHMATNGKTPALLNSGELPVLYRRTLCEYP 259
>gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_9_H09_A029 5', mRNA sequence
Length = 806
Score = 60.2 bits (125), Expect(3) = 2e-027
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = -3 / +2
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
V P+ A G+ +FK G GCG+CY+V+C E CS VTV ITD
Sbjct: 254 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 400
Score = 51.0 bits (105), Expect(3) = 2e-027
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -3 / +2
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AF +A G + + + G++ V FRRV C+YP
Sbjct: 440 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 556
Score = 50.1 bits (103), Expect(3) = 2e-027
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 683
G+ I F++ G + + A+L++Y DGD+ + I+ S W+ M+ +WGA W +++
Sbjct: 557 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 730
>gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_D05_A029 3', mRNA sequence
Length = 793
Score = 60.2 bits (125), Expect(3) = 2e-027
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = -3 / -1
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
V P+ A G+ +FK G GCG+CY+V+C E CS VTV ITD
Sbjct: 526 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 380
Score = 51.0 bits (105), Expect(3) = 2e-027
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -3 / -1
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AF +A G + + + G++ V FRRV C+YP
Sbjct: 340 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 224
Score = 50.1 bits (103), Expect(3) = 2e-027
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = -3 / -1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 683
G+ I F++ G + + A+L++Y DGD+ + I+ S W+ M+ +WGA W +++
Sbjct: 223 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 50
>gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F09_A029 5', mRNA sequence
Length = 717
Score = 60.2 bits (125), Expect(3) = 7e-027
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = -3 / +3
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
V P+ A G+ +FK G GCG+CY+V+C E CS VTV ITD
Sbjct: 225 VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 371
Score = 51.0 bits (105), Expect(3) = 7e-027
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -3 / +3
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AF +A G + + + G++ V FRRV C+YP
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 527
Score = 48.3 bits (99), Expect(3) = 7e-027
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 683
G+ I F++ G + + A+L++Y DGD+ + I+ S W+ M+ +WG W +++
Sbjct: 528 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGCNWCLNS 701
>gb|CO161719.1|CO161719 FLD1_30_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_30_E10_A029 5', mRNA sequence
Length = 853
Score = 49.2 bits (101), Expect(4) = 4e-021
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = -3 / +2
Query: 1102 IFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
++++G GCG+CY+VRCK K C V + +TD
Sbjct: 257 LYRNGTGCGACYKVRCKNKDLCRSEGVKIVVTD 355
Score = 43.2 bits (88), Expect(4) = 4e-021
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = -3 / +2
Query: 817 PNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 683
P YLA++ Y A D++ ++++ + S +WK M S GA+W + T
Sbjct: 536 PEYLALIFWYQAGQKDVLAIQVRQEESYDWKAMYRSHGAVWDVVT 670
Score = 33.1 bits (66), Expect(4) = 4e-021
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -3 / +2
Query: 973 FDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKY 863
F +S + L +P +++ G++D+E++R+ C+Y
Sbjct: 380 FIMSLHGYSKLGRPDKANQLISLGVVDIEYKRIPCQY 490
Score = 31.3 bits (62), Expect(4) = 4e-021
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3 / +2
Query: 625 VIAKDVIPANWRPDAVYTSNVQ 560
V + VIPANW+ A+Y S +Q
Sbjct: 731 VSSAHVIPANWKAGAIYDSGIQ 796
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 754,053,965
Number of Sequences: 355925
Number of extensions: 12064999
Number of successful extensions: 72751
Number of sequences better than 1.0e-020: 7
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 22080404925
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)