TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161272.2.19
         (1410 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR387113.1|DR387113  RTHG1_19_C01.g1_A029 Roots plus adde...    60   5e-032
gb|AW011133.1|AW011133  ST17B02 Pine TriplEx shoot tip libra...    69   2e-031
gb|CO158884.1|CO158884  FLD1_9_H09.g1_A029 Root flooded Pinu...    60   2e-027
gb|DR743783.1|DR743783  RTCU1_18_D05.b1_A029 Roots plus adde...    60   2e-027
gb|DR385457.1|DR385457  RTHG1_8_F09.g1_A029 Roots plus added...    60   7e-027
gb|CO161719.1|CO161719  FLD1_30_E10.g1_A029 Root flooded Pin...    49   4e-021
>gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
            RTHG1_19_C01_A029 5', mRNA sequence
          Length = 821

 Score = 60.2 bits (125), Expect(4) = 5e-032
 Identities = 23/49 (46%), Positives = 29/49 (59%)
 Frame = -3 / +3

                                                             
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
            V   P+    A G+  +FK G GCG+CY+V+C E   CS   VTV ITD
Sbjct: 225  VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 371

 Score = 51.0 bits (105), Expect(4) = 5e-032
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = -3 / +3

                                                  
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
           HFDLSG AF  +A  G +  + + G++ V FRRV C+YP
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 527

 Score = 50.1 bits (103), Expect(4) = 5e-032
 Identities = 18/58 (31%), Positives = 35/58 (60%)
 Frame = -3 / +3

                                                                     
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 683
           G+ I F++  G +  + A+L++Y   DGD+  + I+   S  W+ M+ +WGA W +++
Sbjct: 528 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 701

 Score = 33.1 bits (66), Expect(4) = 5e-032
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3 / +3

                                    
Query: 637 SGKKVIAKDVIPANWRPDAVYTSNV 563
           +G+ + A +VIP NW+P A Y S V
Sbjct: 747 TGRTLTANNVIPQNWQPGATYRSLV 821
>gb|AW011133.1|AW011133 ST17B02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
           ST17B02, mRNA sequence
          Length = 598

 Score = 68.9 bits (144), Expect(3) = 2e-031
 Identities = 26/80 (32%), Positives = 46/80 (57%)
 Frame = -3 / +2

                                                                       
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAK 677
           G+ I FH+ +G    + ++L+ Y   DGD+  M ++   S  W  M+  WGA W +    
Sbjct: 260 GKNITFHVTEGSTAYWFSILIGYEDGDGDVGAMHLKQAESDAWMEMRHVWGANWCLLGND 439

                               
Query: 676 ALKGPFSIRLTSESGKKVIA 617
           +LK PFS+R+T+ + K+ ++
Sbjct: 440 SLKXPFSVRVTTLTSKRTLS 499

 Score = 60.6 bits (126), Expect(3) = 2e-031
 Identities = 21/33 (63%), Positives = 26/33 (78%)
 Frame = -3 / +2

                                             
Query: 1102 IFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
            +FK G+GCG+CY+V+C EK  CS  PVTV ITD
Sbjct: 8    VFKGGEGCGACYKVKCMEKGSCSEKPVTVVITD 106

 Score = 45.5 bits (93), Expect(3) = 2e-031
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = -3 / +2

                                                  
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
           HFDLSG AFG +A  G    + + G + V +RR  C+YP
Sbjct: 143 HFDLSGAAFGHMATNGKTPALLNSGELPVLYRRTLCEYP 259
>gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinus taeda cDNA clone
            FLD1_9_H09_A029 5', mRNA sequence
          Length = 806

 Score = 60.2 bits (125), Expect(3) = 2e-027
 Identities = 23/49 (46%), Positives = 29/49 (59%)
 Frame = -3 / +2

                                                             
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
            V   P+    A G+  +FK G GCG+CY+V+C E   CS   VTV ITD
Sbjct: 254  VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 400

 Score = 51.0 bits (105), Expect(3) = 2e-027
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = -3 / +2

                                                  
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
           HFDLSG AF  +A  G +  + + G++ V FRRV C+YP
Sbjct: 440 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 556

 Score = 50.1 bits (103), Expect(3) = 2e-027
 Identities = 18/58 (31%), Positives = 35/58 (60%)
 Frame = -3 / +2

                                                                     
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 683
           G+ I F++  G +  + A+L++Y   DGD+  + I+   S  W+ M+ +WGA W +++
Sbjct: 557 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 730
>gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
            RTCU1_18_D05_A029 3', mRNA sequence
          Length = 793

 Score = 60.2 bits (125), Expect(3) = 2e-027
 Identities = 23/49 (46%), Positives = 29/49 (59%)
 Frame = -3 / -1

                                                             
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
            V   P+    A G+  +FK G GCG+CY+V+C E   CS   VTV ITD
Sbjct: 526  VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 380

 Score = 51.0 bits (105), Expect(3) = 2e-027
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = -3 / -1

                                                  
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
           HFDLSG AF  +A  G +  + + G++ V FRRV C+YP
Sbjct: 340 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 224

 Score = 50.1 bits (103), Expect(3) = 2e-027
 Identities = 18/58 (31%), Positives = 35/58 (60%)
 Frame = -3 / -1

                                                                     
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 683
           G+ I F++  G +  + A+L++Y   DGD+  + I+   S  W+ M+ +WGA W +++
Sbjct: 223 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 50
>gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
            RTHG1_8_F09_A029 5', mRNA sequence
          Length = 717

 Score = 60.2 bits (125), Expect(3) = 7e-027
 Identities = 23/49 (46%), Positives = 29/49 (59%)
 Frame = -3 / +3

                                                             
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
            V   P+    A G+  +FK G GCG+CY+V+C E   CS   VTV ITD
Sbjct: 225  VKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVITD 371

 Score = 51.0 bits (105), Expect(3) = 7e-027
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = -3 / +3

                                                  
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
           HFDLSG AF  +A  G +  + + G++ V FRRV C+YP
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 527

 Score = 48.3 bits (99), Expect(3) = 7e-027
 Identities = 17/58 (29%), Positives = 34/58 (58%)
 Frame = -3 / +3

                                                                     
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 683
           G+ I F++  G +  + A+L++Y   DGD+  + I+   S  W+ M+ +WG  W +++
Sbjct: 528 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGCNWCLNS 701
>gb|CO161719.1|CO161719 FLD1_30_E10.g1_A029 Root flooded Pinus taeda cDNA clone
            FLD1_30_E10_A029 5', mRNA sequence
          Length = 853

 Score = 49.2 bits (101), Expect(4) = 4e-021
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -3 / +2

                                             
Query: 1102 IFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
            ++++G GCG+CY+VRCK K  C    V + +TD
Sbjct: 257  LYRNGTGCGACYKVRCKNKDLCRSEGVKIVVTD 355

 Score = 43.2 bits (88), Expect(4) = 4e-021
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -3 / +2

                                                        
Query: 817 PNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 683
           P YLA++  Y A   D++ ++++ + S +WK M  S GA+W + T
Sbjct: 536 PEYLALIFWYQAGQKDVLAIQVRQEESYDWKAMYRSHGAVWDVVT 670

 Score = 33.1 bits (66), Expect(4) = 4e-021
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -3 / +2

                                                
Query: 973 FDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKY 863
           F +S   +  L +P   +++   G++D+E++R+ C+Y
Sbjct: 380 FIMSLHGYSKLGRPDKANQLISLGVVDIEYKRIPCQY 490

 Score = 31.3 bits (62), Expect(4) = 4e-021
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3 / +2

                                 
Query: 625 VIAKDVIPANWRPDAVYTSNVQ 560
           V +  VIPANW+  A+Y S +Q
Sbjct: 731 VSSAHVIPANWKAGAIYDSGIQ 796
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 754,053,965
Number of Sequences: 355925
Number of extensions: 12064999
Number of successful extensions: 72751
Number of sequences better than 1.0e-020: 7
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 22080404925
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)