TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.15
(797 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW011133.1|AW011133 ST17B02 Pine TriplEx shoot tip libra... 67 1e-029
gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus adde... 52 5e-028
gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinu... 52 2e-023
gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus adde... 52 2e-023
gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added... 52 6e-023
>gb|AW011133.1|AW011133 ST17B02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST17B02, mRNA sequence
Length = 598
Score = 67.0 bits (140), Expect(3) = 1e-029
Identities = 25/80 (31%), Positives = 46/80 (57%)
Frame = +2 / +2
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAK 415
G+ I FH+ +G + ++L+ + DGD+ M ++ S W M+ WGA W +
Sbjct: 260 GKNITFHVTEGSTAYWFSILIGYEDGDGDVGAMHLKQAESDAWMEMRHVWGANWCLLGND 439
Query: 416 ALKGPFSIRLTSESGKKVIA 475
+LK PFS+R+T+ + K+ ++
Sbjct: 440 SLKXPFSVRVTTLTSKRTLS 499
Score = 54.7 bits (113), Expect(3) = 1e-029
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2 / +2
Query: 2 GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
G+GCG+CY+V+C EK CS PVTV ITD
Sbjct: 20 GEGCGACYKVKCMEKGSCSEKPVTVVITD 106
Score = 46.4 bits (95), Expect(3) = 1e-029
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +2 / +2
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
HFDLSG AFG +A G L + G + V +RR C+YP
Sbjct: 143 HFDLSGAAFGHMATNGKTPALLNSGELPVLYRRTLCEYP 259
>gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_19_C01_A029 5', mRNA sequence
Length = 821
Score = 51.9 bits (107), Expect(4) = 5e-028
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2 / +3
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
HFDLSG AF +A G + L + G++ V FRRV C+YP
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 527
Score = 48.3 bits (99), Expect(4) = 5e-028
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = +2 / +3
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 409
G+ I F++ G + + A+L+++ DGD+ + I+ S W+ M+ +WGA W +++
Sbjct: 528 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 701
Score = 46.9 bits (96), Expect(4) = 5e-028
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2 / +3
Query: 2 GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
G GCG+CY+V+C E CS VTV ITD
Sbjct: 285 GTGCGACYQVKCTENGLCSQTAVTVVITD 371
Score = 32.7 bits (65), Expect(4) = 5e-028
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2 / +3
Query: 455 SGKKVIAKDIIPANWRPDAVYTSNV 529
+G+ + A ++IP NW+P A Y S V
Sbjct: 747 TGRTLTANNVIPQNWQPGATYRSLV 821
>gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_9_H09_A029 5', mRNA sequence
Length = 806
Score = 51.9 bits (107), Expect(3) = 2e-023
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2 / +2
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
HFDLSG AF +A G + L + G++ V FRRV C+YP
Sbjct: 440 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 556
Score = 48.3 bits (99), Expect(3) = 2e-023
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = +2 / +2
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 409
G+ I F++ G + + A+L+++ DGD+ + I+ S W+ M+ +WGA W +++
Sbjct: 557 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 730
Score = 46.9 bits (96), Expect(3) = 2e-023
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2 / +2
Query: 2 GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
G GCG+CY+V+C E CS VTV ITD
Sbjct: 314 GTGCGACYQVKCTENGLCSQTAVTVVITD 400
>gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_D05_A029 3', mRNA sequence
Length = 793
Score = 51.9 bits (107), Expect(3) = 2e-023
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2 / -1
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
HFDLSG AF +A G + L + G++ V FRRV C+YP
Sbjct: 340 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 224
Score = 48.3 bits (99), Expect(3) = 2e-023
Identities = 17/58 (29%), Positives = 35/58 (60%)
Frame = +2 / -1
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 409
G+ I F++ G + + A+L+++ DGD+ + I+ S W+ M+ +WGA W +++
Sbjct: 223 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 50
Score = 46.9 bits (96), Expect(3) = 2e-023
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2 / -1
Query: 2 GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
G GCG+CY+V+C E CS VTV ITD
Sbjct: 466 GTGCGACYQVKCTENGLCSQTAVTVVITD 380
>gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F09_A029 5', mRNA sequence
Length = 717
Score = 51.9 bits (107), Expect(3) = 6e-023
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2 / +3
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
HFDLSG AF +A G + L + G++ V FRRV C+YP
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 527
Score = 46.9 bits (96), Expect(3) = 6e-023
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2 / +3
Query: 2 GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
G GCG+CY+V+C E CS VTV ITD
Sbjct: 285 GTGCGACYQVKCTENGLCSQTAVTVVITD 371
Score = 46.4 bits (95), Expect(3) = 6e-023
Identities = 16/58 (27%), Positives = 34/58 (58%)
Frame = +2 / +3
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 409
G+ I F++ G + + A+L+++ DGD+ + I+ S W+ M+ +WG W +++
Sbjct: 528 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGCNWCLNS 701
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 460,774,311
Number of Sequences: 355925
Number of extensions: 7264009
Number of successful extensions: 57018
Number of sequences better than 1.0e-020: 6
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11484458385
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)