TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161272.2.15
         (797 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW011133.1|AW011133  ST17B02 Pine TriplEx shoot tip libra...    67   1e-029
gb|DR387113.1|DR387113  RTHG1_19_C01.g1_A029 Roots plus adde...    52   5e-028
gb|CO158884.1|CO158884  FLD1_9_H09.g1_A029 Root flooded Pinu...    52   2e-023
gb|DR743783.1|DR743783  RTCU1_18_D05.b1_A029 Roots plus adde...    52   2e-023
gb|DR385457.1|DR385457  RTHG1_8_F09.g1_A029 Roots plus added...    52   6e-023
>gb|AW011133.1|AW011133 ST17B02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
           ST17B02, mRNA sequence
          Length = 598

 Score = 67.0 bits (140), Expect(3) = 1e-029
 Identities = 25/80 (31%), Positives = 46/80 (57%)
 Frame = +2 / +2

                                                                       
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAK 415
           G+ I FH+ +G    + ++L+ +   DGD+  M ++   S  W  M+  WGA W +    
Sbjct: 260 GKNITFHVTEGSTAYWFSILIGYEDGDGDVGAMHLKQAESDAWMEMRHVWGANWCLLGND 439

                               
Query: 416 ALKGPFSIRLTSESGKKVIA 475
           +LK PFS+R+T+ + K+ ++
Sbjct: 440 SLKXPFSVRVTTLTSKRTLS 499

 Score = 54.7 bits (113), Expect(3) = 1e-029
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +2 / +2

                                        
Query: 2   GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
           G+GCG+CY+V+C EK  CS  PVTV ITD
Sbjct: 20  GEGCGACYKVKCMEKGSCSEKPVTVVITD 106

 Score = 46.4 bits (95), Expect(3) = 1e-029
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +2 / +2

                                                  
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
           HFDLSG AFG +A  G    L + G + V +RR  C+YP
Sbjct: 143 HFDLSGAAFGHMATNGKTPALLNSGELPVLYRRTLCEYP 259
>gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus added mercury Pinus taeda cDNA
           clone RTHG1_19_C01_A029 5', mRNA sequence
          Length = 821

 Score = 51.9 bits (107), Expect(4) = 5e-028
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = +2 / +3

                                                  
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
           HFDLSG AF  +A  G +  L + G++ V FRRV C+YP
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 527

 Score = 48.3 bits (99), Expect(4) = 5e-028
 Identities = 17/58 (29%), Positives = 35/58 (60%)
 Frame = +2 / +3

                                                                     
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 409
           G+ I F++  G +  + A+L+++   DGD+  + I+   S  W+ M+ +WGA W +++
Sbjct: 528 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 701

 Score = 46.9 bits (96), Expect(4) = 5e-028
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +2 / +3

                                        
Query: 2   GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
           G GCG+CY+V+C E   CS   VTV ITD
Sbjct: 285 GTGCGACYQVKCTENGLCSQTAVTVVITD 371

 Score = 32.7 bits (65), Expect(4) = 5e-028
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2 / +3

                                    
Query: 455 SGKKVIAKDIIPANWRPDAVYTSNV 529
           +G+ + A ++IP NW+P A Y S V
Sbjct: 747 TGRTLTANNVIPQNWQPGATYRSLV 821
>gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_9_H09_A029 5', mRNA sequence
          Length = 806

 Score = 51.9 bits (107), Expect(3) = 2e-023
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = +2 / +2

                                                  
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
           HFDLSG AF  +A  G +  L + G++ V FRRV C+YP
Sbjct: 440 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 556

 Score = 48.3 bits (99), Expect(3) = 2e-023
 Identities = 17/58 (29%), Positives = 35/58 (60%)
 Frame = +2 / +2

                                                                     
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 409
           G+ I F++  G +  + A+L+++   DGD+  + I+   S  W+ M+ +WGA W +++
Sbjct: 557 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 730

 Score = 46.9 bits (96), Expect(3) = 2e-023
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +2 / +2

                                        
Query: 2   GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
           G GCG+CY+V+C E   CS   VTV ITD
Sbjct: 314 GTGCGACYQVKCTENGLCSQTAVTVVITD 400
>gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
           RTCU1_18_D05_A029 3', mRNA sequence
          Length = 793

 Score = 51.9 bits (107), Expect(3) = 2e-023
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = +2 / -1

                                                  
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
           HFDLSG AF  +A  G +  L + G++ V FRRV C+YP
Sbjct: 340 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 224

 Score = 48.3 bits (99), Expect(3) = 2e-023
 Identities = 17/58 (29%), Positives = 35/58 (60%)
 Frame = +2 / -1

                                                                     
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 409
           G+ I F++  G +  + A+L+++   DGD+  + I+   S  W+ M+ +WGA W +++
Sbjct: 223 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 50

 Score = 46.9 bits (96), Expect(3) = 2e-023
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +2 / -1

                                        
Query: 2   GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
           G GCG+CY+V+C E   CS   VTV ITD
Sbjct: 466 GTGCGACYQVKCTENGLCSQTAVTVVITD 380
>gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
           RTHG1_8_F09_A029 5', mRNA sequence
          Length = 717

 Score = 51.9 bits (107), Expect(3) = 6e-023
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = +2 / +3

                                                  
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
           HFDLSG AF  +A  G +  L + G++ V FRRV C+YP
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 527

 Score = 46.9 bits (96), Expect(3) = 6e-023
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +2 / +3

                                        
Query: 2   GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
           G GCG+CY+V+C E   CS   VTV ITD
Sbjct: 285 GTGCGACYQVKCTENGLCSQTAVTVVITD 371

 Score = 46.4 bits (95), Expect(3) = 6e-023
 Identities = 16/58 (27%), Positives = 34/58 (58%)
 Frame = +2 / +3

                                                                     
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 409
           G+ I F++  G +  + A+L+++   DGD+  + I+   S  W+ M+ +WG  W +++
Sbjct: 528 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGCNWCLNS 701
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 460,774,311
Number of Sequences: 355925
Number of extensions: 7264009
Number of successful extensions: 57018
Number of sequences better than 1.0e-020: 6
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11484458385
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)