TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161272.2.1
         (747 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR743865.1|DR743865  RTCU1_18_D05.g1_A029 Roots plus adde...    52   1e-020

>gb|DR743865.1|DR743865 RTCU1_18_D05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
           RTCU1_18_D05_A029 5', mRNA sequence
          Length = 707

 Score = 51.9 bits (107), Expect(3) = 1e-020
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = +3 / -2

                                                  
Query: 54  HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 170
           HFDLSG AF  +A  G +  L + G++ V FRRV C+YP
Sbjct: 697 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYP 581




 Score = 48.3 bits (99), Expect(3) = 1e-020
 Identities = 17/58 (29%), Positives = 35/58 (60%)
 Frame = +3 / -2

                                                                     
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDT 347
           G+ I F++  G +  + A+L+++   DGD+  + I+   S  W+ M+ +WGA W +++
Sbjct: 580 GKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNS 407




 Score = 37.3 bits (75), Expect(3) = 1e-020
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3 / -2

                                             
Query: 393 SGKKVIAKDVIPPNWRPDAVYTSNVQFY*TLNSL 494
           +G+ + A +VIP NW+P A Y S V ++*+ + L
Sbjct: 361 TGRTLTANNVIPQNWQPGATYRSLVNYH*SPSEL 260



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 427,280,642
Number of Sequences: 355925
Number of extensions: 6958871
Number of successful extensions: 62751
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10567858420
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)