TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.1
(845 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR744307.1|DR744307 RTCU1_21_D02.g1_A029 Roots plus adde... 197 2e-051
gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response R... 197 2e-051
gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus add... 197 2e-051
gb|DR169132.1|DR169132 RTPHOS1_30_F09.b1_A029 Roots minus p... 197 2e-051
gb|CX652902.1|CX652902 COLD1_62_E09.b1_A029 Root cold Pinus... 197 2e-051
gb|BX680640.1|BX680640 BX680640 RS Pinus pinaster cDNA clon... 197 2e-051
gb|BQ654431.1|BQ654431 NXRV080_B12_F NXRV (Nsf Xylem Root w... 197 2e-051
gb|BG625807.1|BG625807 NXPV_066_C10_F NXPV (Nsf Xylem Plani... 197 2e-051
gb|BQ698529.1|BQ698529 NXPV_071_A11_F NXPV (Nsf Xylem Plani... 197 2e-051
gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciat... 195 9e-051
gb|CX648273.1|CX648273 COLD1_27_D03.g1_A029 Root cold Pinus... 194 2e-050
gb|CO172739.1|CO172739 NDL1_31_C08.g1_A029 Needles control ... 194 2e-050
gb|DR096719.1|DR096719 STRR1_29_G07.g1_A033 Stem Response R... 194 2e-050
gb|AW290720.1|AW290720 NXNV046B09F Nsf Xylem Normal wood Ve... 194 2e-050
gb|CD027383.1|CD027383 NXNV046B09 Nsf Xylem Normal wood Ver... 194 2e-050
gb|CO361699.1|CO361699 NDL2_6_B04.g1_A029 Needles control 2... 191 1e-049
gb|DR385816.1|DR385816 RTHG1_11_C03.b1_A029 Roots plus adde... 190 2e-049
gb|BF010621.1|BF010621 NXCI_087_A08_F NXCI (Nsf Xylem Compr... 188 6e-047
gb|CV032797.1|CV032797 RTNACL1_18_H11.b1_A029 Roots plus ad... 177 4e-046
gb|CV033821.1|CV033821 RTNACL1_36_G06.g1_A029 Roots plus ad... 178 1e-045
gb|DR078575.1|DR078575 RTFEPL1_5_C10.g1_A029 Roots plus add... 177 2e-045
gb|DR020418.1|DR020418 STRS1_36_G05.g1_A034 Shoot tip pitch... 172 4e-044
gb|DR051556.1|DR051556 RTBOR1_30_H04.g1_A029 Roots plus add... 172 4e-044
gb|DR164313.1|DR164313 RTFE1_48_E03.b1_A029 Roots minus iro... 171 2e-043
gb|CF667382.1|CF667382 RTCNT1_29_H05.g1_A029 Root control P... 171 2e-043
gb|BX255006.1|BX255006 BX255006 Pinus pinaster differenciat... 156 4e-039
gb|BX682244.2|BX682244 BX682244 Pinus pinaster differenciat... 155 1e-038
gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered lo... 159 3e-038
gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes ... 158 6e-038
gb|CF389328.1|CF389328 RTDR2_9_B11.g1_A021 Loblolly pine ro... 147 1e-036
gb|CV033733.1|CV033733 RTNACL1_36_G06.b1_A029 Roots plus ad... 142 5e-035
gb|DR096912.1|DR096912 STRR1_31_E11.b1_A033 Stem Response R... 142 5e-035
gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root w... 146 2e-034
gb|DR744237.1|DR744237 RTCU1_21_D02.b1_A029 Roots plus adde... 140 2e-034
gb|CO361628.1|CO361628 NDL2_6_B04.b1_A029 Needles control 2... 137 2e-033
gb|CX648196.1|CX648196 COLD1_27_D03.b1_A029 Root cold Pinus... 134 1e-032
gb|BQ695579.1|BQ695579 NXPV_030_B08_F NXPV (Nsf Xylem Plani... 134 1e-032
gb|AI812676.1|AI812676 17G4 Pine Lambda Zap Xylem library P... 132 5e-032
gb|DR096648.1|DR096648 STRR1_29_G07.b1_A033 Stem Response R... 128 6e-031
gb|BQ700793.1|BQ700793 NXRV111_D08_F NXRV (Nsf Xylem Root w... 69 2e-030
gb|AW984873.1|AW984873 NXNV_119_G09_F Nsf Xylem Normal wood... 127 1e-028
gb|CF667305.1|CF667305 RTCNT1_29_H05.b1_A029 Root control P... 97 1e-028
gb|CF475336.1|CF475336 RTWW2_13_F07.g1_A021 Well-watered lo... 112 1e-026
gb|BQ702675.1|BQ702675 NXSI_131_C04_F NXSI (Nsf Xylem Side ... 113 2e-026
gb|DR179146.1|DR179146 RTMNUT1_16_F11.b1_A029 Roots minus m... 76 5e-024
gb|DR179224.1|DR179224 RTMNUT1_16_F11.g1_A029 Roots minus m... 76 5e-024
gb|DR013159.1|DR013159 HEAT1_17_H11.b1_A029 Root at 37 C fo... 76 5e-024
gb|BQ699374.1|BQ699374 NXRV126_H08_F NXRV (Nsf Xylem Root w... 67 5e-024
gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered lo... 111 7e-024
gb|DR167591.1|DR167591 RTPHOS1_19_F11.g1_A029 Roots minus p... 67 7e-024
gb|BX678371.1|BX678371 BX678371 RS Pinus pinaster cDNA clon... 66 2e-023
gb|DR072510.1|DR072510 RTDK1_26_F03.g1_A029 Roots, dark Pin... 73 9e-023
gb|U76725.1|PRU76725 Pinus radiata endo-beta-1,4-glucanase ... 63 1e-021
gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus pota... 64 1e-021
>gb|DR744307.1|DR744307 RTCU1_21_D02.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_D02_A029 5', mRNA sequence
Length = 871
Score = 197 bits (425), Expect(2) = 2e-051
Identities = 76/122 (62%), Positives = 93/122 (76%)
Frame = -2 / +1
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 37 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 216
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIK 455
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 217 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGD 396
Query: 454 TG 449
TG
Sbjct: 397 TG 402
Score = 25.8 bits (50), Expect(2) = 2e-051
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 403 GIDKNTMFSAV 435
>gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E11_A033 5', mRNA sequence
Length = 796
Score = 197 bits (425), Expect(2) = 2e-051
Identities = 76/122 (62%), Positives = 93/122 (76%)
Frame = -2 / +2
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 161 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 340
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIK 455
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 341 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGD 520
Query: 454 TG 449
TG
Sbjct: 521 TG 526
Score = 25.8 bits (50), Expect(2) = 2e-051
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 527 GIDKNTMFSAV 559
>gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C10_A029 3', mRNA sequence
Length = 779
Score = 197 bits (425), Expect(2) = 2e-051
Identities = 76/122 (62%), Positives = 93/122 (76%)
Frame = -2 / -2
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 634 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 455
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIK 455
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 454 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGD 275
Query: 454 TG 449
TG
Sbjct: 274 TG 269
Score = 25.8 bits (50), Expect(2) = 2e-051
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / -2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 268 GIDKNTMFSAV 236
>gb|DR169132.1|DR169132 RTPHOS1_30_F09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_F09_A029 3', mRNA sequence
Length = 765
Score = 197 bits (425), Expect(2) = 2e-051
Identities = 76/122 (62%), Positives = 93/122 (76%)
Frame = -2 / -2
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 692 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 513
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIK 455
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 512 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGD 333
Query: 454 TG 449
TG
Sbjct: 332 TG 327
Score = 25.8 bits (50), Expect(2) = 2e-051
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / -2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 326 GIDKNTMFSAV 294
>gb|CX652902.1|CX652902 COLD1_62_E09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_E09_A029 3', mRNA sequence
Length = 717
Score = 197 bits (425), Expect(2) = 2e-051
Identities = 76/122 (62%), Positives = 93/122 (76%)
Frame = -2 / -2
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 596 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 417
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIK 455
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 416 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGD 237
Query: 454 TG 449
TG
Sbjct: 236 TG 231
Score = 25.8 bits (50), Expect(2) = 2e-051
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / -2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 230 GIDKNTMFSAV 198
>gb|BX680640.1|BX680640 BX680640 RS Pinus pinaster cDNA clone RS46D05, mRNA sequence
Length = 578
Score = 197 bits (425), Expect(2) = 2e-051
Identities = 76/122 (62%), Positives = 93/122 (76%)
Frame = -2 / +3
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 102 PNFFSTETLRDFARTQINYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKG 281
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIK 455
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 282 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGD 461
Query: 454 TG 449
TG
Sbjct: 462 TG 467
Score = 25.8 bits (50), Expect(2) = 2e-051
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 468 GIDKNTMFSAV 500
>gb|BQ654431.1|BQ654431 NXRV080_B12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV080_B12 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 197 bits (425), Expect(2) = 2e-051
Identities = 76/122 (62%), Positives = 93/122 (76%)
Frame = -2 / +3
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 6 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 185
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIK 455
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 186 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGD 365
Query: 454 TG 449
TG
Sbjct: 366 TG 371
Score = 25.8 bits (50), Expect(2) = 2e-051
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 372 GIDKNTMFSAV 404
>gb|BG625807.1|BG625807 NXPV_066_C10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_066_C10 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 520
Score = 197 bits (425), Expect(2) = 2e-051
Identities = 76/122 (62%), Positives = 93/122 (76%)
Frame = -2 / +2
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 77 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 256
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIK 455
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 257 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGD 436
Query: 454 TG 449
TG
Sbjct: 437 TG 442
Score = 25.8 bits (50), Expect(2) = 2e-051
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 443 GIDKNTMFSAV 475
>gb|BQ698529.1|BQ698529 NXPV_071_A11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_071_A11 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 518
Score = 197 bits (425), Expect(2) = 2e-051
Identities = 76/122 (62%), Positives = 93/122 (76%)
Frame = -2 / +2
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 77 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 256
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIK 455
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 257 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGD 436
Query: 454 TG 449
TG
Sbjct: 437 TG 442
Score = 25.8 bits (50), Expect(2) = 2e-051
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 443 GIDKNTMFSAV 475
>gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007E03 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 693
Score = 195 bits (420), Expect(2) = 9e-051
Identities = 74/117 (63%), Positives = 91/117 (77%)
Frame = -2 / +3
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 261 PNFFSTETLRDFARTQINYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKG 440
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISIS 464
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S
Sbjct: 441 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLS 611
Score = 25.8 bits (50), Expect(2) = 9e-051
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 627 GIDKNTMFSAV 659
>gb|CX648273.1|CX648273 COLD1_27_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_D03_A029 5', mRNA sequence
Length = 830
Score = 194 bits (418), Expect(2) = 2e-050
Identities = 74/107 (69%), Positives = 89/107 (83%)
Frame = -2 / +2
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 590
Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 41 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 220
Query: 589 VGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 221 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 361
Score = 25.8 bits (50), Expect(2) = 2e-050
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 362 GIDKNTMFSAV 394
>gb|CO172739.1|CO172739 NDL1_31_C08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_C08_A029 5', mRNA sequence
Length = 816
Score = 194 bits (418), Expect(2) = 2e-050
Identities = 74/107 (69%), Positives = 89/107 (83%)
Frame = -2 / +3
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 590
Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 3 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 182
Query: 589 VGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 183 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 323
Score = 25.8 bits (50), Expect(2) = 2e-050
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 324 GIDKNTMFSAV 356
>gb|DR096719.1|DR096719 STRR1_29_G07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_29_G07_A033 5', mRNA sequence
Length = 747
Score = 194 bits (418), Expect(2) = 2e-050
Identities = 74/107 (69%), Positives = 89/107 (83%)
Frame = -2 / +3
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 590
Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 21 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 200
Query: 589 VGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 201 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 341
Score = 25.8 bits (50), Expect(2) = 2e-050
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 342 GIDKNTMFSAV 374
>gb|AW290720.1|AW290720 NXNV046B09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046B09 5', mRNA sequence
Length = 450
Score = 194 bits (418), Expect(2) = 2e-050
Identities = 74/107 (69%), Positives = 89/107 (83%)
Frame = -2 / +3
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 590
Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 3 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 182
Query: 589 VGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 183 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 323
Score = 25.8 bits (50), Expect(2) = 2e-050
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 324 GIDKNTMFSAV 356
>gb|CD027383.1|CD027383 NXNV046B09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046B09 5' similar to Arabidopsis thaliana sequence
At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 450
Score = 194 bits (418), Expect(2) = 2e-050
Identities = 74/107 (69%), Positives = 89/107 (83%)
Frame = -2 / +3
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 590
Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 3 QINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 182
Query: 589 VGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 183 VGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 323
Score = 25.8 bits (50), Expect(2) = 2e-050
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 324 GIDKNTMFSAV 356
>gb|CO361699.1|CO361699 NDL2_6_B04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B04_A029 5', mRNA sequence
Length = 818
Score = 191 bits (411), Expect(2) = 1e-049
Identities = 73/105 (69%), Positives = 87/105 (82%)
Frame = -2 / +1
Query: 763 DYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVG 584
+YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VG
Sbjct: 10 NYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVG 189
Query: 583 AMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
AMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 190 AMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 324
Score = 25.8 bits (50), Expect(2) = 1e-049
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 325 GIDKNTMFSAV 357
>gb|DR385816.1|DR385816 RTHG1_11_C03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_C03_A029 3', mRNA sequence
Length = 754
Score = 190 bits (410), Expect(2) = 2e-049
Identities = 73/104 (70%), Positives = 86/104 (82%)
Frame = -2 / -3
Query: 760 YIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGA 581
YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGA
Sbjct: 752 YILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGA 573
Query: 580 MVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
MVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 572 MVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 441
Score = 25.8 bits (50), Expect(2) = 2e-049
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / -3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 440 GIDKNTMFSAV 408
>gb|BF010621.1|BF010621 NXCI_087_A08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_087_A08 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 188 bits (404), Expect = 6e-047
Identities = 72/122 (59%), Positives = 89/122 (72%)
Frame = -2 / +2
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 8 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 187
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIK 455
G+KWRD+ + NPN++V MVAGPD+RD + DVRTNYNYTEPTLA NAG AAL+S+S
Sbjct: 188 GWKWRDSPRPNPNVIVXXMVAGPDKRDMFHDVRTNYNYTEPTLAXNAGXXAALVSLSGGD 367
Query: 454 TG 449
TG
Sbjct: 368 TG 373
>gb|CV032797.1|CV032797 RTNACL1_18_H11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H11_A029 3', mRNA sequence
Length = 764
Score = 177 bits (382), Expect(2) = 4e-046
Identities = 70/128 (54%), Positives = 85/128 (66%)
Frame = -2 / +3
Query: 832 PXXYXXPXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGV 653
P Y P + L Q++YI KNPL MSY VG+ N+YPK HHR ASIP NGV
Sbjct: 9 PGWYCGPTYFDRQTLRDFATTQINYILGKNPLGMSYVVGYGNRYPKHVHHRAASIPQNGV 188
Query: 652 KYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALI 473
KY C G+KWRD+ NP++L GAMV GPD+ D + D R NYN TEPT+A NAGLVAALI
Sbjct: 189 KYTCTSGFKWRDSPNPNPHVLTGAMVGGPDKFDRFNDARNNYNQTEPTIAGNAGLVAALI 368
Query: 472 SISDIKTG 449
++S+ G
Sbjct: 369 ALSNGDNG 392
Score = 27.6 bits (54), Expect(2) = 4e-046
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1 / +2
Query: 431 EHHLLCDPSNVSDTAAAAISMETI 360
E+HLL +NV AA+ SME+I
Sbjct: 413 EYHLLFSSTNVPHDAASPCSMESI 484
>gb|CV033821.1|CV033821 RTNACL1_36_G06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_G06_A029 5', mRNA sequence
Length = 711
Score = 178 bits (383), Expect(2) = 1e-045
Identities = 68/97 (70%), Positives = 81/97 (83%)
Frame = -2 / +3
Query: 739 LKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDR 560
+KMSY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+
Sbjct: 6 MKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDK 185
Query: 559 RDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 186 RDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 296
Score = 25.8 bits (50), Expect(2) = 1e-045
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 297 GIDKNTMFSAV 329
>gb|DR078575.1|DR078575 RTFEPL1_5_C10.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C10_A029 5', mRNA sequence
Length = 837
Score = 177 bits (381), Expect(2) = 2e-045
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = -2 / -3
Query: 736 KMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRR 557
KMSY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+R
Sbjct: 835 KMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKR 656
Query: 556 DGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
D + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 655 DMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 548
Score = 25.8 bits (50), Expect(2) = 2e-045
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / -3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 547 GIDKNTMFSAV 515
>gb|DR020418.1|DR020418 STRS1_36_G05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_G05_A034 5', mRNA sequence
Length = 735
Score = 172 bits (371), Expect(2) = 4e-044
Identities = 66/94 (70%), Positives = 78/94 (82%)
Frame = -2 / +3
Query: 730 SYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDG 551
SY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD
Sbjct: 3 SYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDM 182
Query: 550 YKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
+ DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 183 FHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 284
Score = 25.8 bits (50), Expect(2) = 4e-044
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 285 GIDKNTMFSAV 317
>gb|DR051556.1|DR051556 RTBOR1_30_H04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_30_H04_A029 5', mRNA sequence
Length = 591
Score = 172 bits (371), Expect(2) = 4e-044
Identities = 66/94 (70%), Positives = 78/94 (82%)
Frame = -2 / +2
Query: 730 SYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDG 551
SY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD
Sbjct: 2 SYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDM 181
Query: 550 YKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
+ DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 182 FHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 283
Score = 25.8 bits (50), Expect(2) = 4e-044
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 284 GIDKNTMFSAV 316
>gb|DR164313.1|DR164313 RTFE1_48_E03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_E03_A029 3', mRNA sequence
Length = 839
Score = 171 bits (367), Expect(2) = 2e-043
Identities = 65/93 (69%), Positives = 77/93 (82%)
Frame = -2 / +2
Query: 727 YXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGY 548
Y VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD +
Sbjct: 2 YLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMF 181
Query: 547 KDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 182 HDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 280
Score = 25.8 bits (50), Expect(2) = 2e-043
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 281 GIDKNTMFSAV 313
>gb|CF667382.1|CF667382 RTCNT1_29_H05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_H05_A029 5', mRNA sequence
Length = 772
Score = 171 bits (367), Expect(2) = 2e-043
Identities = 65/93 (69%), Positives = 77/93 (82%)
Frame = -2 / +1
Query: 727 YXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGY 548
Y VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD +
Sbjct: 1 YLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMF 180
Query: 547 KDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 181 HDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 279
Score = 25.8 bits (50), Expect(2) = 2e-043
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 280 GIDKNTMFSAV 312
>gb|BX255006.1|BX255006 BX255006 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP109B04 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 510
Score = 156 bits (335), Expect(2) = 4e-039
Identities = 60/83 (72%), Positives = 70/83 (84%)
Frame = -2 / +2
Query: 697 KRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYT 518
K HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYT
Sbjct: 2 KHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYT 181
Query: 517 EPTLAANAGLVAALISISDIKTG 449
EPTLA NAGLVAAL+S+S TG
Sbjct: 182 EPTLAGNAGLVAALVSLSGGDTG 250
Score = 25.8 bits (50), Expect(2) = 4e-039
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 251 GIDKNTMFSAV 283
>gb|BX682244.2|BX682244 BX682244 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 114A07 similar to Endoglucanase, mRNA
sequence
Length = 370
Score = 155 bits (332), Expect(2) = 1e-038
Identities = 59/80 (73%), Positives = 69/80 (86%)
Frame = -2 / +1
Query: 688 HHRGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPT 509
HHRGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPT
Sbjct: 1 HHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPT 180
Query: 508 LAANAGLVAALISISDIKTG 449
LA NAGLVAAL+S+S TG
Sbjct: 181 LAGNAGLVAALVSLSGGDTG 240
Score = 25.8 bits (50), Expect(2) = 1e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 241 GIDKNTMFSAV 273
>gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_D09_A022 5', mRNA sequence
Length = 700
Score = 159 bits (341), Expect = 3e-038
Identities = 58/98 (59%), Positives = 73/98 (74%)
Frame = -2 / +1
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 406 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 585
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNY 521
G+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNY
Sbjct: 586 GWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNY 699
>gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes Pinus pinaster STS
genomic, sequence tagged site
Length = 937
Score = 158 bits (339), Expect = 6e-038
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = -2 / +3
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKGGYKWRDTKKANPNIL 590
Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKGG+KWRD+ + NPN++
Sbjct: 684 QINYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 863
Query: 589 VGAMVAGPDRRDGYKDVRTNYNYT 518
VGAMVAGPD+RD + DVRTNYNYT
Sbjct: 864 VGAMVAGPDKRDMFHDVRTNYNYT 935
>gb|CF389328.1|CF389328 RTDR2_9_B11.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_9_B11_A021 5', mRNA
sequence
Length = 722
Score = 147 bits (316), Expect(2) = 1e-036
Identities = 57/78 (73%), Positives = 67/78 (85%)
Frame = -2 / +1
Query: 682 RGASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLA 503
RGASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA
Sbjct: 1 RGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLA 180
Query: 502 ANAGLVAALISISDIKTG 449
NAGLVAAL+S+S TG
Sbjct: 181 GNAGLVAALVSLSGGDTG 234
Score = 25.8 bits (50), Expect(2) = 1e-036
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 235 GIDKNTMFSAV 267
>gb|CV033733.1|CV033733 RTNACL1_36_G06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_G06_A029 3', mRNA sequence
Length = 822
Score = 142 bits (305), Expect(2) = 5e-035
Identities = 55/76 (72%), Positives = 65/76 (85%)
Frame = -2 / +3
Query: 676 ASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAAN 497
ASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA N
Sbjct: 3 ASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGN 182
Query: 496 AGLVAALISISDIKTG 449
AGLVAAL+S+S TG
Sbjct: 183 AGLVAALVSLSGGDTG 230
Score = 25.8 bits (50), Expect(2) = 5e-035
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 231 GIDKNTMFSAV 263
>gb|DR096912.1|DR096912 STRR1_31_E11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E11_A033 3', mRNA sequence
Length = 803
Score = 142 bits (305), Expect(2) = 5e-035
Identities = 55/76 (72%), Positives = 65/76 (85%)
Frame = -2 / +3
Query: 676 ASIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAAN 497
ASIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA N
Sbjct: 3 ASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGN 182
Query: 496 AGLVAALISISDIKTG 449
AGLVAAL+S+S TG
Sbjct: 183 AGLVAALVSLSGGDTG 230
Score = 25.8 bits (50), Expect(2) = 5e-035
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 231 GIDKNTMFSAV 263
>gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_G04 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 146 bits (314), Expect = 2e-034
Identities = 55/99 (55%), Positives = 69/99 (69%)
Frame = -2 / +2
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 167 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 346
Query: 634 GYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYT 518
G+KWRD+ + NPN +VGA VAGPD+RD + DV TNY T
Sbjct: 347 GWKWRDSPRPNPNXIVGAXVAGPDKRDMFHDVPTNYXXT 463
>gb|DR744237.1|DR744237 RTCU1_21_D02.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_D02_A029 3', mRNA sequence
Length = 830
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/75 (72%), Positives = 64/75 (85%)
Frame = -2 / +1
Query: 673 SIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANA 494
SIP N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NA
Sbjct: 1 SIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNA 180
Query: 493 GLVAALISISDIKTG 449
GLVAAL+S+S TG
Sbjct: 181 GLVAALVSLSGGDTG 225
Score = 25.8 bits (50), Expect(2) = 2e-034
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 226 GIDKNTMFSAV 258
>gb|CO361628.1|CO361628 NDL2_6_B04.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B04_A029 3', mRNA sequence
Length = 831
Score = 137 bits (293), Expect(2) = 2e-033
Identities = 52/73 (71%), Positives = 62/73 (84%)
Frame = -2 / +2
Query: 667 PHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGL 488
P N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGL
Sbjct: 2 PKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGL 181
Query: 487 VAALISISDIKTG 449
VAAL+S+S TG
Sbjct: 182 VAALVSLSGGDTG 220
Score = 25.8 bits (50), Expect(2) = 2e-033
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 221 GIDKNTMFSAV 253
>gb|CX648196.1|CX648196 COLD1_27_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_D03_A029 3', mRNA sequence
Length = 786
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 51/71 (71%), Positives = 61/71 (85%)
Frame = -2 / +1
Query: 661 NGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVA 482
N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVA
Sbjct: 1 NKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVA 180
Query: 481 ALISISDIKTG 449
AL+S+S TG
Sbjct: 181 ALVSLSGGDTG 213
Score = 25.8 bits (50), Expect(2) = 1e-032
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 214 GIDKNTMFSAV 246
>gb|BQ695579.1|BQ695579 NXPV_030_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_B08 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 320
Score = 134 bits (287), Expect(2) = 1e-032
Identities = 51/71 (71%), Positives = 61/71 (85%)
Frame = -2 / +2
Query: 661 NGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVA 482
N +KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVA
Sbjct: 5 NKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVA 184
Query: 481 ALISISDIKTG 449
AL+S+S TG
Sbjct: 185 ALVSLSGGDTG 217
Score = 25.8 bits (50), Expect(2) = 1e-032
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 218 GIDKNTMFSAV 250
>gb|AI812676.1|AI812676 17G4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 479
Score = 132 bits (283), Expect(2) = 5e-032
Identities = 50/69 (72%), Positives = 60/69 (86%)
Frame = -2 / +2
Query: 655 VKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAAL 476
+KY CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL
Sbjct: 2 IKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAAL 181
Query: 475 ISISDIKTG 449
+S+S TG
Sbjct: 182 VSLSGGDTG 208
Score = 25.8 bits (50), Expect(2) = 5e-032
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 209 GIDKNTMFSAV 241
>gb|DR096648.1|DR096648 STRR1_29_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_29_G07_A033 3', mRNA sequence
Length = 810
Score = 128 bits (275), Expect(2) = 6e-031
Identities = 49/67 (73%), Positives = 58/67 (86%)
Frame = -2 / +2
Query: 649 YGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALIS 470
Y CKGG+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S
Sbjct: 2 YSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVS 181
Query: 469 ISDIKTG 449
+S TG
Sbjct: 182 LSGGDTG 202
Score = 25.8 bits (50), Expect(2) = 6e-031
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 203 GIDKNTMFSAV 235
>gb|BQ700793.1|BQ700793 NXRV111_D08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV111_D08 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 352
Score = 68.9 bits (144), Expect(3) = 2e-030
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = -2 / +2
Query: 589 VGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTGR 446
V AMVAGPD+RD D RT NYTE TLA+NAGL+AAL+S+S +GR
Sbjct: 176 VRAMVAGPDKRDMNHDFRTXXNYTEXTLASNAGLLAALLSLSGGDSGR 319
Score = 59.3 bits (123), Expect(3) = 2e-030
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = -2 / +3
Query: 760 YIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVK 650
YI KNP+ MSY G+ + YPK HHRGASIP N +K
Sbjct: 3 YILCKNPMNMSYLEGYGSHYPKHVHHRGASIPKNKIK 113
Score = 42.8 bits (87), Expect(3) = 2e-030
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2 / +1
Query: 652 KYGCKGGYKWRDTKKANPNIL 590
KY CKGG+KWRD+ NPN++
Sbjct: 112 KYSCKGGWKWRDSPIPNPNVI 174
>gb|AW984873.1|AW984873 NXNV_119_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_119_G09 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 268
Score = 127 bits (272), Expect(2) = 1e-028
Identities = 48/66 (72%), Positives = 58/66 (87%)
Frame = -2 / +3
Query: 661 NGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVA 482
N +KY CKG +KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVA
Sbjct: 6 NKIKYSCKG*WKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVA 185
Query: 481 ALISIS 464
AL+S+S
Sbjct: 186 ALVSLS 203
Score = 18.9 bits (35), Expect(2) = 1e-028
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GID NT SA+
Sbjct: 219 GIDXNTXXSAV 251
>gb|CF667305.1|CF667305 RTCNT1_29_H05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_H05_A029 3', mRNA sequence
Length = 796
Score = 97.3 bits (206), Expect(3) = 1e-028
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = -2 / +3
Query: 601 PNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKTG 449
PN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S TG
Sbjct: 60 PNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTG 212
Score = 41.4 bits (84), Expect(3) = 1e-028
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2 / +2
Query: 655 VKYGCKGGYKWRDTKKANP 599
+KY CKGG+KWRD+ + NP
Sbjct: 5 IKYSCKGGWKWRDSPRPNP 61
Score = 25.8 bits (50), Expect(3) = 1e-028
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 213 GIDKNTMFSAV 245
>gb|CF475336.1|CF475336 RTWW2_13_F07.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_13_F07_A021 5', mRNA sequence
Length = 584
Score = 112 bits (240), Expect(2) = 1e-026
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = -2 / -3
Query: 661 NGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVA 482
NGVKY C G+KWRD+ NP++L GAMV GPD+ D + D R NYN TEPT+A NAGLVA
Sbjct: 579 NGVKYTCTSGFKWRDSPNPNPHVLTGAMVGGPDKFDRFNDARNNYNQTEPTIAGNAGLVA 400
Query: 481 ALISISDIKTG 449
ALI++S+ G
Sbjct: 399 ALIALSNGDNG 367
Score = 27.6 bits (54), Expect(2) = 1e-026
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1 / -2
Query: 431 EHHLLCDPSNVSDTAAAAISMETI 360
E+HLL +NV AA+ SME+I
Sbjct: 346 EYHLLFSSTNVPHDAASPCSMESI 275
>gb|BQ702675.1|BQ702675 NXSI_131_C04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_131_C04 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 481
Score = 113 bits (242), Expect(2) = 2e-026
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = -2 / +3
Query: 631 YKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALISISDIKT 452
+KWRD+ + NPN++VGAMVAGPD+RD + DVRTNYNYTEPTLA NAGLVAAL+S+S T
Sbjct: 3 WKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDT 182
Query: 451 G 449
G
Sbjct: 183 G 185
Score = 25.8 bits (50), Expect(2) = 2e-026
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 442 GIDKNTIFSAI 410
GIDKNT+FSA+
Sbjct: 186 GIDKNTMFSAV 218
>gb|DR179146.1|DR179146 RTMNUT1_16_F11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_F11_A029 3', mRNA sequence
Length = 884
Score = 76.2 bits (160), Expect(2) = 5e-024
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = -2 / +2
Query: 673 SIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANA 494
S+ H+ CKGG ++ +K NPN+LVGA+V GP+ RD Y D RT + +EPT NA
Sbjct: 344 SVTHHPSHITCKGGSQYFFSKSPNPNLLVGAVVGGPNTRDQYSDARTYFRQSEPTTYINA 523
Query: 493 GLVAAL 476
LV AL
Sbjct: 524 PLVGAL 541
Score = 55.1 bits (114), Expect(2) = 5e-024
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = -2 / +2
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIP 665
Q+DYI NP+K+SY VG+ + +PK HHRG+S+P
Sbjct: 239 QVDYILGDNPMKLSYMVGYGSGFPKYIHHRGSSLP 343
>gb|DR179224.1|DR179224 RTMNUT1_16_F11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_F11_A029 5', mRNA sequence
Length = 846
Score = 76.2 bits (160), Expect(2) = 5e-024
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = -2 / +1
Query: 673 SIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANA 494
S+ H+ CKGG ++ +K NPN+LVGA+V GP+ RD Y D RT + +EPT NA
Sbjct: 430 SVTHHPSHITCKGGSQYFFSKSPNPNLLVGAVVGGPNTRDQYSDARTYFRQSEPTTYINA 609
Query: 493 GLVAAL 476
LV AL
Sbjct: 610 PLVGAL 627
Score = 55.1 bits (114), Expect(2) = 5e-024
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = -2 / +1
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIP 665
Q+DYI NP+K+SY VG+ + +PK HHRG+S+P
Sbjct: 325 QVDYILGDNPMKLSYMVGYGSGFPKYIHHRGSSLP 429
>gb|DR013159.1|DR013159 HEAT1_17_H11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_H11_A029 3', mRNA sequence
Length = 827
Score = 76.2 bits (160), Expect(2) = 5e-024
Identities = 32/66 (48%), Positives = 42/66 (63%)
Frame = -2 / -3
Query: 673 SIPHNGVKYGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANA 494
S+ H+ CKGG ++ +K NPN+LVGA+V GP+ RD Y D RT + +EPT NA
Sbjct: 420 SVTHHPSHITCKGGSQYFFSKSPNPNLLVGAVVGGPNTRDQYSDARTYFRQSEPTTYINA 241
Query: 493 GLVAAL 476
LV AL
Sbjct: 240 PLVGAL 223
Score = 55.1 bits (114), Expect(2) = 5e-024
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = -2 / -3
Query: 769 QLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIP 665
Q+DYI NP+K+SY VG+ + +PK HHRG+S+P
Sbjct: 525 QVDYILGDNPMKLSYMVGYGSGFPKYIHHRGSSLP 421
>gb|BQ699374.1|BQ699374 NXRV126_H08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV126_H08 5' similar to Arabidopsis thaliana
sequence At1g19940 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 548
Score = 66.6 bits (139), Expect(2) = 5e-024
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = -2 / +2
Query: 805 YTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIP 665
+T L K Q+DYI +NP++MSY VGF N YPK HH GASIP
Sbjct: 185 FTPQDLRKFAFSQVDYILGENPMRMSYLVGFGNNYPKHVHHXGASIP 325
Score = 64.8 bits (135), Expect(2) = 5e-024
Identities = 25/61 (40%), Positives = 35/61 (57%)
Frame = -2 / +2
Query: 649 YGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAALIS 470
Y C GY W ++K NPN+ GA+V GP + D + D+R+N EP+ +A LV L
Sbjct: 344 YDCNSGYVWFNSKSPNPNVATGALVGGPFQNDSFIDIRSNPMQNEPSTYNSAALVGLLSG 523
Query: 469 I 467
I
Sbjct: 524 I 526
>gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_G11_A022 5', mRNA sequence
Length = 699
Score = 111 bits (237), Expect = 7e-024
Identities = 39/75 (52%), Positives = 52/75 (69%)
Frame = -2 / +2
Query: 814 PXXYTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIPHNGVKYGCKG 635
P ++ L Q++YI KNP+KMSY VG+ + YPK HHRGASIP N +KY CKG
Sbjct: 473 PNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKG 652
Query: 634 GYKWRDTKKANPNIL 590
G+KWRD+ + NPN++
Sbjct: 653 GWKWRDSPRPNPNVI 697
>gb|DR167591.1|DR167591 RTPHOS1_19_F11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_F11_A029 5', mRNA sequence
Length = 829
Score = 67.0 bits (140), Expect(2) = 7e-024
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = -2 / -3
Query: 805 YTIXVLXKXXXXQLDYIXXKNPLKMSYXVGFXNKYPKRPHHRGASIP 665
+T L K Q+DYI +NP++MSY VGF + YPK HHRGASIP
Sbjct: 599 FTPQDLRKFAFSQVDYILGENPMRMSYLVGFGDNYPKHVHHRGASIP 459
Score = 63.8 bits (133), Expect(2) = 7e-024
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = -2 / -3
Query: 649 YGCKGGYKWRDTKKANPNILVGAMVAGPDRRDGYKDVRTNYNYTEPTLAANAGLVAAL 476
Y C GY W ++K NPN+ GA+V GP + D + D+R+N EP+ +A LV L
Sbjct: 440 YDCNSGYVWFNSKSPNPNVATGALVGGPFQNDSFIDIRSNPMQNEPSTYNSAALVGLL 267
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 387,921,160
Number of Sequences: 355925
Number of extensions: 5189759
Number of successful extensions: 40104
Number of sequences better than 1.0e-020: 69
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12347140705
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)