TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738931.2.11
(609 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX248801.1|BX248801 BX248801 Pinus pinaster differenciat... 200 8e-051
gb|BX255474.1|BX255474 BX255474 Pinus pinaster differenciat... 200 8e-051
gb|BX682977.1|BX682977 BX682977 Pinus pinaster differenciat... 200 8e-051
gb|DN463160.1|DN463160 EST958959 Sequencing ESTs from loblo... 200 8e-051
gb|DR014632.1|DR014632 HEAT1_50_D12.g1_A029 Root at 37 C fo... 200 8e-051
gb|AW754514.1|AW754514 PC03A08 Pine TriplEx pollen cone lib... 199 1e-050
gb|BE496396.1|BE496396 NXCI_017_D02_F NXCI (Nsf Xylem Compr... 199 1e-050
gb|CF472413.1|CF472413 RTDS1_9_D01.g1_A015 Drought-stressed... 199 1e-050
gb|CV136524.1|CV136524 EST847733 Sequencing ESTs from loblo... 199 1e-050
gb|DR058464.1|DR058464 RTNIT1_12_A03.b1_A029 Roots minus ni... 199 1e-050
gb|DR058537.1|DR058537 RTNIT1_12_A03.g1_A029 Roots minus ni... 199 1e-050
gb|DR060182.1|DR060182 RTNIT1_26_F03.b1_A029 Roots minus ni... 199 1e-050
gb|DR060260.1|DR060260 RTNIT1_26_F03.g1_A029 Roots minus ni... 199 1e-050
gb|DR091869.1|DR091869 RTAL1_24_B09.g1_A029 Roots plus adde... 199 1e-050
gb|DR096237.1|DR096237 STRR1_26_E02.g1_A033 Stem Response R... 199 1e-050
gb|DR112225.1|DR112225 RTS1_26_E09.g1_A029 Roots minus sulf... 199 1e-050
gb|DT626264.1|DT626264 EST1158188 Sequencing ESTs from lobl... 199 1e-050
gb|DN462478.1|DN462478 EST958277 Sequencing ESTs from loblo... 199 2e-050
gb|DT626951.1|DT626951 EST1160027 Sequencing ESTs from lobl... 199 2e-050
gb|BX681005.1|BX681005 BX681005 RS Pinus pinaster cDNA clon... 198 4e-050
gb|DR024781.1|DR024781 STRS1_67_A05.g1_A034 Shoot tip pitch... 197 7e-050
gb|AL750025.1|AL750025 AL750025 AS Pinus pinaster cDNA clon... 196 1e-049
gb|BX254425.1|BX254425 BX254425 Pinus pinaster differenciat... 196 1e-049
gb|AI812340.1|AI812340 1B8 Pine Lambda Zap Xylem library Pi... 190 6e-048
gb|CO174718.1|CO174718 NDL1_45_G04.g1_A029 Needles control ... 190 6e-048
gb|BG275938.1|BG275938 NXSI_149_G06_F NXSI (Nsf Xylem Side ... 188 4e-047
gb|DR024706.1|DR024706 STRS1_67_A05.b1_A034 Shoot tip pitch... 185 2e-046
gb|BF186007.1|BF186007 NXCI_132_A08_F NXCI (Nsf Xylem Compr... 174 6e-043
gb|CO172573.1|CO172573 NDL1_30_C03.g1_A029 Needles control ... 146 9e-043
gb|AW981841.1|AW981841 PC19D01 Pine TriplEx pollen cone lib... 161 2e-041
gb|BX252371.1|BX252371 BX252371 Pinus pinaster differenciat... 167 5e-041
gb|CF395700.1|CF395700 RTDS2_16_C07.g1_A021 Drought-stresse... 160 6e-039
gb|AW225661.1|AW225661 ST70A05 Pine TriplEx shoot tip libra... 159 2e-038
gb|DR014550.1|DR014550 HEAT1_50_D12.b1_A029 Root at 37 C fo... 153 9e-037
gb|BX682787.1|BX682787 BX682787 Pinus pinaster differenciat... 134 4e-031
gb|BF778182.1|BF778182 NXSI_080_B02_F NXSI (Nsf Xylem Side ... 134 6e-031
gb|AW755158.1|AW755158 PC11F09 Pine TriplEx pollen cone lib... 133 8e-031
gb|CF472338.1|CF472338 RTDS1_9_D01.b1_A015 Drought-stressed... 128 3e-029
gb|BE643878.1|BE643878 NXCI_048_E02_F NXCI (Nsf Xylem Compr... 127 9e-029
gb|CO174639.1|CO174639 NDL1_45_G04.b1_A029 Needles control ... 124 4e-028
gb|BF517995.1|BF517995 NXSI_032_F08_F NXSI (Nsf Xylem Side ... 119 1e-026
gb|AW755231.1|AW755231 PC12F10 Pine TriplEx pollen cone lib... 94 2e-025
gb|AL749630.1|AL749630 AL749630 AN Pinus pinaster cDNA clon... 116 2e-025
gb|BM492255.1|BM492255 NXRV_022_G09_F NXRV (Nsf Xylem Root ... 114 5e-025
gb|BG275981.1|BG275981 NXSI_147_C11_F NXSI (Nsf Xylem Side ... 102 2e-021
gb|CO172488.1|CO172488 NDL1_30_C03.b1_A029 Needles control ... 101 4e-021
gb|DR745593.1|DR745593 RTCU1_30_F08.g1_A029 Roots plus adde... 101 4e-021
>gb|BX248801.1|BX248801 BX248801 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP001C02 similar to RIBOSOMAL PROTEIN L31,
mRNA sequence
Length = 695
Score = 200 bits (431), Expect = 8e-051
Identities = 82/117 (70%), Positives = 94/117 (80%)
Frame = +2 / +2
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G +R++EVVTREYTINLH+RLHGCTFKK AP A+KEIRKFAQKAMGTTDVR+DVKLNK +
Sbjct: 32 GKTRRDEVVTREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAV 211
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL GLGTK+++E D*
Sbjct: 212 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPLEGLSGLGTKIIEEED* 382
Score = 101 bits (216), Expect = 4e-021
Identities = 47/58 (81%), Positives = 48/58 (82%)
Frame = -1 / -3
Query: 249 LLSFTSILTSVVPMAFCANFLISLMALGAFFLNVQPWRRLWRLMVYSLVTTSSFLDAP 76
LLSFTS LTSVVP+AF ANFLISL A GA FLNVQPWRRL RLMVYSLVTTSS P
Sbjct: 204 LLSFTSSLTSVVPIAFWANFLISLTAFGAIFLNVQPWRRL*RLMVYSLVTTSSLRVLP 31
>gb|BX255474.1|BX255474 BX255474 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP006B12 similar to 60S RIBOSOMAL PROTEIN
L31, mRNA sequence
Length = 648
Score = 200 bits (431), Expect = 8e-051
Identities = 82/117 (70%), Positives = 94/117 (80%)
Frame = +2 / +1
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G +R++EVVTREYTINLH+RLHGCTFKK AP A+KEIRKFAQKAMGTTDVR+DVKLNK +
Sbjct: 58 GKTRRDEVVTREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAV 237
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL GLGTK+++E D*
Sbjct: 238 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGLGTKIIEEED* 408
Score = 101 bits (216), Expect = 4e-021
Identities = 47/58 (81%), Positives = 48/58 (82%)
Frame = -1 / -2
Query: 249 LLSFTSILTSVVPMAFCANFLISLMALGAFFLNVQPWRRLWRLMVYSLVTTSSFLDAP 76
LLSFTS LTSVVP+AF ANFLISL A GA FLNVQPWRRL RLMVYSLVTTSS P
Sbjct: 230 LLSFTSSLTSVVPIAFWANFLISLTAFGAIFLNVQPWRRL*RLMVYSLVTTSSLRVLP 57
>gb|BX682977.1|BX682977 BX682977 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126C12 similar to 60S ribosomal protein L31,
mRNA sequence
Length = 665
Score = 200 bits (431), Expect = 8e-051
Identities = 82/117 (70%), Positives = 94/117 (80%)
Frame = +2 / +3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G +R++EVVTREYTINLH+RLHGCTFKK AP A+KEIRKFAQKAMGTTDVR+DVKLNK +
Sbjct: 6 GKTRRDEVVTREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAV 185
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL GLGTK+++E D*
Sbjct: 186 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPLEGLSGLGTKIIEEED* 356
Score = 101 bits (216), Expect = 4e-021
Identities = 47/58 (81%), Positives = 48/58 (82%)
Frame = -1 / -2
Query: 249 LLSFTSILTSVVPMAFCANFLISLMALGAFFLNVQPWRRLWRLMVYSLVTTSSFLDAP 76
LLSFTS LTSVVP+AF ANFLISL A GA FLNVQPWRRL RLMVYSLVTTSS P
Sbjct: 178 LLSFTSSLTSVVPIAFWANFLISLTAFGAIFLNVQPWRRL*RLMVYSLVTTSSLRVLP 5
>gb|DN463160.1|DN463160 EST958959 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIV35 5' end, mRNA sequence
Length = 738
Score = 200 bits (431), Expect = 8e-051
Identities = 82/117 (70%), Positives = 94/117 (80%)
Frame = +2 / +3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G +R++EVVTREYTINLH+RLHGCTFKK AP A+KEIRKFAQKAMGTTDVR+DVKLNK +
Sbjct: 66 GKTRRDEVVTREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAV 245
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL GLGTK+++E D*
Sbjct: 246 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGLGTKIIEEED* 416
Score = 101 bits (216), Expect = 4e-021
Identities = 47/58 (81%), Positives = 48/58 (82%)
Frame = -1 / -3
Query: 249 LLSFTSILTSVVPMAFCANFLISLMALGAFFLNVQPWRRLWRLMVYSLVTTSSFLDAP 76
LLSFTS LTSVVP+AF ANFLISL A GA FLNVQPWRRL RLMVYSLVTTSS P
Sbjct: 238 LLSFTSSLTSVVPIAFWANFLISLTAFGAIFLNVQPWRRL*RLMVYSLVTTSSLRVLP 65
>gb|DR014632.1|DR014632 HEAT1_50_D12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_D12_A029 5', mRNA sequence
Length = 846
Score = 200 bits (431), Expect = 8e-051
Identities = 82/117 (70%), Positives = 94/117 (80%)
Frame = +2 / +1
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G +R++EVVTREYTINLH+RLHGCTFKK AP A+KEIRKFAQKAMGTTDVR+DVKLNK +
Sbjct: 55 GKTRRDEVVTREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAV 234
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL GLGTK+++E D*
Sbjct: 235 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGLGTKIIEEED* 405
Score = 101 bits (216), Expect = 4e-021
Identities = 47/58 (81%), Positives = 48/58 (82%)
Frame = -1 / -2
Query: 249 LLSFTSILTSVVPMAFCANFLISLMALGAFFLNVQPWRRLWRLMVYSLVTTSSFLDAP 76
LLSFTS LTSVVP+AF ANFLISL A GA FLNVQPWRRL RLMVYSLVTTSS P
Sbjct: 227 LLSFTSSLTSVVPIAFWANFLISLTAFGAIFLNVQPWRRL*RLMVYSLVTTSSLRVLP 54
>gb|AW754514.1|AW754514 PC03A08 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC03A08, mRNA sequence
Length = 498
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / +1
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 106 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 285
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 286 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 456
>gb|BE496396.1|BE496396 NXCI_017_D02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_D02 5' similar to Arabidopsis
thaliana sequence At2g19740 60S ribosomal protein L31
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 495
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / +3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 45 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 224
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 225 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 395
>gb|CF472413.1|CF472413 RTDS1_9_D01.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_9_D01_A015 5', mRNA sequence
Length = 650
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / +2
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 2 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 181
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 182 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 352
>gb|CV136524.1|CV136524 EST847733 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAC80 5' end, mRNA sequence
Length = 779
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / +2
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 53 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 232
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 233 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 403
>gb|DR058464.1|DR058464 RTNIT1_12_A03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_12_A03_A029 3', mRNA sequence
Length = 705
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / -3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 646 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 467
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 466 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 296
>gb|DR058537.1|DR058537 RTNIT1_12_A03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_12_A03_A029 5', mRNA sequence
Length = 691
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / -3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 626 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 447
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 446 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 276
>gb|DR060182.1|DR060182 RTNIT1_26_F03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_F03_A029 3', mRNA sequence
Length = 712
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / +2
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 59 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 238
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 239 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 409
>gb|DR060260.1|DR060260 RTNIT1_26_F03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_F03_A029 5', mRNA sequence
Length = 698
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / +3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 42 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 221
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 222 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 392
>gb|DR091869.1|DR091869 RTAL1_24_B09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_B09_A029 5', mRNA sequence
Length = 756
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / +3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 42 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 221
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 222 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 392
>gb|DR096237.1|DR096237 STRR1_26_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_26_E02_A033 5', mRNA sequence
Length = 780
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / +1
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 328 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 507
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 508 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 678
>gb|DR112225.1|DR112225 RTS1_26_E09.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_26_E09_A029 5', mRNA sequence
Length = 446
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / +3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 3 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 182
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 183 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 353
>gb|DT626264.1|DT626264 EST1158188 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA889 5' end, mRNA sequence
Length = 780
Score = 199 bits (430), Expect = 1e-050
Identities = 82/117 (70%), Positives = 93/117 (79%)
Frame = +2 / +2
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 53 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 232
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 233 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 403
>gb|DN462478.1|DN462478 EST958277 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIM84 5' end, mRNA sequence
Length = 776
Score = 199 bits (428), Expect = 2e-050
Identities = 82/131 (62%), Positives = 99/131 (75%)
Frame = +2 / +2
Query: 44 RSRGDMSQGKGGASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTD 223
R+R + + G SR+ +VVTREYTINLH+RLHGCTFKK AP A+KEIR FAQKAMGT+D
Sbjct: 29 RNRAAAAMVEKGKSRRNDVVTREYTINLHRRLHGCTFKKMAPKAVKEIRNFAQKAMGTSD 208
Query: 224 VRIDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGT 403
VR+DVKLNK +WS GI NDEEDAKEELYS+VTVAE+P EGL GLGT
Sbjct: 209 VRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLTGLGT 388
Query: 404 KVVDETD*AVA 436
K+++E D* ++
Sbjct: 389 KIIEEED*CIS 421
>gb|DT626951.1|DT626951 EST1160027 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAT19 5' end, mRNA sequence
Length = 778
Score = 199 bits (428), Expect = 2e-050
Identities = 82/131 (62%), Positives = 99/131 (75%)
Frame = +2 / +2
Query: 44 RSRGDMSQGKGGASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTD 223
R+R + + G SR+ +VVTREYTINLH+RLHGCTFKK AP A+KEIR FAQKAMGT+D
Sbjct: 29 RNRAAAAMVEKGKSRRNDVVTREYTINLHRRLHGCTFKKMAPKAVKEIRNFAQKAMGTSD 208
Query: 224 VRIDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGT 403
VR+DVKLNK +WS GI NDEEDAKEELYS+VTVAE+P EGL GLGT
Sbjct: 209 VRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLTGLGT 388
Query: 404 KVVDETD*AVA 436
K+++E D* ++
Sbjct: 389 KIIEEED*CIS 421
>gb|BX681005.1|BX681005 BX681005 RS Pinus pinaster cDNA clone RS51H06, mRNA sequence
Length = 628
Score = 198 bits (426), Expect = 4e-050
Identities = 82/130 (63%), Positives = 96/130 (73%)
Frame = +2 / +1
Query: 38 RTRSRGDMSQGKGGASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGT 217
R + G G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKF+QKAMGT
Sbjct: 22 RLEAERSSDDGGKGKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFSQKAMGT 201
Query: 218 TDVRIDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGL 397
DVR+DVKLNK +WS GI NDEEDAK+ELYS+VTVAE+P EGL G+
Sbjct: 202 ADVRLDVKLNKAVWSRGIRGVPRRMRVRISRKRNDEEDAKQELYSIVTVAEVPPEGLSGV 381
Query: 398 GTKVVDETD* 427
GTK+++E D*
Sbjct: 382 GTKIIEEED* 411
>gb|DR024781.1|DR024781 STRS1_67_A05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_A05_A034 5', mRNA sequence
Length = 378
Score = 197 bits (424), Expect = 7e-050
Identities = 80/114 (70%), Positives = 91/114 (79%)
Frame = +2 / +1
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 34 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 213
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDE 418
WS GI NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E
Sbjct: 214 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEE 375
>gb|AL750025.1|AL750025 AL750025 AS Pinus pinaster cDNA clone AS03H12 similar to RP L31,
mRNA sequence
Length = 502
Score = 196 bits (422), Expect = 1e-049
Identities = 80/117 (68%), Positives = 93/117 (79%)
Frame = +2 / +2
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKF+QKAMGT DVR+DVKLNK +
Sbjct: 44 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFSQKAMGTADVRLDVKLNKAV 223
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAK+ELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 224 WSRGIRGVPRRMRVRISRKRNDEEDAKQELYSIVTVAEVPPEGLSGVGTKIIEEED* 394
>gb|BX254425.1|BX254425 BX254425 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP098D12 similar to 60S RIBOSOMAL PROTEIN
L31, mRNA sequence
Length = 656
Score = 196 bits (422), Expect = 1e-049
Identities = 80/117 (68%), Positives = 93/117 (79%)
Frame = +2 / +3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKF+QKAMGT DVR+DVKLNK +
Sbjct: 66 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFSQKAMGTADVRLDVKLNKAV 245
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAK+ELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 246 WSRGIRGVPRRMRVRISRKRNDEEDAKQELYSIVTVAEVPPEGLSGVGTKIIEEED* 416
>gb|AI812340.1|AI812340 1B8 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 519
Score = 190 bits (410), Expect = 6e-048
Identities = 79/111 (71%), Positives = 87/111 (78%)
Frame = +2 / +1
Query: 95 EVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHIWSSGIX 274
EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR DVKLNK +WS GI
Sbjct: 85 EVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRFDVKLNKAVWSRGIR 264
Query: 275 XXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 265 SVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 417
>gb|CO174718.1|CO174718 NDL1_45_G04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_45_G04_A029 5', mRNA sequence
Length = 652
Score = 190 bits (410), Expect = 6e-048
Identities = 79/117 (67%), Positives = 90/117 (76%)
Frame = +2 / +1
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR +EVVTREYTINLHKRLHGCTFKK AP A+KEI KFAQKAMGT DVR+DVKLNK +
Sbjct: 28 GKSRMDEVVTREYTINLHKRLHGCTFKKMAPKAVKEITKFAQKAMGTADVRLDVKLNKAV 207
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI ND+EDAKEELYS+VTVAE+P E L G+GTK+++E D*
Sbjct: 208 WSRGIRSVPRRMRVRISRKRNDQEDAKEELYSIVTVAEVPPEWLSGIGTKIIEEED* 378
>gb|BG275938.1|BG275938 NXSI_149_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_149_G06 5' similar to Arabidopsis thaliana
sequence At2g19740 60S ribosomal protein L31 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 457
Score = 188 bits (404), Expect = 4e-047
Identities = 79/117 (67%), Positives = 89/117 (76%)
Frame = +2 / +2
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 65 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 244
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
WS GI NDEEDAKEELYS+ VAE+P EGL G TK+++ D*
Sbjct: 245 WSRGIXSVPRRMRVRISRKRNDEEDAKEELYSIXXVAEVPPEGLSGXXTKIIEXED* 415
>gb|DR024706.1|DR024706 STRS1_67_A05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_A05_A034 3', mRNA sequence
Length = 607
Score = 185 bits (399), Expect = 2e-046
Identities = 76/108 (70%), Positives = 85/108 (78%)
Frame = +2 / +1
Query: 104 TREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHIWSSGIXXXX 283
TREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +WS GI
Sbjct: 1 TREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAVWSRGIRSVP 180
Query: 284 XXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 181 RRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 324
>gb|BF186007.1|BF186007 NXCI_132_A08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_132_A08 5' similar to Arabidopsis
thaliana sequence At2g19740 60S ribosomal protein L31
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 361
Score = 174 bits (374), Expect = 6e-043
Identities = 73/104 (70%), Positives = 80/104 (76%)
Frame = +2 / +3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 42 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 221
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGL 388
WS GI NDEEDAKEELYS+VTVAE+P L
Sbjct: 222 WSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPXXL 353
>gb|CO172573.1|CO172573 NDL1_30_C03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_30_C03_A029 5', mRNA sequence
Length = 745
Score = 146 bits (314), Expect(2) = 9e-043
Identities = 61/96 (63%), Positives = 72/96 (75%)
Frame = +2 / +3
Query: 149 TFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEE 328
TFKK AP A+KEIR FAQKAMGT+DVR+DVKLNK +WS GI NDEE
Sbjct: 300 TFKKMAPKAVKEIRNFAQKAMGTSDVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEE 479
Query: 329 DAKEELYSLVTVAEIPAEGLKGLGTKVVDETD*AVA 436
DAKEELYS+VTVAE+P EGL GLGTK+++E D* ++
Sbjct: 480 DAKEELYSIVTVAEVPPEGLTGLGTKIIEEED*CIS 587
Score = 48.7 bits (100), Expect(2) = 9e-043
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2 / +1
Query: 77 GASRKEEVVTREYTINLHKRLHG 145
G SR+ +VVTREYTINLH+RLHG
Sbjct: 16 GKSRRNDVVTREYTINLHRRLHG 84
>gb|AW981841.1|AW981841 PC19D01 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC19D01, mRNA sequence
Length = 471
Score = 161 bits (346), Expect(2) = 2e-041
Identities = 67/94 (71%), Positives = 73/94 (77%)
Frame = +2 / +2
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 83 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 262
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLV 358
WS GI NDEEDAKEELYS+V
Sbjct: 263 WSRGIRSVSRRMRVRISRKPNDEEDAKEELYSIV 364
Score = 28.1 bits (55), Expect(2) = 2e-041
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2 / +1
Query: 359 TVAEIPAEGLKGLG 400
TVAE+P EGL G+G
Sbjct: 364 TVAEVPPEGLXGIG 405
>gb|BX252371.1|BX252371 BX252371 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP063E06 similar to 60S RIBOSOMAL PROTEIN
L31, mRNA sequence
Length = 602
Score = 167 bits (360), Expect = 5e-041
Identities = 68/102 (66%), Positives = 79/102 (77%)
Frame = +2 / +3
Query: 122 NLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHIWSSGIXXXXXXXXXX 301
NLHKRLHGCTFKK AP A+KEIRKF+QKAMGT DVR+DVKLNK +WS GI
Sbjct: 3 NLHKRLHGCTFKKMAPKAVKEIRKFSQKAMGTADVRLDVKLNKAVWSRGIRGVPRRMRVR 182
Query: 302 XXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
NDEEDAK+ELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 183 ISRKRNDEEDAKQELYSIVTVAEVPPEGLSGVGTKIIEEED* 308
>gb|CF395700.1|CF395700 RTDS2_16_C07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_C07_A021 5', mRNA sequence
Length = 581
Score = 160 bits (345), Expect = 6e-039
Identities = 66/98 (67%), Positives = 75/98 (76%)
Frame = +2 / +2
Query: 134 RLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHIWSSGIXXXXXXXXXXXXXX 313
RLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +WS GI
Sbjct: 2 RLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAVWSRGIRSVPRRMRVRISRK 181
Query: 314 XNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
NDEEDAKEELYS+VTVAE+P EGL G+GTK+++E D*
Sbjct: 182 RNDEEDAKEELYSIVTVAEVPPEGLSGIGTKIIEEED* 295
>gb|AW225661.1|AW225661 ST70A05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST70A05, mRNA sequence
Length = 342
Score = 159 bits (341), Expect = 2e-038
Identities = 66/100 (66%), Positives = 73/100 (73%)
Frame = +2 / +3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMGT DVR+DVKLNK +
Sbjct: 39 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMGTADVRLDVKLNKAV 218
Query: 257 WSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIP 376
WS GI NDEEDA ELYS+ V +P
Sbjct: 219 WSRGIRSVPRRMRVRISRKRNDEEDAXXELYSIXXVXXVP 338
>gb|DR014550.1|DR014550 HEAT1_50_D12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_D12_A029 3', mRNA sequence
Length = 798
Score = 153 bits (329), Expect = 9e-037
Identities = 64/94 (68%), Positives = 72/94 (76%)
Frame = +2 / +1
Query: 146 CTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDE 325
CTFKK AP A+KEIRKFAQKAMGTTDVR+DVKLNK +WS GI NDE
Sbjct: 1 CTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDE 180
Query: 326 EDAKEELYSLVTVAEIPAEGLKGLGTKVVDETD* 427
EDAKEELYS+VTVAE+P EGL GLGTK+++E D*
Sbjct: 181 EDAKEELYSIVTVAEVPPEGLSGLGTKIIEEED* 282
>gb|BX682787.1|BX682787 BX682787 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 121G09_1, mRNA sequence
Length = 262
Score = 134 bits (288), Expect = 4e-031
Identities = 53/65 (81%), Positives = 59/65 (90%)
Frame = +2 / +3
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKF+QKAMGT DVR+DVKLNK +
Sbjct: 66 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFSQKAMGTADVRLDVKLNKAV 245
Query: 257 WSSGI 271
WS GI
Sbjct: 246 WSRGI 260
>gb|BF778182.1|BF778182 NXSI_080_B02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_080_B02 5' similar to Arabidopsis thaliana
sequence At2g19740 60S ribosomal protein L31 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 285
Score = 134 bits (287), Expect = 6e-031
Identities = 53/65 (81%), Positives = 58/65 (89%)
Frame = +2 / +1
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQK MGT DVR+DVKLNK +
Sbjct: 40 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKXMGTADVRLDVKLNKAV 219
Query: 257 WSSGI 271
WS GI
Sbjct: 220 WSRGI 234
>gb|AW755158.1|AW755158 PC11F09 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC11F09, mRNA sequence
Length = 470
Score = 133 bits (286), Expect = 8e-031
Identities = 59/108 (54%), Positives = 70/108 (64%)
Frame = +2 / +2
Query: 38 RTRSRGDMSQGKGGASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGT 217
R R+ + K G S EVVTREYT+NLHKRLH FKK+AP AIKEIRKFA+K MGT
Sbjct: 32 R*RAMAKSAGEKKGKSAINEVVTREYTVNLHKRLHSVGFKKRAPRAIKEIRKFAEKQMGT 211
Query: 218 TDVRIDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVT 361
DVRID +LNK +WS GI ND+ED+ +LY+LVT
Sbjct: 212 PDVRIDTRLNKQLWSKGIRNVPFRVRVRLSRRRNDDEDSANKLYTLVT 355
>gb|CF472338.1|CF472338 RTDS1_9_D01.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_9_D01_A015 3', mRNA sequence
Length = 528
Score = 128 bits (275), Expect = 3e-029
Identities = 54/83 (65%), Positives = 62/83 (74%)
Frame = +2 / +3
Query: 179 KEIRKFAQKAMGTTDVRIDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLV 358
KEIRKFAQKAMGT DVR+DVKLNK +WS GI NDEEDAKEELYS+V
Sbjct: 3 KEIRKFAQKAMGTADVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIV 182
Query: 359 TVAEIPAEGLKGLGTKVVDETD* 427
TVAE+P EGL G+GTK+++E D*
Sbjct: 183 TVAEVPPEGLSGIGTKIIEEED* 251
>gb|BE643878.1|BE643878 NXCI_048_E02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_048_E02 5' similar to Arabidopsis
thaliana sequence At2g19740 60S ribosomal protein L31
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 238
Score = 127 bits (271), Expect = 9e-029
Identities = 50/65 (76%), Positives = 55/65 (84%)
Frame = +2 / +2
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHI 256
G SR++EVVTREYTINLHKRLHGCTFKK AP A+KEIRKFAQ MG DV +DVKLNK +
Sbjct: 44 GKSRRDEVVTREYTINLHKRLHGCTFKKMAPKAVKEIRKFAQXXMGXADVXLDVKLNKXV 223
Query: 257 WSSGI 271
WS GI
Sbjct: 224 WSRGI 238
>gb|CO174639.1|CO174639 NDL1_45_G04.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_45_G04_A029 3', mRNA sequence
Length = 526
Score = 124 bits (266), Expect = 4e-028
Identities = 52/84 (61%), Positives = 61/84 (72%)
Frame = +2 / +1
Query: 176 IKEIRKFAQKAMGTTDVRIDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSL 355
+KEIRKFAQK MGT DVR+DVKLNK +WS GI NDEE AKEELYS+
Sbjct: 1 VKEIRKFAQKPMGTADVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEHAKEELYSI 180
Query: 356 VTVAEIPAEGLKGLGTKVVDETD* 427
VTVAE+P EGL G+GTK+++E D*
Sbjct: 181 VTVAEVPPEGLSGIGTKIIEEED* 252
>gb|BF517995.1|BF517995 NXSI_032_F08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_032_F08 5' similar to Arabidopsis thaliana
sequence At2g19740 60S ribosomal protein L31 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 264
Score = 119 bits (255), Expect = 1e-026
Identities = 47/73 (64%), Positives = 57/73 (78%)
Frame = +2 / +1
Query: 44 RSRGDMSQGKGGASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTD 223
R+R + + G SR+ +VVTREYTINLH+RLHGCTFKK AP A+KE FA K MGT+D
Sbjct: 46 RNRAAAAMVEKGKSRRNDVVTREYTINLHRRLHGCTFKKMAPKAVKEXXNFAXKXMGTSD 225
Query: 224 VRIDVKLNKHIWS 262
VR+DVKLNK +WS
Sbjct: 226 VRLDVKLNKXVWS 264
>gb|AW755231.1|AW755231 PC12F10 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC12F10, mRNA sequence
Length = 371
Score = 93.6 bits (198), Expect(2) = 2e-025
Identities = 37/46 (80%), Positives = 40/46 (86%)
Frame = +2 / +1
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMG 214
G SR++EV EYTINLHKRLHGCTFKK AP A+KEIRKFAQKAMG
Sbjct: 124 GKSRRDEVXXXEYTINLHKRLHGCTFKKMAPKAVKEIRKFAQKAMG 261
Score = 41.8 bits (85), Expect(2) = 2e-025
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2 / +2
Query: 200 QKAMGTTDVRIDVKLNKHIWSSGI 271
++ GT DVR+DVKLNK +WS GI
Sbjct: 248 RRLWGTADVRLDVKLNKAVWSXGI 319
>gb|AL749630.1|AL749630 AL749630 AN Pinus pinaster cDNA clone AN03H12 similar to RP L31,
mRNA sequence
Length = 204
Score = 116 bits (247), Expect = 2e-025
Identities = 45/54 (83%), Positives = 49/54 (90%)
Frame = +2 / +2
Query: 110 EYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHIWSSGI 271
EYTINLHKRLHGCTFKK AP A+KEIRKF+QKAMGT DVR+DVKLNK +WS GI
Sbjct: 2 EYTINLHKRLHGCTFKKMAPKAVKEIRKFSQKAMGTADVRLDVKLNKAVWSRGI 163
>gb|BM492255.1|BM492255 NXRV_022_G09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_022_G09 5' similar to Arabidopsis thaliana
sequence At2g19740 60S ribosomal protein L31 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 223
Score = 114 bits (244), Expect = 5e-025
Identities = 45/55 (81%), Positives = 51/55 (92%)
Frame = +2 / +2
Query: 77 GASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVK 241
G +R++EVVTREYTINLH+RLHGCTFKK AP A+KEIRKFAQ AMGTTDVR+DVK
Sbjct: 53 GKTRRDEVVTREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQXAMGTTDVRLDVK 217
>gb|BG275981.1|BG275981 NXSI_147_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_147_C11 5' similar to Arabidopsis thaliana
sequence At2g19740 60S ribosomal protein L31 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 227
Score = 102 bits (218), Expect = 2e-021
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +2 / +2
Query: 44 RSRGDMSQGKGGASRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTD 223
R+R + + G SR+ +VVTREYTINLH+RLHGCTFKK AP A+KE FAQ MGT+D
Sbjct: 32 RNRAAAAMVEKGKSRRNDVVTREYTINLHRRLHGCTFKKMAPKAVKEXXNFAQXXMGTSD 211
Query: 224 VRIDV 238
VR+DV
Sbjct: 212 VRLDV 226
>gb|CO172488.1|CO172488 NDL1_30_C03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_30_C03_A029 3', mRNA sequence
Length = 746
Score = 101 bits (216), Expect = 4e-021
Identities = 42/72 (58%), Positives = 51/72 (70%)
Frame = +2 / +1
Query: 221 DVRIDVKLNKHIWSSGIXXXXXXXXXXXXXXXNDEEDAKEELYSLVTVAEIPAEGLKGLG 400
DVR+DVKLNK +WS GI NDEEDAKEELYS+VTVAE+P EGL GLG
Sbjct: 1 DVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKEELYSIVTVAEVPPEGLTGLG 180
Query: 401 TKVVDETD*AVA 436
TK+++E D* ++
Sbjct: 181 TKIIEEED*CIS 216
>gb|DR745593.1|DR745593 RTCU1_30_F08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_F08_A029 5', mRNA sequence
Length = 410
Score = 101 bits (216), Expect = 4e-021
Identities = 41/89 (46%), Positives = 58/89 (65%)
Frame = +2 / +2
Query: 107 REYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRIDVKLNKHIWSSGIXXXXX 286
REYTI+LHKR+H +FKK+AP A+K + +FA+K MGT DVRID KLN+ +WS G+
Sbjct: 2 REYTIHLHKRVHNRSFKKRAPWAVKSVIEFARKHMGTNDVRIDPKLNQQLWSRGVKSVPH 181
Query: 287 XXXXXXXXXXNDEEDAKEELYSLVTVAEI 373
ND+E AKE+L++ + +
Sbjct: 182 RLRLKLERKRNDDESAKEKLFTYASYVPV 268
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 299,898,862
Number of Sequences: 355925
Number of extensions: 3997937
Number of successful extensions: 48152
Number of sequences better than 1.0e-020: 60
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8195309070
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)