TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716368.2.1
(1356 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus adde... 131 5e-067
gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinu... 131 5e-060
gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus adde... 131 5e-060
gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added... 129 2e-059
gb|AW011133.1|AW011133 ST17B02 Pine TriplEx shoot tip libra... 191 2e-052
gb|DR745426.1|DR745426 RTCU1_29_B05.g1_A029 Roots plus adde... 122 8e-048
gb|DR743865.1|DR743865 RTCU1_18_D05.g1_A029 Roots plus adde... 131 4e-038
gb|BE496299.1|BE496299 NXCI_022_D05_F NXCI (Nsf Xylem Compr... 131 3e-034
gb|DR387045.1|DR387045 RTHG1_19_C01.b1_A029 Roots plus adde... 108 2e-031
gb|DR385374.1|DR385374 RTHG1_8_F09.b1_A029 Roots plus added... 100 4e-029
gb|DR024403.1|DR024403 STRS1_64_E12.g1_A034 Shoot tip pitch... 95 4e-023
gb|CO164295.1|CO164295 FLD1_47_C09.b1_A029 Root flooded Pin... 53 2e-022
gb|DR018297.1|DR018297 STRS1_21_H12.g1_A034 Shoot tip pitch... 55 2e-021
gb|CO165280.1|CO165280 FLD1_53_B09.g1_A029 Root flooded Pin... 53 3e-021
gb|CO165205.1|CO165205 FLD1_53_B09.b1_A029 Root flooded Pin... 53 3e-021
gb|CO176120.1|CO176120 NDL1_59_H04.g1_A029 Needles control ... 55 3e-021
gb|CO164121.1|CO164121 FLD1_46_A09.b1_A029 Root flooded Pin... 60 4e-021
gb|CO168032.1|CO168032 FLD1_72_G05.g1_A029 Root flooded Pin... 60 4e-021
gb|CO164201.1|CO164201 FLD1_46_A09.g1_A029 Root flooded Pin... 60 4e-021
gb|CO159773.1|CO159773 FLD1_15_F09.g1_A029 Root flooded Pin... 53 7e-021
>gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_19_C01_A029 5', mRNA sequence
Length = 821
Score = 131 bits (280), Expect(3) = 5e-067
Identities = 52/99 (52%), Positives = 67/99 (67%)
Frame = -1 / +3
Query: 756 EHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVL 577
+HFD+SGTA MA G + L GV+ +L+RRVPC+Y G NIAF V+ GA+ Y+F +L
Sbjct: 408 KHFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAIL 587
Query: 576 IEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
IE+ED DGDL AV + +A S W M WGA W LN+G
Sbjct: 588 IEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNSG 704
Score = 121 bits (259), Expect(3) = 5e-067
Identities = 46/73 (63%), Positives = 55/73 (75%)
Frame = -1 / +3
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
+GDGSDGGACGY + V + PF S IAAGS L++GG GCGACY+VKCT N CS VT+
Sbjct: 180 DGDGSDGGACGYGSLVKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTV 359
Query: 801 VITDQSPGGLFPG 763
VITD+ PGG+ G
Sbjct: 360 VITDECPGGICSG 398
Score = 42.3 bits (86), Expect(3) = 5e-067
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -1 / +3
Query: 411 RVLVANNAIPAAWKPGKTYRSLV 343
R L ANN IP W+PG TYRSLV
Sbjct: 753 RTLTANNVIPQNWQPGATYRSLV 821
>gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_9_H09_A029 5', mRNA sequence
Length = 806
Score = 131 bits (280), Expect(2) = 5e-060
Identities = 52/99 (52%), Positives = 67/99 (67%)
Frame = -1 / +2
Query: 756 EHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVL 577
+HFD+SGTA MA G + L GV+ +L+RRVPC+Y G NIAF V+ GA+ Y+F +L
Sbjct: 437 KHFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAIL 616
Query: 576 IEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
IE+ED DGDL AV + +A S W M WGA W LN+G
Sbjct: 617 IEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNSG 733
Score = 121 bits (259), Expect(2) = 5e-060
Identities = 46/73 (63%), Positives = 55/73 (75%)
Frame = -1 / +2
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
+GDGSDGGACGY + V + PF S IAAGS L++GG GCGACY+VKCT N CS VT+
Sbjct: 209 DGDGSDGGACGYGSLVKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTV 388
Query: 801 VITDQSPGGLFPG 763
VITD+ PGG+ G
Sbjct: 389 VITDECPGGICSG 427
>gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_D05_A029 3', mRNA sequence
Length = 793
Score = 131 bits (280), Expect(2) = 5e-060
Identities = 52/99 (52%), Positives = 67/99 (67%)
Frame = -1 / -1
Query: 756 EHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVL 577
+HFD+SGTA MA G + L GV+ +L+RRVPC+Y G NIAF V+ GA+ Y+F +L
Sbjct: 343 KHFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAIL 164
Query: 576 IEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
IE+ED DGDL AV + +A S W M WGA W LN+G
Sbjct: 163 IEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNSG 47
Score = 121 bits (259), Expect(2) = 5e-060
Identities = 46/73 (63%), Positives = 55/73 (75%)
Frame = -1 / -1
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
+GDGSDGGACGY + V + PF S IAAGS L++GG GCGACY+VKCT N CS VT+
Sbjct: 571 DGDGSDGGACGYGSLVKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTV 392
Query: 801 VITDQSPGGLFPG 763
VITD+ PGG+ G
Sbjct: 391 VITDECPGGICSG 353
>gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F09_A029 5', mRNA sequence
Length = 717
Score = 129 bits (276), Expect(2) = 2e-059
Identities = 51/99 (51%), Positives = 66/99 (66%)
Frame = -1 / +3
Query: 756 EHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVL 577
+HFD+SGTA MA G + L GV+ +L+RRVPC+Y G NIAF V+ GA+ Y+F +L
Sbjct: 408 KHFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAIL 587
Query: 576 IEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
IE+ED DGDL AV + +A S W M WG W LN+G
Sbjct: 588 IEYEDGDGDLRAVYIKQANSNTWQGMEETWGCNWCLNSG 704
Score = 121 bits (259), Expect(2) = 2e-059
Identities = 46/73 (63%), Positives = 55/73 (75%)
Frame = -1 / +3
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
+GDGSDGGACGY + V + PF S IAAGS L++GG GCGACY+VKCT N CS VT+
Sbjct: 180 DGDGSDGGACGYGSLVKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTV 359
Query: 801 VITDQSPGGLFPG 763
VITD+ PGG+ G
Sbjct: 360 VITDECPGGICSG 398
>gb|AW011133.1|AW011133 ST17B02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST17B02, mRNA sequence
Length = 598
Score = 191 bits (412), Expect(2) = 2e-052
Identities = 76/156 (48%), Positives = 98/156 (62%)
Frame = -1 / +2
Query: 888 LYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQSPGGLFPGEVEHFDMSGTAMGAMARP 709
+++GGEGCGACY+VKC +CS +PVT+VITD+ PGG HFD+SG A G MA
Sbjct: 8 VFKGGEGCGACYKVKCMEKGSCSEKPVTVVITDECPGGYCAFGRTHFDLSGAAFGHMATN 187
Query: 708 GMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLM 529
G L G L +LYRR C+Y G NI F V +G+ Y+F +LI +ED DGD+ A+ L
Sbjct: 188 GKTPALLNSGELPVLYRRTLCEYPGKNITFHVTEGSTAYWFSILIGYEDGDGDVGAMHLK 367
Query: 528 EAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
+A S W M H WGA W L LK PF +R+T+
Sbjct: 368 QAESDAWMEMRHVWGANWCLLGNDSLKXPFSVRVTT 475
Score = 35.4 bits (71), Expect(2) = 2e-052
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / +2
Query: 426 TSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
T S+R L A N IP W P TY++ +N+
Sbjct: 473 TLTSKRTLSARNVIPEHWYPNATYKARLNF 562
>gb|DR745426.1|DR745426 RTCU1_29_B05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_29_B05_A029 5', mRNA sequence
Length = 619
Score = 122 bits (262), Expect(2) = 8e-048
Identities = 45/73 (61%), Positives = 57/73 (78%)
Frame = -1 / +1
Query: 981 NGDGSDGGACGYQTAVGKKPFDSMIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTI 802
+GDGS+GGACGY + V +KPF S +AAGS L+ GG+GCGACY+VKCT N+ CS VT+
Sbjct: 190 DGDGSEGGACGYGSVVKEKPFQSKVAAGSPALFEGGKGCGACYQVKCTENSVCSQTAVTV 369
Query: 801 VITDQSPGGLFPG 763
VITD+ PGG+ G
Sbjct: 370 VITDECPGGICSG 408
Score = 89.0 bits (188), Expect(2) = 8e-048
Identities = 33/66 (50%), Positives = 48/66 (72%)
Frame = -1 / +1
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SGT+ MA PG + G++ IL+RRVPC+Y G NIAF V++GA+ ++F +L+
Sbjct: 421 HFDLSGTSFTDMASPGTSSDFLNAGIVSILFRRVPCEYPGNNIAFHVNEGASDHWFAILV 600
Query: 573 EFEDDD 556
E+ED D
Sbjct: 601 EYEDGD 618
>gb|DR743865.1|DR743865 RTCU1_18_D05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_D05_A029 5', mRNA sequence
Length = 707
Score = 131 bits (280), Expect(2) = 4e-038
Identities = 52/99 (52%), Positives = 67/99 (67%)
Frame = -1 / -2
Query: 756 EHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVL 577
+HFD+SGTA MA G + L GV+ +L+RRVPC+Y G NIAF V+ GA+ Y+F +L
Sbjct: 700 KHFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAIL 521
Query: 576 IEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNG 460
IE+ED DGDL AV + +A S W M WGA W LN+G
Sbjct: 520 IEYEDGDGDLRAVYIKQANSNTWQGMEETWGANWCLNSG 404
Score = 48.3 bits (99), Expect(2) = 4e-038
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -1 / -2
Query: 411 RVLVANNAIPAAWKPGKTYRSLVNY 337
R L ANN IP W+PG TYRSLVNY
Sbjct: 355 RTLTANNVIPQNWQPGATYRSLVNY 281
>gb|BE496299.1|BE496299 NXCI_022_D05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_022_D05 5' similar to Arabidopsis
thaliana sequence At4g28250 putative
beta-expansin/allergen protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 458
Score = 131 bits (281), Expect(2) = 3e-034
Identities = 54/111 (48%), Positives = 67/111 (60%)
Frame = -1 / +1
Query: 753 HFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLI 574
HFD+SG A G MA G L G L +LYRR C+Y G NI F V +G+ Y+F +LI
Sbjct: 13 HFDLSGAAFGRMATNGKTPALLNTGELPVLYRRTLCEYPGKNITFHVTEGSTAYWFSILI 192
Query: 573 EFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNNGRKLKAPFGLRLTS 421
E+ED DGD+ A+ L +A S W M H WGA W L G LKAPF +T+
Sbjct: 193 EYEDGDGDVGAMHLKQADSDAWMEMNHVWGANWCLLGGTPLKAPFSXXVTT 345
Score = 35.0 bits (70), Expect(2) = 3e-034
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1 / +1
Query: 426 TSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
T S+R L A N IP W P TY++ +N+
Sbjct: 343 TLTSKRTLSARNVIPDHWYPNATYKARLNF 432
>gb|DR387045.1|DR387045 RTHG1_19_C01.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_19_C01_A029 3', mRNA sequence
Length = 725
Score = 108 bits (231), Expect(2) = 2e-031
Identities = 41/74 (55%), Positives = 53/74 (71%)
Frame = -1 / +2
Query: 681 GVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAGSGVWTP 502
GV+ +L+RRVPC+Y G NIAF V+ GA+ Y+F +LIE+ED DGDL AV + +A S W
Sbjct: 11 GVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQG 190
Query: 501 MAHNWGATWRLNNG 460
M WGA W LN+G
Sbjct: 191 MEETWGANWCLNSG 232
Score = 48.3 bits (99), Expect(2) = 2e-031
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -1 / +2
Query: 411 RVLVANNAIPAAWKPGKTYRSLVNY 337
R L ANN IP W+PG TYRSLVNY
Sbjct: 281 RTLTANNVIPQNWQPGATYRSLVNY 355
>gb|DR385374.1|DR385374 RTHG1_8_F09.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F09_A029 3', mRNA sequence
Length = 695
Score = 100 bits (214), Expect(2) = 4e-029
Identities = 38/68 (55%), Positives = 48/68 (70%)
Frame = -1 / +2
Query: 663 YRRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWG 484
+RRVPC+Y G NIAF V+ GA+ Y+F +LIE+ED DGDL AV + +A S W M WG
Sbjct: 2 FRRVPCEYPGKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQANSNTWQGMEETWG 181
Query: 483 ATWRLNNG 460
A W LN+G
Sbjct: 182 ANWCLNSG 205
Score = 48.3 bits (99), Expect(2) = 4e-029
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -1 / +2
Query: 411 RVLVANNAIPAAWKPGKTYRSLVNY 337
R L ANN IP W+PG TYRSLVNY
Sbjct: 254 RTLTANNVIPQNWQPGATYRSLVNY 328
>gb|DR024403.1|DR024403 STRS1_64_E12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_64_E12_A034 5', mRNA sequence
Length = 855
Score = 94.5 bits (200), Expect(2) = 4e-023
Identities = 35/74 (47%), Positives = 48/74 (64%)
Frame = -1 / +2
Query: 681 GVLRILYRRVPCKYTGVNIAFKVDQGANPYYFDVLIEFEDDDGDLSAVDLMEAGSGVWTP 502
G + +LYRR C++ N+ F V++G+ Y+F +LIE+ED DGD+ AV L EA S W
Sbjct: 41 GEIPVLYRRTLCEFPRKNVTFHVNEGSTAYWFSILIEYEDGDGDVGAVHLREADSDEWMA 220
Query: 501 MAHNWGATWRLNNG 460
M H+WGA W L G
Sbjct: 221 MQHSWGANWCLLGG 262
Score = 34.5 bits (69), Expect(2) = 4e-023
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1 / +2
Query: 426 TSDSRRVLVANNAIPAAWKPGKTYRSLVNY 337
T S R L A N IP W P +YRS +N+
Sbjct: 296 TLSSNRTLSARNIIPQNWYPTASYRSRLNF 385
>gb|CO164295.1|CO164295 FLD1_47_C09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_47_C09_A029 3', mRNA sequence
Length = 882
Score = 52.8 bits (109), Expect(5) = 2e-022
Identities = 22/42 (52%), Positives = 25/42 (59%)
Frame = -1 / -1
Query: 903 AGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQSPG 778
A + LYR G GCGACY+V CT C+ V IVITD G
Sbjct: 624 ACAAQLYRDGLGCGACYQVICTNQDLCTEGGVKIVITDMGQG 499
Score = 46.9 bits (96), Expect(5) = 2e-022
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = -1 / -1
Query: 702 ADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGANPYYF 586
+D+L A GV+ I Y+RV C+Y G N+ FK+D+ N Y+
Sbjct: 435 SDQLVAMGVVDIQYKRVSCQYPGQNLMFKIDESTNFPYY 319
Score = 28.1 bits (55), Expect(5) = 2e-022
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1 / -1
Query: 420 DSRRVLVANNAIPAAWKPGKTYRS 349
D ++ + A NAIPA W G Y S
Sbjct: 147 DQQQWITAANAIPANWTAGAVYDS 76
Score = 27.2 bits (53), Expect(5) = 2e-022
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1 / -1
Query: 597 PYYFDVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATW 475
PYY + ++ D+ AVD+ E + N GA W
Sbjct: 327 PYYLAFIFWYQAGQKDILAVDVCETATLQCKLRVTNHGAVW 205
Score = 22.6 bits (43), Expect(5) = 2e-022
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1 / -1
Query: 972 GSDGGACGY 946
G+D GACGY
Sbjct: 687 GNDRGACGY 661
>gb|DR018297.1|DR018297 STRS1_21_H12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_21_H12_A034 5', mRNA sequence
Length = 752
Score = 54.7 bits (113), Expect(4) = 2e-021
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = -1 / +1
Query: 912 MIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITD 790
++A+ S +YR G GCGACY+++CT C+ V +++TD
Sbjct: 85 VMASASAKIYRDGVGCGACYQIRCTDPGVCTKSGVKVLVTD 207
Score = 41.8 bits (85), Expect(4) = 2e-021
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1 / +1
Query: 597 PYYFDVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNN 463
P Y V ++ D++AVD+ AGS W M H GA W + N
Sbjct: 388 PDYLAVQFLYQGGQTDITAVDINRAGSSGWQYMTHKNGAIWGIQN 522
Score = 34.1 bits (68), Expect(4) = 2e-021
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1 / +1
Query: 750 FDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGA 601
F +S + +A A + G + + Y+R+PC Y N+ KVD+ +
Sbjct: 232 FVLSARSFSKLAVASKAAQFLKMGTVDVDYKRIPCDYGSQNMTVKVDKSS 381
Score = 27.6 bits (54), Expect(4) = 2e-021
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1 / +1
Query: 420 DSRRVLVANNAIPAAWKPGKTYRS 349
D V N +PA W+PG Y S
Sbjct: 571 DGSWVWPTRNLLPAIWRPGSVYDS 642
>gb|CO165280.1|CO165280 FLD1_53_B09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_53_B09_A029 5', mRNA sequence
Length = 850
Score = 53.3 bits (110), Expect(4) = 3e-021
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = -1 / -2
Query: 912 MIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITD 790
++A+ S +YR G GCGACY+++CT C+ V +++TD
Sbjct: 783 VMASASAKIYREGVGCGACYQMRCTDPGVCTKSGVKVLVTD 661
Score = 39.6 bits (80), Expect(4) = 3e-021
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1 / -2
Query: 597 PYYFDVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNN 463
P Y V ++ D++AVD+ GS W M H GA W + N
Sbjct: 480 PDYLAVQFLYQGGQTDITAVDIDRVGSSGWQYMTHKNGAIWGIQN 346
Score = 35.9 bits (72), Expect(4) = 3e-021
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1 / -2
Query: 750 FDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGA 601
F +S + +A A +L G + I Y+R+PC Y N+ KVD+ +
Sbjct: 636 FVLSDRSFSKLAVASKAAQLLKMGTVDIDYKRIPCDYGSQNMTVKVDKSS 487
Score = 28.6 bits (56), Expect(4) = 3e-021
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1 / -2
Query: 420 DSRRVLVANNAIPAAWKPGKTYRS 349
D V N +PA W+PG Y S
Sbjct: 297 DGSWVWPTRNLLPAIWRPGSVYES 226
>gb|CO165205.1|CO165205 FLD1_53_B09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_53_B09_A029 3', mRNA sequence
Length = 798
Score = 53.3 bits (110), Expect(4) = 3e-021
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = -1 / -3
Query: 912 MIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITD 790
++A+ S +YR G GCGACY+++CT C+ V +++TD
Sbjct: 565 VMASASAKIYREGVGCGACYQMRCTDPGVCTKSGVKVLVTD 443
Score = 39.6 bits (80), Expect(4) = 3e-021
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1 / -3
Query: 597 PYYFDVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNN 463
P Y V ++ D++AVD+ GS W M H GA W + N
Sbjct: 262 PDYLAVQFLYQGGQTDITAVDIDRVGSSGWQYMTHKNGAIWGIQN 128
Score = 35.9 bits (72), Expect(4) = 3e-021
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1 / -3
Query: 750 FDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGA 601
F +S + +A A +L G + I Y+R+PC Y N+ KVD+ +
Sbjct: 418 FVLSDRSFSKLAVASKAAQLLKMGTVDIDYKRIPCDYGSQNMTVKVDKSS 269
Score = 28.6 bits (56), Expect(4) = 3e-021
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1 / -3
Query: 420 DSRRVLVANNAIPAAWKPGKTYRS 349
D V N +PA W+PG Y S
Sbjct: 79 DGSWVWPTRNLLPAIWRPGSVYES 8
>gb|CO176120.1|CO176120 NDL1_59_H04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_59_H04_A029 5', mRNA sequence
Length = 697
Score = 54.7 bits (113), Expect(4) = 3e-021
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = -1 / +2
Query: 912 MIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITD 790
++A+ S +YR G GCGACY+++CT C+ V +++TD
Sbjct: 116 VMASASAKIYRDGVGCGACYQIRCTDPGVCTKSGVKVLVTD 238
Score = 41.8 bits (85), Expect(4) = 3e-021
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1 / +2
Query: 597 PYYFDVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNN 463
P Y V ++ D++AVD+ AGS W M H GA W + N
Sbjct: 419 PDYLAVQFLYQGGQTDITAVDINRAGSSGWQYMTHKNGAIWGIQN 553
Score = 34.1 bits (68), Expect(4) = 3e-021
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1 / +2
Query: 750 FDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGA 601
F +S + +A A + G + + Y+R+PC Y N+ KVD+ +
Sbjct: 263 FVLSARSFSKLAVASKAAQFLKMGTVDVDYKRIPCDYGSQNMTVKVDKSS 412
Score = 26.7 bits (52), Expect(4) = 3e-021
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1 / +2
Query: 393 NAIPAAWKPGKTYRS 349
N +PA W+PG Y S
Sbjct: 629 NLLPAIWRPGSVYDS 673
>gb|CO164121.1|CO164121 FLD1_46_A09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_A09_A029 3', mRNA sequence
Length = 869
Score = 59.7 bits (124), Expect(3) = 4e-021
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = -1 / +1
Query: 903 AGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQSPG 778
A LYR G GCGACY+V+CT N C + V IV+TD G
Sbjct: 238 AAVAQLYRNGTGCGACYKVRCTNNDLCRSEGVKIVVTDYGQG 363
Score = 54.2 bits (112), Expect(3) = 4e-021
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = -1 / +1
Query: 765 GEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGAN 598
G+ F MS + RP A++L + GV+ I Y+R+PC+Y G N+ FK+D +N
Sbjct: 361 GDRTDFIMSLHGYSKLGRPDKANQLISLGVVDIEYKRIPCQYEGYNLMFKIDSSSN 528
Score = 25.8 bits (50), Expect(3) = 4e-021
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / +1
Query: 981 NGDGSDGGACGY 946
+G G++GGACGY
Sbjct: 166 DGLGTEGGACGY 201
>gb|CO168032.1|CO168032 FLD1_72_G05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_72_G05_A029 5', mRNA sequence
Length = 716
Score = 59.7 bits (124), Expect(3) = 4e-021
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = -1 / +1
Query: 903 AGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQSPG 778
A LYR G GCGACY+V+CT N C + V IV+TD G
Sbjct: 163 AAVAQLYRNGTGCGACYKVRCTNNDLCRSEGVKIVVTDYGQG 288
Score = 54.2 bits (112), Expect(3) = 4e-021
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = -1 / +1
Query: 765 GEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGAN 598
G+ F MS + RP A++L + GV+ I Y+R+PC+Y G N+ FK+D +N
Sbjct: 286 GDRTDFIMSLHGYSKLGRPDKANQLISLGVVDIEYKRIPCQYEGYNLMFKIDSSSN 453
Score = 25.8 bits (50), Expect(3) = 4e-021
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / +1
Query: 981 NGDGSDGGACGY 946
+G G++GGACGY
Sbjct: 91 DGLGTEGGACGY 126
>gb|CO164201.1|CO164201 FLD1_46_A09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_A09_A029 5', mRNA sequence
Length = 630
Score = 59.7 bits (124), Expect(3) = 4e-021
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = -1 / +3
Query: 903 AGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITDQSPG 778
A LYR G GCGACY+V+CT N C + V IV+TD G
Sbjct: 273 AAVAQLYRNGTGCGACYKVRCTNNDLCRSEGVKIVVTDYGQG 398
Score = 54.2 bits (112), Expect(3) = 4e-021
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = -1 / +3
Query: 765 GEVEHFDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGAN 598
G+ F MS + RP A++L + GV+ I Y+R+PC+Y G N+ FK+D +N
Sbjct: 396 GDRTDFIMSLHGYSKLGRPDKANQLISLGVVDIEYKRIPCQYEGYNLMFKIDSSSN 563
Score = 25.8 bits (50), Expect(3) = 4e-021
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / +3
Query: 981 NGDGSDGGACGY 946
+G G++GGACGY
Sbjct: 201 DGLGTEGGACGY 236
>gb|CO159773.1|CO159773 FLD1_15_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_F09_A029 5', mRNA sequence
Length = 811
Score = 53.3 bits (110), Expect(4) = 7e-021
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = -1 / +3
Query: 912 MIAAGSTPLYRGGEGCGACYEVKCTTNAACSGQPVTIVITD 790
++A+ S +YR G GCGACY+++CT C+ V +++TD
Sbjct: 240 VMASASAKIYREGVGCGACYQMRCTDPGVCTKSGVKVLVTD 362
Score = 39.6 bits (80), Expect(4) = 7e-021
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1 / +3
Query: 597 PYYFDVLIEFEDDDGDLSAVDLMEAGSGVWTPMAHNWGATWRLNN 463
P Y V ++ D++AVD+ GS W M H GA W + N
Sbjct: 543 PDYLAVQFLYQGGQTDITAVDIDRVGSSGWQYMTHKNGAIWGIQN 677
Score = 34.5 bits (69), Expect(4) = 7e-021
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1 / +3
Query: 750 FDMSGTAMGAMARPGMADKLRAGGVLRILYRRVPCKYTGVNIAFKVDQGA 601
F +S + +A A + G + I Y+R+PC Y N+ KVD+ +
Sbjct: 387 FVLSARSFSKLAVASKAAQFLKMGTVDIDYKRIPCDYGSQNMTVKVDKSS 536
Score = 28.6 bits (56), Expect(4) = 7e-021
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1 / +3
Query: 420 DSRRVLVANNAIPAAWKPGKTYRS 349
D V N +PA W+PG Y S
Sbjct: 726 DGSWVWPTRNLLPAIWRPGSVYES 797
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 604,423,548
Number of Sequences: 355925
Number of extensions: 7829080
Number of successful extensions: 50831
Number of sequences better than 1.0e-020: 23
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 21122700615
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)