TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1366945.2.1
(1191 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CR394075.1|CR394075 CR394075 RN Pinus pinaster cDNA clon... 83 1e-028
gb|CO166641.1|CO166641 FLD1_63_A08.g1_A029 Root flooded Pin... 83 2e-028
gb|DR109530.1|DR109530 RTS1_3_A06.b1_A029 Roots minus sulfu... 79 5e-028
gb|AL750622.1|AL750622 AL750622 RN Pinus pinaster cDNA clon... 82 9e-028
dbj|BD236746.1| Materials and method for modification of pl... 81 2e-027
gb|BQ695909.1|BQ695909 NXPV_034_B08_F NXPV (Nsf Xylem Plani... 79 2e-027
gb|CF392748.1|CF392748 RTDR3_19_C07.b1_A022 Loblolly pine r... 79 2e-027
gb|BF777451.1|BF777451 NXSI_071_G05_F NXSI (Nsf Xylem Side ... 79 2e-027
gb|BX252092.1|BX252092 BX252092 Pinus pinaster differenciat... 78 2e-027
gb|DR025172.1|DR025172 STRS1_70_C05.b1_A034 Shoot tip pitch... 79 3e-027
gb|BQ697078.1|BQ697078 NXPV_049_B10_F NXPV (Nsf Xylem Plani... 79 3e-027
gb|BF610287.1|BF610287 NXSI_057_D08_F NXSI (Nsf Xylem Side ... 79 3e-027
gb|AW869898.1|AW869898 NXNV_122_G11_F Nsf Xylem Normal wood... 81 4e-027
dbj|BD236784.1| Materials and method for modification of pl... 79 6e-027
gb|BQ696128.1|BQ696128 NXPV_036_F10_F NXPV (Nsf Xylem Plani... 79 8e-027
gb|BG832568.1|BG832568 NXPV_076_F01_F NXPV (Nsf Xylem Plani... 79 8e-027
gb|BX678657.1|BX678657 BX678657 RS Pinus pinaster cDNA clon... 79 8e-027
gb|CO367102.1|CO367102 RTK1_32_D11.b1_A029 Roots minus pota... 79 1e-026
gb|CV032782.1|CV032782 RTNACL1_18_G05.b1_A029 Roots plus ad... 79 1e-026
gb|DR160605.1|DR160605 RTFE1_7_B07.b1_A029 Roots minus iron... 79 1e-026
gb|CO199765.1|CO199765 GEO2_3_G12.b1_A032 Root gravitropism... 79 1e-026
gb|CO361939.1|CO361939 NDL2_8_C07.b1_A029 Needles control 2... 79 1e-026
gb|DR056255.1|DR056255 RTCA1_29_C04.b1_A029 Roots minus cal... 79 1e-026
gb|DN629845.1|DN629845 EST980661 Subtracted pine embryo lib... 79 1e-026
gb|DN628728.1|DN628728 EST979544 Subtracted pine embryo lib... 79 1e-026
gb|DN631344.1|DN631344 EST982160 Subtracted pine embryo lib... 79 1e-026
gb|DN631607.1|DN631607 EST982423 Subtracted pine embryo lib... 79 1e-026
gb|DN632322.1|DN632322 EST983138 Subtracted pine embryo lib... 79 1e-026
gb|DN632381.1|DN632381 EST983197 Subtracted pine embryo lib... 79 1e-026
gb|DN633618.1|DN633618 EST984434 Subtracted pine embryo lib... 79 1e-026
gb|DN634348.1|DN634348 EST985164 Subtracted pine embryo lib... 79 1e-026
gb|CF673121.1|CF673121 RTCNT1_76_F05.b1_A029 Root control P... 79 1e-026
gb|DN631688.1|DN631688 EST982504 Subtracted pine embryo lib... 79 1e-026
gb|DN632237.1|DN632237 EST983053 Subtracted pine embryo lib... 79 1e-026
gb|DR111723.1|DR111723 RTS1_19_G01.g1_A029 Roots minus sulf... 79 1e-026
gb|CF673112.1|CF673112 RTCNT1_76_E05.b1_A029 Root control P... 79 1e-026
gb|CO159044.1|CO159044 FLD1_11_B01.b1_A029 Root flooded Pin... 79 1e-026
gb|DN632279.1|DN632279 EST983095 Subtracted pine embryo lib... 79 1e-026
gb|CO196963.1|CO196963 GEO1_3_A02.b1_A029 Root gravitropism... 77 1e-026
gb|DN632413.1|DN632413 EST983229 Subtracted pine embryo lib... 79 1e-026
gb|CV032719.1|CV032719 RTNACL1_18_A01.b1_A029 Roots plus ad... 79 1e-026
gb|CF391332.1|CF391332 RTDR3_1_G07.b1_A022 Loblolly pine ro... 79 1e-026
gb|DR181663.1|DR181663 RTMNUT1_40_F05.b2_A029 Roots minus m... 79 1e-026
gb|BQ697463.1|BQ697463 NXPV_056_F10_F NXPV (Nsf Xylem Plani... 79 1e-026
gb|BQ695956.1|BQ695956 NXPV_034_G08_F NXPV (Nsf Xylem Plani... 79 1e-026
gb|BI202790.1|BI202790 NXPV_090_E07_F NXPV (Nsf Xylem Plani... 79 1e-026
gb|BQ698435.1|BQ698435 NXPV_069_H02_F NXPV (Nsf Xylem Plani... 79 1e-026
gb|BG832827.1|BG832827 NXPV_081_B10_F NXPV (Nsf Xylem Plani... 79 1e-026
gb|BQ696195.1|BQ696195 NXPV_039_D12_F NXPV (Nsf Xylem Plani... 79 1e-026
gb|AW289793.1|AW289793 NXNV006F07F Nsf Xylem Normal wood Ve... 79 1e-026
gb|CD028410.1|CD028410 NXNV006F07 Nsf Xylem Normal wood Ver... 79 1e-026
dbj|BD236710.1| Materials and method for modification of pl... 79 1e-026
gb|CO158717.1|CO158717 FLD1_8_F08.g1_A029 Root flooded Pinu... 79 1e-026
gb|AW289496.1|AW289496 NXNV001C09F Nsf Xylem Normal wood Ve... 81 2e-026
gb|CD028036.1|CD028036 NXNV001C09 Nsf Xylem Normal wood Ver... 81 2e-026
gb|DN608618.1|DN608618 EST961668 Subtracted pine embryo lib... 81 2e-026
gb|DT627604.1|DT627604 EST1156353 Subtracted pine embryo li... 81 2e-026
gb|DT629590.1|DT629590 EST1156160 Subtracted pine embryo li... 81 2e-026
gb|DN609269.1|DN609269 EST962319 Subtracted pine embryo lib... 81 2e-026
gb|CO164465.1|CO164465 FLD1_48_E06.b1_A029 Root flooded Pin... 77 3e-026
dbj|BD236751.1| Materials and method for modification of pl... 79 3e-026
gb|DR180351.1|DR180351 RTMNUT1_28_C07.b1_A029 Roots minus m... 77 4e-026
gb|CO162167.1|CO162167 FLD1_33_C09.g1_A029 Root flooded Pin... 76 5e-026
gb|AL750591.1|AL750591 AL750591 RN Pinus pinaster cDNA clon... 79 2e-025
gb|CR394173.1|CR394173 CR394173 RN Pinus pinaster cDNA clon... 79 2e-025
gb|AL750933.1|AL750933 AL750933 RS Pinus pinaster cDNA clon... 79 2e-025
gb|DR112576.1|DR112576 RTS1_29_D06.b1_A029 Roots minus sulf... 79 2e-025
gb|DN611788.1|DN611788 EST964838 Subtracted pine embryo lib... 79 2e-025
gb|DR053945.1|DR053945 RTCA1_14_G03.b1_A029 Roots minus cal... 79 2e-025
gb|DT629699.1|DT629699 EST1156269 Subtracted pine embryo li... 79 2e-025
gb|DN609016.1|DN609016 EST962066 Subtracted pine embryo lib... 79 2e-025
gb|DN608753.1|DN608753 EST961803 Subtracted pine embryo lib... 79 2e-025
gb|CO365852.1|CO365852 RTK1_19_D03.g1_A029 Roots minus pota... 79 2e-025
gb|CF398188.1|CF398188 RTDS3_21_H03.g1_A022 Drought-stresse... 73 3e-025
gb|DR014514.1|DR014514 HEAT1_50_A06.b1_A029 Root at 37 C fo... 78 3e-025
gb|BG318448.1|BG318448 NXPV_013_G05_F NXPV (Nsf Xylem Plani... 79 3e-025
gb|CF398098.1|CF398098 RTDS3_21_H03.b1_A022 Drought-stresse... 73 4e-025
gb|DR118060.1|DR118060 RTMG1_10_H07.g1_A029 Roots minus mag... 78 5e-025
gb|CX648384.1|CX648384 COLD1_28_G08.b1_A029 Root cold Pinus... 73 6e-025
gb|CX648468.1|CX648468 COLD1_28_G08.g1_A029 Root cold Pinus... 73 6e-025
gb|BG318443.1|BG318443 NXPV_013_F12_F NXPV (Nsf Xylem Plani... 79 1e-024
gb|DN614133.1|DN614133 EST967183 Subtracted pine embryo lib... 76 2e-024
gb|DT629207.1|DT629207 EST1155777 Subtracted pine embryo li... 76 2e-024
gb|DR160693.1|DR160693 RTFE1_7_B07.g1_A029 Roots minus iron... 79 3e-024
gb|BI077356.1|BI077356 NXPV_096_B08_F NXPV (Nsf Xylem Plani... 79 2e-023
gb|CF392189.1|CF392189 RTDR3_8_F01.b1_A022 Loblolly pine ro... 84 7e-023
gb|DR069381.1|DR069381 RTDK1_7_A07.b1_A029 Roots, dark Pinu... 84 9e-023
dbj|BD236744.1| Materials and method for modification of pl... 84 9e-023
gb|CR392549.1|CR392549 CR392549 RN Pinus pinaster cDNA clon... 83 9e-023
gb|AI920133.1|AI920133 1663 Pine Lambda Zap Xylem library P... 61 1e-022
gb|CO365044.1|CO365044 RTK1_23_G08.b1_A029 Roots minus pota... 83 1e-022
gb|DR389051.1|DR389051 RTHG1_32_D01.b1_A029 Roots plus adde... 83 1e-022
gb|DR742826.1|DR742826 RTCU1_7_F03.b2_A029 Roots plus added... 83 1e-022
gb|BX677428.1|BX677428 BX677428 RN Pinus pinaster cDNA clon... 80 2e-022
gb|DR092340.1|DR092340 RTAL1_1_A06.b1_A029 Roots plus added... 65 4e-022
gb|CR394169.1|CR394169 CR394169 RN Pinus pinaster cDNA clon... 70 1e-021
gb|CX712742.1|CX712742 RTPQ1_4_B01.g2_A032 Roots treated wi... 82 2e-021
gb|CX712674.1|CX712674 RTPQ1_4_B01.b2_A032 Roots treated wi... 82 2e-021
gb|CF392035.1|CF392035 RTDR3_12_A10.g1_A022 Loblolly pine r... 82 2e-021
gb|CF392040.1|CF392040 RTDR3_12_E11.g1_A022 Loblolly pine r... 82 5e-021
gb|DR101339.1|DR101339 STRR1_72_E08.b1_A033 Stem Response R... 79 5e-021
gb|DN627807.1|DN627807 EST978623 Subtracted pine embryo lib... 79 5e-021
gb|CO364599.1|CO364599 RTK1_16_E02.g1_A029 Roots minus pota... 79 7e-021
gb|CO166031.1|CO166031 FLD1_58_G05.g1_A029 Root flooded Pin... 76 7e-021
gb|CO165955.1|CO165955 FLD1_58_G05.b1_A029 Root flooded Pin... 76 7e-021
gb|CO364519.1|CO364519 RTK1_16_E02.b1_A029 Roots minus pota... 79 7e-021
gb|DT630120.1|DT630120 EST1154532 Subtracted pine embryo li... 79 7e-021
gb|DT630375.1|DT630375 EST1154787 Subtracted pine embryo li... 79 7e-021
gb|DN631501.1|DN631501 EST982317 Subtracted pine embryo lib... 79 7e-021
gb|DN632414.1|DN632414 EST983230 Subtracted pine embryo lib... 79 7e-021
gb|CO362853.1|CO362853 RTK1_6_D09.b1_A029 Roots minus potas... 79 7e-021
gb|DR060057.1|DR060057 RTNIT1_25_A01.g1_A029 Roots minus ni... 79 7e-021
gb|DR018214.1|DR018214 STRS1_21_F05.b1_A034 Shoot tip pitch... 76 7e-021
gb|CO174833.1|CO174833 NDL1_46_C11.g1_A029 Needles control ... 76 7e-021
gb|CF474487.1|CF474487 RTWW2_9_F05.b1_A021 Well-watered lob... 79 7e-021
gb|DR112944.1|DR112944 RTS1_31_G04.g1_A029 Roots minus sulf... 79 7e-021
dbj|BD236780.1| Materials and method for modification of pl... 79 7e-021
>gb|CR394075.1|CR394075 CR394075 RN Pinus pinaster cDNA clone RN73D05_1, mRNA sequence
Length = 556
Score = 83.1 bits (175), Expect(2) = 1e-028
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DWSKAPFVASFR F+A A
Sbjct: 108 RVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNFNAPA 224
Score = 64.3 bits (134), Expect(2) = 1e-028
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +1 / +3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+ L ++++WV+ +MIY+YCAD KRFPQG+PAECK
Sbjct: 246 EALDSNQEQKLQWVRNNYMIYDYCADTKRFPQGLPAECK 362
>gb|CO166641.1|CO166641 FLD1_63_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_63_A08_A029 5', mRNA sequence
Length = 873
Score = 82.6 bits (174), Expect(2) = 2e-028
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DWSKAPFVASFR F+A A
Sbjct: 366 RVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNFNAAA 482
Score = 63.8 bits (133), Expect(2) = 2e-028
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1 / +3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+ L ++++WV+ +MIY+YCAD RFPQGVPAECK
Sbjct: 504 EDLDSNQEQKLQWVRNNYMIYDYCADTNRFPQGVPAECK 620
>gb|DR109530.1|DR109530 RTS1_3_A06.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_A06_A029 3', mRNA sequence
Length = 688
Score = 79.4 bits (167), Expect(2) = 5e-028
Identities = 26/40 (65%), Positives = 35/40 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADAC 120
++Y+SLWNADDWAT+GG VK DW+KAPFVA++R F ++C
Sbjct: 99 KVYSSLWNADDWATRGGLVKTDWTKAPFVANYRNFKVESC 218
Score = 66.1 bits (138), Expect(2) = 5e-028
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = +1 / +3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAEC 324
QQ S R+RWVQR +M YNYC D+KRFP G P EC
Sbjct: 315 QQQSQQQKERLRWVQRNYMTYNYCTDSKRFPNGFPPEC 428
>gb|AL750622.1|AL750622 AL750622 RN Pinus pinaster cDNA clone RN05E07 similar to XYLOGLUCAN
ENDOTRANSGLYCOSYLASE, mRNA sequence
Length = 611
Score = 82.2 bits (173), Expect(2) = 9e-028
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVASFR F+A A
Sbjct: 142 RVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFNASA 258
Score = 62.5 bits (130), Expect(2) = 9e-028
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 319 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 411
>dbj|BD236746.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 476
Score = 81.3 bits (171), Expect(2) = 2e-027
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +1 / -2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVASFR F+A A
Sbjct: 463 RVYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFNAAA 347
Score = 62.5 bits (130), Expect(2) = 2e-027
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / -2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 286 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 194
>gb|BQ695909.1|BQ695909 NXPV_034_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_034_B08 5' similar to Arabidopsis
thaliana sequence At5g57560 TCH4 protein (gb|AAA92363.1)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 565
Score = 78.5 bits (165), Expect(2) = 2e-027
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 117 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 233
Score = 64.8 bits (135), Expect(2) = 2e-027
Identities = 20/33 (60%), Positives = 29/33 (87%)
Frame = +1 / +3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
+R++WV++ +MIY+YCAD KRFPQG P ECK++
Sbjct: 294 QRLQWVRKNYMIYDYCADTKRFPQGPPXECKIK 392
>gb|CF392748.1|CF392748 RTDR3_19_C07.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_19_C07_A022 3', mRNA
sequence
Length = 540
Score = 79.4 bits (167), Expect(2) = 2e-027
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSA 111
R+Y+SLWNADDWAT+GG VK DW+KAPFVASF FSA
Sbjct: 114 RMYSSLWNADDWATRGGLVKTDWTKAPFVASFSNFSA 224
Score = 63.8 bits (133), Expect(2) = 2e-027
Identities = 20/39 (51%), Positives = 31/39 (79%)
Frame = +1 / +3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+ L ++++WV++ +MIY+YC+D KRFPQG+PAECK
Sbjct: 255 EALDSNQEQKLQWVRKNYMIYDYCSDTKRFPQGLPAECK 371
>gb|BF777451.1|BF777451 NXSI_071_G05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_071_G05 5' similar to Arabidopsis thaliana
sequence At3g23730 xyloglucan endotransglycosylase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 441
Score = 78.5 bits (165), Expect(2) = 2e-027
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 55 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 171
Score = 64.8 bits (135), Expect(2) = 2e-027
Identities = 20/33 (60%), Positives = 29/33 (87%)
Frame = +1 / +1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
+R++WV++ +MIY+YCAD KRFPQG P ECK++
Sbjct: 232 QRLQWVRKNYMIYDYCADTKRFPQGPPXECKIK 330
>gb|BX252092.1|BX252092 BX252092 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP059F03, mRNA sequence
Length = 353
Score = 77.6 bits (163), Expect(2) = 2e-027
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSA 111
R+Y+SLWNADDWAT+GG VK DW+K PFVASF FSA
Sbjct: 11 RMYSSLWNADDWATRGGLVKTDWTKVPFVASFSNFSA 121
Score = 65.7 bits (137), Expect(2) = 2e-027
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = +1 / +2
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+ L ++++WV++ +MIY+YCAD KRFPQG+PAECK
Sbjct: 152 EDLDSNQEQKLQWVRKNYMIYDYCADTKRFPQGLPAECK 268
>gb|DR025172.1|DR025172 STRS1_70_C05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_C05_A034 3', mRNA sequence
Length = 849
Score = 79.0 bits (166), Expect(2) = 3e-027
Identities = 29/37 (78%), Positives = 32/37 (86%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSA 111
R+Y SLWNADDWAT+GG VK DW+KAPFVASF FSA
Sbjct: 389 RMYTSLWNADDWATRGGLVKTDWTKAPFVASFSNFSA 499
Score = 63.8 bits (133), Expect(2) = 3e-027
Identities = 20/39 (51%), Positives = 31/39 (79%)
Frame = +1 / +2
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+ L ++++WV++ +MIY+YC+D KRFPQG+PAECK
Sbjct: 530 EALDSNQEQKLQWVRKNYMIYDYCSDTKRFPQGLPAECK 646
>gb|BQ697078.1|BQ697078 NXPV_049_B10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_049_B10 5' similar to Arabidopsis
thaliana sequence At3g23730 xyloglucan
endotransglycosylase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 525
Score = 78.5 bits (165), Expect(2) = 3e-027
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 117 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 233
Score = 64.3 bits (134), Expect(2) = 3e-027
Identities = 20/33 (60%), Positives = 29/33 (87%)
Frame = +1 / +3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
+R++WV++ +MIY+YCAD KRFPQG P ECK++
Sbjct: 294 QRLQWVRKNYMIYDYCADTKRFPQGPPPECKIK 392
>gb|BF610287.1|BF610287 NXSI_057_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_057_D08 5' similar to Arabidopsis thaliana
sequence At3g23730 xyloglucan endotransglycosylase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 359
Score = 78.5 bits (165), Expect(2) = 3e-027
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 55 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 171
Score = 64.3 bits (134), Expect(2) = 3e-027
Identities = 20/33 (60%), Positives = 29/33 (87%)
Frame = +1 / +1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECKLR 333
+R++WV++ +MIY+YCAD KRFPQG P ECK++
Sbjct: 232 QRLQWVRKNYMIYDYCADTKRFPQGPPPECKIK 330
>gb|AW869898.1|AW869898 NXNV_122_G11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_122_G11 5' similar to Arabidopsis thaliana
sequence At4g25810 xyloglucan endo-1,4-beta-D-glucanase
(XTR-6) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 606
Score = 81.3 bits (171), Expect(2) = 4e-027
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
++Y+SLWNADDWAT+GG VK DWSKAPFVASFR F+A A
Sbjct: 191 KVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNFNAAA 307
Score = 61.1 bits (127), Expect(2) = 4e-027
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1 / +2
Query: 217 LSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
L ++++WV+ +MIY+YCAD K FPQG+PAECK
Sbjct: 335 LDSNQEQKLQWVRNNYMIYDYCADTKXFPQGLPAECK 445
>dbj|BD236784.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 500
Score = 79.4 bits (167), Expect(2) = 6e-027
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSA 111
R+Y+SLWNADDWAT+GG VK DW+KAPFVASF FSA
Sbjct: 233 RMYSSLWNADDWATRGGLVKTDWTKAPFVASFSNFSA 343
Score = 64.8 bits (135), Expect(2) = 6e-027
Identities = 20/31 (64%), Positives = 29/31 (93%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
++++WV++ +MIY+YCAD KRFPQG+PAECK
Sbjct: 398 QKLQWVRKNYMIYDYCADTKRFPQGLPAECK 490
>gb|BQ696128.1|BQ696128 NXPV_036_F10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_036_F10 5' similar to Arabidopsis
thaliana sequence At5g57560 TCH4 protein (gb|AAA92363.1)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 564
Score = 78.5 bits (165), Expect(2) = 8e-027
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 122 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 238
Score = 62.9 bits (131), Expect(2) = 8e-027
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 299 QRLQWVRKNYMIYDYCADTKRFPQGPPXECK 391
>gb|BG832568.1|BG832568 NXPV_076_F01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_076_F01 5' similar to Arabidopsis
thaliana sequence At5g57560 TCH4 protein (gb|AAA92363.1)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 483
Score = 78.5 bits (165), Expect(2) = 8e-027
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 148 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 264
Score = 62.9 bits (131), Expect(2) = 8e-027
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 325 QRLQWVRKNYMIYDYCADTKRFPQGPPXECK 417
>gb|BX678657.1|BX678657 BX678657 RS Pinus pinaster cDNA clone RS12F10, mRNA sequence
Length = 588
Score = 79.4 bits (167), Expect(3) = 8e-027
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = +1 / +1
Query: 4 LYASLWNADDWATQGGRVKADWSKAPFVASFRGFSA 111
+Y+SLWNADDWAT+GG VK DW+KAPFVASFR FSA
Sbjct: 49 VYSSLWNADDWATRGGLVKTDWTKAPFVASFRNFSA 156
Score = 60.2 bits (125), Expect(3) = 8e-027
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1 / +1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R+ WV++ +MIY+YC D KRFPQG P ECK
Sbjct: 217 QRLEWVRKNYMIYDYCGDTKRFPQGPPPECK 309
Score = 23.5 bits (45), Expect(3) = 8e-027
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2 / +2
Query: 524 LLFQQHRMYKY*VWASKNK*SFSAKQSEPSTHRPPFFPST 643
+LFQ H Y + ++ + SF Q+ + FFP T
Sbjct: 413 ILFQAHMTYSFILFQAHMTYSFILFQTHRKRNFQLFFPIT 532
>gb|CO367102.1|CO367102 RTK1_32_D11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_D11_A029 3', mRNA sequence
Length = 879
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 400 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 516
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 577 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 669
>gb|CV032782.1|CV032782 RTNACL1_18_G05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_G05_A029 3', mRNA sequence
Length = 871
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 392 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 508
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 569 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 661
>gb|DR160605.1|DR160605 RTFE1_7_B07.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_7_B07_A029 3', mRNA sequence
Length = 869
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 503 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 619
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 680 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 772
>gb|CO199765.1|CO199765 GEO2_3_G12.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_3_G12_A032 3', mRNA sequence
Length = 827
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVASF F+A A
Sbjct: 157 RVYSSLWNADDWATRGGLVKTDWTKAPFVASFSNFNAAA 273
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 334 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 426
>gb|CO361939.1|CO361939 NDL2_8_C07.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_C07_A029 3', mRNA sequence
Length = 823
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVASF F+A A
Sbjct: 376 RVYSSLWNADDWATRGGLVKTDWTKAPFVASFSNFNAAA 492
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 553 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 645
>gb|DR056255.1|DR056255 RTCA1_29_C04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_29_C04_A029 3', mRNA sequence
Length = 812
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 390 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 506
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 567 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 659
>gb|DN629845.1|DN629845 EST980661 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTABL24, mRNA sequence
Length = 749
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / -2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 415 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 299
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / -2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 238 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 146
>gb|DN628728.1|DN628728 EST979544 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAB375, mRNA sequence
Length = 746
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 332 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 448
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 509 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 601
>gb|DN631344.1|DN631344 EST982160 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAC820, mRNA sequence
Length = 746
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 332 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 448
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 509 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 601
>gb|DN631607.1|DN631607 EST982423 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACC34, mRNA sequence
Length = 747
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / -3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 415 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 299
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / -3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 238 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 146
>gb|DN632322.1|DN632322 EST983138 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACN19, mRNA sequence
Length = 747
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / -3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 415 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 299
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / -3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 238 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 146
>gb|DN632381.1|DN632381 EST983197 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACO10, mRNA sequence
Length = 746
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 332 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 448
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 509 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 601
>gb|DN633618.1|DN633618 EST984434 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAD936, mRNA sequence
Length = 746
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / -2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 415 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 299
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / -2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 238 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 146
>gb|DN634348.1|DN634348 EST985164 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADL07, mRNA sequence
Length = 746
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 332 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 448
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 509 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 601
>gb|CF673121.1|CF673121 RTCNT1_76_F05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_76_F05_A029 3', mRNA sequence
Length = 716
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 296 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 412
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 473 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 565
>gb|DN631688.1|DN631688 EST982504 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACD60, mRNA sequence
Length = 711
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / -3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 415 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 299
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / -3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 238 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 146
>gb|DN632237.1|DN632237 EST983053 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACL81, mRNA sequence
Length = 711
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / -3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 415 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 299
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / -3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 238 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 146
>gb|DR111723.1|DR111723 RTS1_19_G01.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_19_G01_A029 5', mRNA sequence
Length = 678
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / -1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 444 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 328
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / -1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 267 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 175
>gb|CF673112.1|CF673112 RTCNT1_76_E05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_76_E05_A029 3', mRNA sequence
Length = 676
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 256 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 372
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 433 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 525
>gb|CO159044.1|CO159044 FLD1_11_B01.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_11_B01_A029 3', mRNA sequence
Length = 657
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 219 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 335
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 396 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 488
>gb|DN632279.1|DN632279 EST983095 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACM54, mRNA sequence
Length = 658
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / -1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 415 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 299
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / -1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 238 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 146
>gb|CO196963.1|CO196963 GEO1_3_A02.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_3_A02_A029 3', mRNA sequence
Length = 656
Score = 77.1 bits (162), Expect(2) = 1e-026
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSA 111
R+Y+SLW+ADDWAT+GG VK DW+KAPFVASF FSA
Sbjct: 192 RMYSSLWDADDWATRGGLVKTDWTKAPFVASFSNFSA 302
Score = 63.8 bits (133), Expect(2) = 1e-026
Identities = 20/39 (51%), Positives = 31/39 (79%)
Frame = +1 / +3
Query: 211 QQLSDMSYRRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+ L ++++WV++ +MIY+YC+D KRFPQG+PAECK
Sbjct: 333 EALDSNQEQKLQWVRKNYMIYDYCSDTKRFPQGLPAECK 449
>gb|DN632413.1|DN632413 EST983229 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACO62, mRNA sequence
Length = 629
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / -3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 333 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 217
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / -3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 156 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 64
>gb|CV032719.1|CV032719 RTNACL1_18_A01.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_A01_A029 3', mRNA sequence
Length = 626
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +1
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 178 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 294
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +1
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 355 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 447
>gb|CF391332.1|CF391332 RTDR3_1_G07.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G07_A022 3', mRNA
sequence
Length = 586
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 143 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 259
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 320 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 412
>gb|DR181663.1|DR181663 RTMNUT1_40_F05.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_40_F05_A029 3', mRNA sequence
Length = 570
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 120 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 236
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 297 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 389
>gb|BQ697463.1|BQ697463 NXPV_056_F10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_056_F10 5' similar to Arabidopsis
thaliana sequence At3g23730 xyloglucan
endotransglycosylase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 564
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 122 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 238
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 299 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 391
>gb|BQ695956.1|BQ695956 NXPV_034_G08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_034_G08 5' similar to Arabidopsis
thaliana sequence At3g23730 xyloglucan
endotransglycosylase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 541
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 122 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 238
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 299 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 391
>gb|BI202790.1|BI202790 NXPV_090_E07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_090_E07 5' similar to Arabidopsis
thaliana sequence At3g23730 xyloglucan
endotransglycosylase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 537
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 122 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 238
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 299 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 391
>gb|BQ698435.1|BQ698435 NXPV_069_H02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_069_H02 5' similar to Arabidopsis
thaliana sequence At3g23730 xyloglucan
endotransglycosylase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 474
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 122 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 238
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 299 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 391
>gb|BG832827.1|BG832827 NXPV_081_B10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_081_B10 5' similar to Arabidopsis
thaliana sequence At3g23730 xyloglucan
endotransglycosylase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 456
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 122 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 238
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 299 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 391
>gb|BQ696195.1|BQ696195 NXPV_039_D12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_039_D12 5' similar to Arabidopsis
thaliana sequence At4g14130 xyloglucan
endotransglycosylase-related protein XTR-7 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 455
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +2
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVASF F+A A
Sbjct: 47 RVYSSLWNADDWATRGGLVKTDWTKAPFVASFSNFNAAA 163
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +2
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 224 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 316
>gb|AW289793.1|AW289793 NXNV006F07F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006F07 5', mRNA sequence
Length = 448
Score = 78.5 bits (165), Expect(2) = 1e-026
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +1 / +3
Query: 1 RLYASLWNADDWATQGGRVKADWSKAPFVASFRGFSADA 117
R+Y+SLWNADDWAT+GG VK DW+KAPFVAS R F+A A
Sbjct: 63 RVYSSLWNADDWATRGGLVKTDWTKAPFVASLRNFNAAA 179
Score = 62.5 bits (130), Expect(2) = 1e-026
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +1 / +3
Query: 235 RRMRWVQRKFMIYNYCADAKRFPQGVPAECK 327
+R++WV++ +MIY+YCAD KRFPQG P ECK
Sbjct: 240 QRLQWVRKNYMIYDYCADTKRFPQGPPPECK 332
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 458,329,796
Number of Sequences: 355925
Number of extensions: 6211949
Number of successful extensions: 35208
Number of sequences better than 1.0e-020: 140
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 18371669960
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)