TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131612.2.1
(620 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed... 172 2e-042
gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch... 172 2e-042
gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus ni... 172 2e-042
gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library P... 171 3e-042
gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compr... 166 9e-041
gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clon... 164 6e-040
gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pin... 164 6e-040
gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus adde... 164 6e-040
gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pin... 163 1e-039
gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pin... 161 3e-039
gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pin... 161 3e-039
gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clon... 158 4e-038
gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus adde... 154 5e-037
gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side ... 142 3e-033
gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed... 138 5e-032
gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus adde... 133 8e-031
gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus ni... 128 3e-029
gb|BF049746.1|BF049746 NXCI_106_F09_F NXCI (Nsf Xylem Compr... 128 4e-029
gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magn... 121 4e-027
gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magn... 121 4e-027
gb|CD021034.1|CD021034 NXNV_126_G03_F Nsf Xylem Normal wood... 102 3e-021
>gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_G03_A022 5', mRNA sequence
Length = 773
Score = 172 bits (370), Expect = 2e-042
Identities = 71/100 (71%), Positives = 81/100 (81%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F C LAFMPTGW LL IAQA RP+ + G S+++LARGYE +MGLLLFTP+A LAWF
Sbjct: 347 LFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVAILAWF 526
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTR+LFNQAFSRGLQISRIL G KKD + S E*
Sbjct: 527 PFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE* 646
>gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_39_G06_A034 5', mRNA sequence
Length = 683
Score = 172 bits (370), Expect = 2e-042
Identities = 71/100 (71%), Positives = 81/100 (81%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F C LAFMPTGW LL IAQA RP+ + G S+++LARGYE +MGLLLFTP+A LAWF
Sbjct: 562 LFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVAILAWF 383
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTR+LFNQAFSRGLQISRIL G KKD + S E*
Sbjct: 382 PFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE* 263
>gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_28_H03_A029 3', mRNA sequence
Length = 692
Score = 172 bits (370), Expect = 2e-042
Identities = 71/100 (71%), Positives = 81/100 (81%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F C LAFMPTGW LL IAQA RP+ + G S+++LARGYE +MGLLLFTP+A LAWF
Sbjct: 20 LFACFLAFMPTGWALLQIAQACRPLYNRTGFLESVRSLARGYEYIMGLLLFTPVAILAWF 199
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
PFVSEFQTR+LFNQAFSRGLQISRIL G KKD + S E*
Sbjct: 200 PFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE* 319
>gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 675
Score = 171 bits (369), Expect = 3e-042
Identities = 66/88 (75%), Positives = 76/88 (86%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F CILAFMPTGW +L IAQ +P + +IG WGS++ALARGYE +MGLLLF P+A LAWF
Sbjct: 409 LFACILAFMPTGWAILQIAQTCKPFVHRIGFWGSVRALARGYEFIMGLLLFAPVAVLAWF 588
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGG 266
PFVSEFQTR+LFNQAFSRGLQISRIL G
Sbjct: 589 PFVSEFQTRLLFNQAFSRGLQISRILAG 672
>gb|BF221028.1|BF221028 NXCI_162_C02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_162_C02 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 381
Score = 166 bits (358), Expect = 9e-041
Identities = 67/95 (70%), Positives = 77/95 (81%)
Frame = +3 / +1
Query: 18 LAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSE 197
LAFMPTGW +L IAQ + + +IG WGS++ALARGYE +MGLLLF PIA LAWFPFVSE
Sbjct: 1 LAFMPTGWAILQIAQTCKSFVHRIGFWGSVRALARGYEFIMGLLLFAPIAVLAWFPFVSE 180
Query: 198 FQTRMLFNQAFSRGLQISRILGGHKKDRGTRSKE* 302
FQTR+LFNQ F GLQISRIL G KKD ++SKE*
Sbjct: 181 FQTRLLFNQXFXXGLQISRILAGRKKDWSSKSKE* 285
>gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clone RS15C01, mRNA sequence
Length = 488
Score = 164 bits (352), Expect = 6e-040
Identities = 65/90 (72%), Positives = 73/90 (81%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F C LAFMPTGW L IA A RP++Q G W S++ALAR Y+ +MGLLLFTP+A LAWF
Sbjct: 101 LFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPVAILAWF 280
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PFVSEFQTR LFNQAFSRGLQISRIL G K
Sbjct: 281 PFVSEFQTRFLFNQAFSRGLQISRILAGRK 370
>gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 3', mRNA sequence
Length = 769
Score = 164 bits (352), Expect = 6e-040
Identities = 64/90 (71%), Positives = 74/90 (82%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F C LAFMPTGW L IA A RP++Q+ G W S++ALAR Y+ +MGL+LFTP+A LAWF
Sbjct: 130 LFACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWF 309
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PFVSEFQTR LFNQAFSRGLQISRIL G K
Sbjct: 310 PFVSEFQTRFLFNQAFSRGLQISRILAGRK 399
>gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 5', mRNA sequence
Length = 804
Score = 164 bits (352), Expect = 6e-040
Identities = 64/90 (71%), Positives = 74/90 (82%)
Frame = +3 / +1
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F C LAFMPTGW L IA A RP++Q+ G W S++ALAR Y+ +MGL+LFTP+A LAWF
Sbjct: 127 LFACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWF 306
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PFVSEFQTR LFNQAFSRGLQISRIL G K
Sbjct: 307 PFVSEFQTRFLFNQAFSRGLQISRILAGRK 396
>gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 3', mRNA sequence
Length = 760
Score = 163 bits (350), Expect = 1e-039
Identities = 64/89 (71%), Positives = 73/89 (82%)
Frame = +3 / +1
Query: 6 FVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFP 185
F C LAFMPTGW L IA A RP++Q+ G W S++ALAR Y+ +MGL+LFTP+A LAWFP
Sbjct: 1 FACFLAFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFP 180
Query: 186 FVSEFQTRMLFNQAFSRGLQISRILGGHK 272
FVSEFQTR LFNQAFSRGLQISRIL G K
Sbjct: 181 FVSEFQTRFLFNQAFSRGLQISRILAGRK 267
>gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 3', mRNA sequence
Length = 820
Score = 161 bits (347), Expect = 3e-039
Identities = 66/92 (71%), Positives = 75/92 (81%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+FVC LAFMPTGW L IA A RP+ + GLW S++ALAR YE +MGL LFTP+A LAWF
Sbjct: 60 LFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSYEYVMGLHLFTPVAILAWF 239
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKD 278
PFVSEFQ+R+LFNQAFSRGLQISRIL G K D
Sbjct: 240 PFVSEFQSRLLFNQAFSRGLQISRILTGRK*D 335
>gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 5', mRNA sequence
Length = 501
Score = 161 bits (347), Expect = 3e-039
Identities = 66/92 (71%), Positives = 75/92 (81%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+FVC LAFMPTGW L IA A RP+ + GLW S++ALAR YE +MGL LFTP+A LAWF
Sbjct: 68 LFVCFLAFMPTGWAFLQIALACRPLFECCGLWDSVRALARSYEYVMGLHLFTPVAILAWF 247
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHKKD 278
PFVSEFQ+R+LFNQAFSRGLQISRIL G K D
Sbjct: 248 PFVSEFQSRLLFNQAFSRGLQISRILTGRK*D 343
>gb|BX678600.1|BX678600 BX678600 RS Pinus pinaster cDNA clone RS11G06, mRNA sequence
Length = 551
Score = 158 bits (339), Expect = 4e-038
Identities = 63/90 (70%), Positives = 71/90 (78%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F C LAFMPTGW L IA A RP++Q G W S++ALAR Y+ +MGLLLFTP+A LAWF
Sbjct: 93 LFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPVAILAWF 272
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PFVSEFQTR LFNQAFSRGL SRIL G K
Sbjct: 273 PFVSEFQTRFLFNQAFSRGLXNSRILAGRK 362
>gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 3', mRNA sequence
Length = 806
Score = 154 bits (331), Expect = 5e-037
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +3 / +1
Query: 21 AFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEF 200
AFMPTGW L IA A RP++Q+ G W S++ALAR Y+ +MGL+LFTP+A LAWFPFVSEF
Sbjct: 1 AFMPTGWAFLQIALACRPLLQRAGFWDSVRALARSYDYVMGLVLFTPVAILAWFPFVSEF 180
Query: 201 QTRMLFNQAFSRGLQISRILGGHK 272
QTR LFNQAFSRGLQISRIL G K
Sbjct: 181 QTRFLFNQAFSRGLQISRILAGRK 252
>gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_002_B01 5' similar to Arabidopsis thaliana
sequence At5g13000 callose synthase catalytic subunit
-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 447
Score = 142 bits (304), Expect = 3e-033
Identities = 57/73 (78%), Positives = 65/73 (89%)
Frame = +3 / +1
Query: 84 KIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILG 263
+IG WGS++ALARGYE +MGLLLF P+A LAWFPFVSEFQTR+LFNQAFSRGLQISRIL
Sbjct: 1 RIGFWGSVRALARGYEFIMGLLLFAPVAVLAWFPFVSEFQTRLLFNQAFSRGLQISRILA 180
Query: 264 GHKKDRGTRSKE* 302
G KKD ++SKE*
Sbjct: 181 GRKKDWSSKSKE* 219
>gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_B01_A021 3', mRNA sequence
Length = 559
Score = 138 bits (295), Expect = 5e-032
Identities = 51/90 (56%), Positives = 73/90 (81%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGWG+L +A A +P+++++GLW SI++L R Y+ MG+++F P+A +W
Sbjct: 9 VFASILAFIPTGWGILCLAIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVALCSWL 188
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PFVS FQTR++FNQAFSRGL+IS IL G+K
Sbjct: 189 PFVSTFQTRLMFNQAFSRGLEISLILAGNK 278
>gb|DR048150.1|DR048150 RTBOR1_6_H10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_H10_A029 5', mRNA sequence
Length = 691
Score = 133 bits (286), Expect = 8e-031
Identities = 53/90 (58%), Positives = 70/90 (77%)
Frame = +3 / -2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+F ILAF+PTGW ++ +A + V++ +GLW S+ A+AR Y+ MG+LLF PI L+WF
Sbjct: 609 LFASILAFVPTGWLIICLAITWKSVVKSLGLWKSVSAIARFYDAGMGILLFIPIVVLSWF 430
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
PFVS FQTR+LFNQAFSRGL+IS IL G+K
Sbjct: 429 PFVSTFQTRLLFNQAFSRGLEISLILAGNK 340
>gb|DR060360.1|DR060360 RTNIT1_27_G11.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_27_G11_A029 3', mRNA sequence
Length = 569
Score = 128 bits (275), Expect = 3e-029
Identities = 47/84 (55%), Positives = 68/84 (80%)
Frame = +3 / +2
Query: 21 AFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSEF 200
AF+PTGWG+L + A +P+++++GLW SI++L R Y+ MG+++F P+A +W PFVS F
Sbjct: 2 AFIPTGWGILCLGIAWKPIVKRLGLWKSIRSLGRLYDAGMGMIVFIPVAMCSWLPFVSTF 181
Query: 201 QTRMLFNQAFSRGLQISRILGGHK 272
QTR++FNQAFSRGL+IS IL G+K
Sbjct: 182 QTRLMFNQAFSRGLEISLILAGNK 253
>gb|BF049746.1|BF049746 NXCI_106_F09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_106_F09 5' similar to Arabidopsis
thaliana sequence At2g31960 glucan synthase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 213
Score = 128 bits (274), Expect = 4e-029
Identities = 49/71 (69%), Positives = 57/71 (80%)
Frame = +3 / +1
Query: 18 LAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWFPFVSE 197
LAFMPTGW +L IAQ + + +IG WGS++ALARGYE +MGLLLF P A LAWFPFVSE
Sbjct: 1 LAFMPTGWAILQIAQTCKXFVHRIGFWGSVRALARGYEFIMGLLLFAPXAVLAWFPFVSE 180
Query: 198 FQTRMLFNQAF 230
FQTR+LFN F
Sbjct: 181 FQTRLLFNXXF 213
>gb|DR117496.1|DR117496 RTMG1_7_G10.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 3', mRNA sequence
Length = 872
Score = 121 bits (259), Expect = 4e-027
Identities = 47/90 (52%), Positives = 65/90 (72%)
Frame = +3 / +2
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ +LA MPTGWGL+ IAQ +RP++Q +W + A+AR YE++ G+++ P+A L+W
Sbjct: 341 LITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIPVALLSWL 520
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
P QTR+LFN+AFSRGLQISRIL G K
Sbjct: 521 PGFQTLQTRILFNEAFSRGLQISRILVGKK 610
>gb|DR117586.1|DR117586 RTMG1_7_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G10_A029 5', mRNA sequence
Length = 763
Score = 121 bits (259), Expect = 4e-027
Identities = 47/90 (52%), Positives = 65/90 (72%)
Frame = +3 / +3
Query: 3 IFVCILAFMPTGWGLLLIAQAIRPVIQKIGLWGSIKALARGYEILMGLLLFTPIAFLAWF 182
+ +LA MPTGWGL+ IAQ +RP++Q +W + A+AR YE++ G+++ P+A L+W
Sbjct: 474 LITSVLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIPVALLSWL 653
Query: 183 PFVSEFQTRMLFNQAFSRGLQISRILGGHK 272
P QTR+LFN+AFSRGLQISRIL G K
Sbjct: 654 PGFQTLQTRILFNEAFSRGLQISRILVGKK 743
>gb|CD021034.1|CD021034 NXNV_126_G03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_126_G03 5' similar to Arabidopsis thaliana
sequence At1g05570 putative glucan synthase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 171
Score = 102 bits (217), Expect = 3e-021
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = +3 / +2
Query: 102 SIKALARGYEILMGLLLFTPIAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGG 266
S++ALARGYE +MGLLLF P+A LAWFPFVSEFQTR+LFN FS GL SRIL G
Sbjct: 2 SVRALARGYEFIMGLLLFAPVAVLAWFPFVSEFQTRLLFNXXFSXGLXXSRILAG 166
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 346,399,540
Number of Sequences: 355925
Number of extensions: 5146738
Number of successful extensions: 51732
Number of sequences better than 1.0e-020: 27
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8412403350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)