TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.3
(687 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA ... 215 3e-055
gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciat... 215 3e-055
gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clon... 215 3e-055
gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus ad... 215 3e-055
gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus ad... 215 3e-055
gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch... 215 3e-055
gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch... 215 3e-055
gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch... 213 1e-054
gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone lib... 211 3e-054
gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root w... 202 2e-051
gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control ... 113 3e-046
gb|AL749842.1|AL749842 AL749842 AS Pinus pinaster cDNA clon... 144 4e-034
gb|BF778981.1|BF778981 NXSI_091_F11_F NXSI (Nsf Xylem Side ... 143 1e-033
gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus adde... 104 4e-033
gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus adde... 104 4e-033
gb|AL749805.1|AL749805 AL749805 AS Pinus pinaster cDNA clon... 73 7e-027
gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Ve... 117 6e-026
gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Ver... 117 6e-026
>gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA clone 2N8E, mRNA sequence
Length = 719
Score = 215 bits (463), Expect = 3e-055
Identities = 90/95 (94%), Positives = 92/95 (96%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 136 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 315
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 316 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 420
Score = 155 bits (334), Expect = 2e-037
Identities = 70/93 (75%), Positives = 75/93 (80%)
Frame = +2 / -1
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL T+MTESP RNILLMNLSL TG AFFLPLPV GTSVHIS TFS TMLQ S A
Sbjct: 413 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 234
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 233 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 135
Score = 105 bits (223), Expect = 4e-022
Identities = 48/108 (44%), Positives = 70/108 (64%)
Frame = +1 / -3
Query: 280 PVGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAI 459
P+ SL + ++++DRV+ ++H ADE ILV R S L A L +LCPH +L++HV V I
Sbjct: 423 PIC*SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLCPHFFDILQNHVAVPI 244
Query: 460 KSTNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILV 603
K +N K+L VV+AID+NL +V + HH +R +FL L L +LV
Sbjct: 243 KCSNSPKKLFVVSAIDQNLCIVFHAHHENRKRTSIEFLLL*LLRQVLV 100
>gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP001F10, mRNA sequence
Length = 665
Score = 215 bits (463), Expect = 3e-055
Identities = 90/95 (94%), Positives = 92/95 (96%)
Frame = -1 / -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 614 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 435
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 434 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 330
Score = 154 bits (331), Expect = 6e-037
Identities = 70/93 (75%), Positives = 74/93 (79%)
Frame = +2 / +1
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL T+MTESP RNILLMNLSL TG AFFLPLPV GTSVHIS TFS TMLQ S A
Sbjct: 337 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 516
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRP SFLL QL+RT VLF TLI+ T RGPVLN
Sbjct: 517 TRPRSFLLFLQLIRTCVLFFTLIMRTXRGPVLN 615
Score = 101 bits (216), Expect = 4e-021
Identities = 47/108 (43%), Positives = 69/108 (63%)
Frame = +1 / +3
Query: 280 PVGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAI 459
P+ SL + ++++DRV+ ++H ADE ILV R S L A L +L PH +L++HV V I
Sbjct: 327 PIC*SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLRPHFFDILQNHVAVPI 506
Query: 460 KSTNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILV 603
K +N K+L VV+AID+NL +V +THH R +FL L L +L+
Sbjct: 507 KCSNSPKKLFVVSAIDQNLCIVFHTHHENRXRTSIEFLLL*LSRAVLI 650
>gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clone RS11G12, mRNA sequence
Length = 608
Score = 215 bits (463), Expect = 3e-055
Identities = 90/95 (94%), Positives = 92/95 (96%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 152 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 331
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 332 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 436
Score = 155 bits (334), Expect = 2e-037
Identities = 70/93 (75%), Positives = 75/93 (80%)
Frame = +2 / -3
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL T+MTESP RNILLMNLSL TG AFFLPLPV GTSVHIS TFS TMLQ S A
Sbjct: 429 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 250
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 249 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 151
Score = 101 bits (215), Expect = 6e-021
Identities = 47/108 (43%), Positives = 70/108 (64%)
Frame = +1 / -2
Query: 280 PVGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAI 459
P+ SL + ++++DRV+ ++H ADE ILV R S L A L +L PH +L++HV V I
Sbjct: 439 PIC*SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLRPHFFDILQNHVAVPI 260
Query: 460 KSTNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILV 603
K +N K+L VV+AID+NL +V +THH +R +FL L L +L+
Sbjct: 259 KCSNSPKKLFVVSAIDQNLCIVFHTHHENRKRTSIEFLLL*LLRQVLI 116
>gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 3', mRNA sequence
Length = 723
Score = 215 bits (463), Expect = 3e-055
Identities = 90/95 (94%), Positives = 92/95 (96%)
Frame = -1 / +3
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 135 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 314
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 315 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 419
Score = 155 bits (334), Expect = 2e-037
Identities = 70/93 (75%), Positives = 75/93 (80%)
Frame = +2 / -3
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL T+MTESP RNILLMNLSL TG AFFLPLPV GTSVHIS TFS TMLQ S A
Sbjct: 412 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 233
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 232 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 134
Score = 107 bits (228), Expect = 9e-023
Identities = 49/108 (45%), Positives = 71/108 (65%)
Frame = +1 / -2
Query: 280 PVGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAI 459
P+ SL + ++++DRV+ ++H ADE ILV R S L A L +LCPH +L++HV V I
Sbjct: 422 PIC*SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLCPHFFDILQNHVAVPI 243
Query: 460 KSTNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILV 603
K +N K+L VV+AID+NL +V +THH +R +FL L L +LV
Sbjct: 242 KCSNSPKKLFVVSAIDQNLCIVFHTHHENRKRTSIEFLLL*LLRQVLV 99
>gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 5', mRNA sequence
Length = 712
Score = 215 bits (463), Expect = 3e-055
Identities = 90/95 (94%), Positives = 92/95 (96%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 104 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 283
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 284 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 388
Score = 155 bits (334), Expect = 2e-037
Identities = 70/93 (75%), Positives = 75/93 (80%)
Frame = +2 / -2
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL T+MTESP RNILLMNLSL TG AFFLPLPV GTSVHIS TFS TMLQ S A
Sbjct: 381 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 202
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 201 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 103
Score = 107 bits (228), Expect = 9e-023
Identities = 49/108 (45%), Positives = 71/108 (65%)
Frame = +1 / -1
Query: 280 PVGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAI 459
P+ SL + ++++DRV+ ++H ADE ILV R S L A L +LCPH +L++HV V I
Sbjct: 391 PIC*SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLCPHFFDILQNHVAVPI 212
Query: 460 KSTNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILV 603
K +N K+L VV+AID+NL +V +THH +R +FL L L +LV
Sbjct: 211 KCSNSPKKLFVVSAIDQNLCIVFHTHHENRKRTSIEFLLL*LLRQVLV 68
>gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 3', mRNA sequence
Length = 853
Score = 215 bits (463), Expect = 3e-055
Identities = 90/95 (94%), Positives = 92/95 (96%)
Frame = -1 / -3
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 446 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 267
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 266 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 162
Score = 155 bits (334), Expect = 2e-037
Identities = 70/93 (75%), Positives = 75/93 (80%)
Frame = +2 / +1
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL T+MTESP RNILLMNLSL TG AFFLPLPV GTSVHIS TFS TMLQ S A
Sbjct: 169 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 348
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 349 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 447
Score = 105 bits (225), Expect = 2e-022
Identities = 48/108 (44%), Positives = 71/108 (65%)
Frame = +1 / +3
Query: 280 PVGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAI 459
P+ SL + ++++DRV+ ++H ADE ILV+R S L A L +LCPH +L++HV V I
Sbjct: 159 PIC*SLWISKNNNDRVSTKKHFADEPILVNRLSFLLAFTCLWNLCPHFFDILQNHVAVPI 338
Query: 460 KSTNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILV 603
K +N K+L VV+AID+NL +V + HH +R +FL L L +LV
Sbjct: 339 KCSNSPKKLFVVSAIDQNLCIVFHAHHENRKRTSIEFLLL*LLRQVLV 482
>gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 5', mRNA sequence
Length = 913
Score = 215 bits (463), Expect = 3e-055
Identities = 90/95 (94%), Positives = 92/95 (96%)
Frame = -1 / -1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 535 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 356
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 355 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 251
Score = 155 bits (334), Expect = 2e-037
Identities = 70/93 (75%), Positives = 75/93 (80%)
Frame = +2 / +3
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL T+MTESP RNILLMNLSL TG AFFLPLPV GTSVHIS TFS TMLQ S A
Sbjct: 258 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 437
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 438 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 536
Score = 105 bits (225), Expect = 2e-022
Identities = 48/108 (44%), Positives = 71/108 (65%)
Frame = +1 / +2
Query: 280 PVGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAI 459
P+ SL + ++++DRV+ ++H ADE ILV+R S L A L +LCPH +L++HV V I
Sbjct: 248 PIC*SLWISKNNNDRVSTKKHFADEPILVNRLSFLLAFTCLWNLCPHFFDILQNHVAVPI 427
Query: 460 KSTNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILV 603
K +N K+L VV+AID+NL +V + HH +R +FL L L +LV
Sbjct: 428 KCSNSPKKLFVVSAIDQNLCIVFHAHHENRKRTSIEFLLL*LLRQVLV 571
>gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_A11_A034 3', mRNA sequence
Length = 811
Score = 213 bits (459), Expect = 1e-054
Identities = 89/95 (93%), Positives = 91/95 (95%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 224 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 403
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
KKKA PVNKDRFISKMFLRGDSVIIV RNPK* N
Sbjct: 404 KKKAQPVNKDRFISKMFLRGDSVIIVFRNPK*LTN 508
Score = 156 bits (335), Expect = 2e-037
Identities = 70/93 (75%), Positives = 75/93 (80%)
Frame = +2 / -2
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL T+MTESP RNILLMNLSL TG AFFLPLPV GTSVHIS TFS TMLQ S A
Sbjct: 501 NHFGFLKTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 322
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 321 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 223
Score = 105 bits (225), Expect = 2e-022
Identities = 48/108 (44%), Positives = 71/108 (65%)
Frame = +1 / -1
Query: 280 PVGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAI 459
P+ SL + ++++DRV+ ++H ADE ILV+R S L A L +LCPH +L++HV V I
Sbjct: 511 PIC*SLWISKNNNDRVSTKKHFADEPILVNRLSFLLAFTCLWNLCPHFFDILQNHVAVPI 332
Query: 460 KSTNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILV 603
K +N K+L VV+AID+NL +V + HH +R +FL L L +LV
Sbjct: 331 KCSNSPKKLFVVSAIDQNLCIVFHAHHENRKRTSIEFLLL*LLRQVLV 188
>gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC23B03, mRNA sequence
Length = 589
Score = 211 bits (456), Expect = 3e-054
Identities = 89/95 (93%), Positives = 91/95 (95%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSV MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 160 FNTGPLSVPMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 339
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
KKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 340 KKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 444
Score = 156 bits (335), Expect = 2e-037
Identities = 70/93 (75%), Positives = 75/93 (80%)
Frame = +2 / -3
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+H GFL T+MTESP RNILLMNLSL TG AFFLPLPV GTSVHIS TFS TMLQ S A
Sbjct: 437 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 258
Query: 470 TRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TRP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 257 TRPRSFLLFLQLIRTCVLFFTLIMGTERGPVLN 159
Score = 105 bits (223), Expect = 4e-022
Identities = 48/108 (44%), Positives = 70/108 (64%)
Frame = +1 / -2
Query: 280 PVGRSLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAI 459
P+ SL + ++++DRV+ ++H ADE ILV R S L A L +LCPH +L++HV V I
Sbjct: 447 PIC*SLWISKNNNDRVSTKKHFADEPILVDRLSFLLAFTCLWNLCPHFFDILQNHVAVPI 268
Query: 460 KSTNPAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILV 603
K +N K+L VV+AID+NL +V + HH +R +FL L L +LV
Sbjct: 267 KCSNSPKKLFVVSAIDQNLCIVFHAHHGNRKRTSIEFLLL*LLRQVLV 124
>gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV061_D02 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 548
Score = 202 bits (436), Expect = 2e-051
Identities = 85/95 (89%), Positives = 87/95 (91%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+EMWTEVPKTGKG
Sbjct: 202 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKG 381
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
KKKA PVN RFI FLRGDSVIIVLRNPK* N
Sbjct: 382 KKKAQPVNXXRFIXXXFLRGDSVIIVLRNPK*XTN 486
Score = 144 bits (309), Expect = 6e-034
Identities = 65/92 (70%), Positives = 69/92 (75%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFL T+MTESP RN MNL TG AFFLPLPV GTSVHIS TFS TMLQ S A T
Sbjct: 476 HFGFLRTIMTESPRRNXXXMNLXXLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 297
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 296 RPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 201
>gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_C06_A029 5', mRNA sequence
Length = 642
Score = 113 bits (242), Expect(3) = 3e-046
Identities = 46/48 (95%), Positives = 48/48 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 424
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 206 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 349
Score = 88.1 bits (186), Expect(3) = 3e-046
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = -1 / +3
Query: 405 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 372 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 494
Score = 73.9 bits (155), Expect(2) = 1e-028
Identities = 31/39 (79%), Positives = 33/39 (84%)
Frame = +2 / -3
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 406
+H GFL T+MTESP RNILLMNLSL TG AFFLPLPV G
Sbjct: 487 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFG 371
Score = 72.5 bits (152), Expect(2) = 1e-028
Identities = 33/47 (70%), Positives = 36/47 (76%)
Frame = +2 / -1
Query: 428 TFSSTMLQWRSKARTRPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
TFS TMLQ S A TRP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 345 TFSKTMLQCLSNALTRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 205
Score = 22.1 bits (42), Expect(3) = 3e-046
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1 / +2
Query: 420 MWTEVPK 400
MWTEVPK
Sbjct: 356 MWTEVPK 376
>gb|AL749842.1|AL749842 AL749842 AS Pinus pinaster cDNA clone AS01G04 similar to SNRP, mRNA
sequence
Length = 616
Score = 144 bits (310), Expect = 4e-034
Identities = 60/71 (84%), Positives = 66/71 (92%)
Frame = -1 / -2
Query: 495 NNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVI 316
N KKLLGRV+AF RHC+MVLENV++MW+EVPKTGKG+KKA PVNKDRFISKMFLRGDSVI
Sbjct: 534 NTKKLLGRVKAFYRHCHMVLENVKKMWSEVPKTGKGQKKAQPVNKDRFISKMFLRGDSVI 355
Query: 315 IVLRNPK*SPN 283
IVLRNPK* N
Sbjct: 354 IVLRNPK*LTN 322
Score = 103 bits (220), Expect = 1e-021
Identities = 48/68 (70%), Positives = 51/68 (75%)
Frame = +2 / +2
Query: 290 DHLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKAR 469
+HLGFL T+MTESP RNILLMNLSL TG AFF PLPVLGTS HI TFS TM Q A
Sbjct: 329 NHLGFLRTIMTESPRRNILLMNLSLLTG*AFFWPLPVLGTSDHIFLTFSKTMWQCL*NAL 508
Query: 470 TRPSSFLL 493
TRP SF +
Sbjct: 509 TRPRSFFV 532
>gb|BF778981.1|BF778981 NXSI_091_F11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_091_F11 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 361
Score = 143 bits (307), Expect = 1e-033
Identities = 59/68 (86%), Positives = 61/68 (89%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFD HCNMVLENV+EMWT PKTGK
Sbjct: 158 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDXHCNMVLENVKEMWTXXPKTGKX 337
Query: 387 KKKALPVN 364
KKA VN
Sbjct: 338 XKKAXXVN 361
>gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 3', mRNA sequence
Length = 571
Score = 104 bits (222), Expect(2) = 4e-033
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = -1 / +3
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 400
S GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 96 SQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK 260
Score = 57.0 bits (118), Expect(2) = 4e-033
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -1 / +3
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVLRN 301
K PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 264 KNKKPVNKDRFISKMFLRGDSVILILRN 347
>gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 5', mRNA sequence
Length = 536
Score = 104 bits (222), Expect(2) = 4e-033
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = -1 / +1
Query: 564 STGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 400
S GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLENV+EMWTE+PK
Sbjct: 64 SQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK 228
Score = 57.0 bits (118), Expect(2) = 4e-033
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -1 / +1
Query: 384 KKALPVNKDRFISKMFLRGDSVIIVLRN 301
K PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 232 KNKKPVNKDRFISKMFLRGDSVILILRN 315
>gb|AL749805.1|AL749805 AL749805 AS Pinus pinaster cDNA clone AS01C06 similar to SNRP, mRNA
sequence
Length = 618
Score = 73.5 bits (154), Expect(2) = 7e-027
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = -1 / -3
Query: 402 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
K K KKKA PVNKDRFIS+MFLRGDSVIIVLRNPK* N
Sbjct: 442 KQVKAKKKAQPVNKDRFISQMFLRGDSVIIVLRNPK*LTN 323
Score = 67.0 bits (140), Expect(2) = 7e-027
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = -1 / -2
Query: 489 KKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 376
K LG ++ HCNMVLENV++MW EVPKTGKGKKK+
Sbjct: 530 KSFLGELKHLIGHCNMVLENVKKMWAEVPKTGKGKKKS 417
>gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5', mRNA sequence
Length = 380
Score = 117 bits (251), Expect = 6e-026
Identities = 50/54 (92%), Positives = 51/54 (94%)
Frame = -1 / +3
Query: 444 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
MVLENV+EMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 3 MVLENVKEMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 164
>gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5' similar to Arabidopsis thaliana sequence
At3g62840 small nuclear ribonucleoprotein-like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 117 bits (251), Expect = 6e-026
Identities = 50/54 (92%), Positives = 51/54 (94%)
Frame = -1 / +3
Query: 444 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 283
MVLENV+EMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 3 MVLENVKEMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 164
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 357,769,321
Number of Sequences: 355925
Number of extensions: 4969128
Number of successful extensions: 40282
Number of sequences better than 1.0e-020: 26
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9489505520
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)