TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.11
(514 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ197167.1|BQ197167 NXLV110_C11_F NXLV (Nsf Xylem Late w... 107 6e-023
gb|CR392485.1|CR392485 CR392485 RN Pinus pinaster cDNA clon... 107 6e-023
gb|AW064862.1|AW064862 ST36G02 Pine TriplEx shoot tip libra... 106 8e-023
gb|AL750057.1|AL750057 AL750057 AS Pinus pinaster cDNA clon... 106 8e-023
gb|AL750066.1|AL750066 AL750066 AS Pinus pinaster cDNA clon... 106 8e-023
gb|AL750433.1|AL750433 AL750433 RN Pinus pinaster cDNA clon... 106 8e-023
gb|BX250562.1|BX250562 BX250562 Pinus pinaster differenciat... 106 8e-023
gb|BX253067.1|BX253067 BX253067 Pinus pinaster differenciat... 106 8e-023
gb|BX253197.1|BX253197 BX253197 Pinus pinaster differenciat... 106 8e-023
gb|BX254128.1|BX254128 BX254128 Pinus pinaster differenciat... 106 8e-023
gb|BX254430.1|BX254430 BX254430 Pinus pinaster differenciat... 106 8e-023
gb|BX255376.1|BX255376 BX255376 Pinus pinaster differenciat... 106 8e-023
gb|BE496472.1|BE496472 NXCI_018_E06_F NXCI (Nsf Xylem Compr... 106 8e-023
gb|BF220655.1|BF220655 NXCI_151_B08_F NXCI (Nsf Xylem Compr... 106 8e-023
gb|BF777488.1|BF777488 NXSI_069_B08_F NXSI (Nsf Xylem Side ... 106 8e-023
gb|BG040067.1|BG040067 NXSI_106_A02_F NXSI (Nsf Xylem Side ... 106 8e-023
gb|BG275893.1|BG275893 NXSI_149_B12_F NXSI (Nsf Xylem Side ... 106 8e-023
gb|BM427978.1|BM427978 NXRV_007_B01_F NXRV (Nsf Xylem Root ... 106 8e-023
gb|BM427981.1|BM427981 NXRV_007_B07_F NXRV (Nsf Xylem Root ... 106 8e-023
gb|BM493839.1|BM493839 NXLV_070_C06_F NXLV (Nsf Xylem Late ... 106 8e-023
gb|BQ701602.1|BQ701602 NXSI_111_E05_F NXSI (Nsf Xylem Side ... 106 8e-023
gb|BX682309.2|BX682309 BX682309 Pinus pinaster differenciat... 106 8e-023
gb|DN627179.1|DN627179 EST977995 Subtracted pine embryo lib... 106 8e-023
gb|DN633772.1|DN633772 EST984588 Subtracted pine embryo lib... 106 8e-023
gb|AA739750.1|AA739750 515 PtIFG2 Pinus taeda cDNA clone 88... 106 1e-022
gb|BX253596.1|BX253596 BX253596 Pinus pinaster differenciat... 106 1e-022
gb|BM492562.1|BM492562 NXRV_028_B03_F NXRV (Nsf Xylem Root ... 105 2e-022
gb|DR686678.1|DR686678 EST1076756 Normalized pine embryo li... 104 4e-022
gb|DN627075.1|DN627075 EST977891 Subtracted pine embryo lib... 104 6e-022
gb|DN632513.1|DN632513 EST983329 Subtracted pine embryo lib... 104 6e-022
gb|DN633693.1|DN633693 EST984509 Subtracted pine embryo lib... 104 6e-022
gb|DN633894.1|DN633894 EST984710 Subtracted pine embryo lib... 104 6e-022
gb|DR744296.1|DR744296 RTCU1_21_B11.g1_A029 Roots plus adde... 103 1e-021
>gb|BQ197167.1|BQ197167 NXLV110_C11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV110_C11 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 640
Score = 107 bits (228), Expect = 6e-023
Identities = 43/70 (61%), Positives = 52/70 (74%)
Frame = +3 / +3
Query: 45 NHKNPKRRRTIRCSRSSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDP 224
+H + R +++ ++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDP
Sbjct: 30 SHSRSEXXSVARSLQTNCC*TQKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDP 209
Query: 225 KFLRNLRYSR 254
KFLRN RY+R
Sbjct: 210 KFLRNQRYAR 239
>gb|CR392485.1|CR392485 CR392485 RN Pinus pinaster cDNA clone RN33A11, mRNA sequence
Length = 523
Score = 107 bits (228), Expect = 6e-023
Identities = 43/70 (61%), Positives = 51/70 (72%)
Frame = +3 / +2
Query: 45 NHKNPKRRRTIRCSRSSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDP 224
+H + R + + ++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDP
Sbjct: 47 SHSRSEEEPVARSLQKNCC*TQKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDP 226
Query: 225 KFLRNLRYSR 254
KFLRN RY+R
Sbjct: 227 KFLRNQRYAR 256
>gb|AW064862.1|AW064862 ST36G02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST36G02, mRNA sequence
Length = 556
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +3
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 54 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 200
>gb|AL750057.1|AL750057 AL750057 AS Pinus pinaster cDNA clone AS05C09 similar to RP L29,
mRNA sequence
Length = 192
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +2
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 35 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 181
>gb|AL750066.1|AL750066 AL750066 AS Pinus pinaster cDNA clone AS05D06 similar to RP L29,
mRNA sequence
Length = 525
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +2
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 35 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 181
>gb|AL750433.1|AL750433 AL750433 RN Pinus pinaster cDNA clone RN02E01 similar to RP L29,
mRNA sequence
Length = 506
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 43 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 189
>gb|BX250562.1|BX250562 BX250562 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038E10 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 418
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 43 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 189
>gb|BX253067.1|BX253067 BX253067 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP077D12 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 534
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 43 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 189
>gb|BX253197.1|BX253197 BX253197 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP079F06, mRNA sequence
Length = 543
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +2
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 41 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 187
>gb|BX254128.1|BX254128 BX254128 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093G10, mRNA sequence
Length = 523
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +2
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 35 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 181
>gb|BX254430.1|BX254430 BX254430 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP098E06 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 534
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +2
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 41 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 187
>gb|BX255376.1|BX255376 BX255376 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005B03 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 571
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 43 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 189
>gb|BE496472.1|BE496472 NXCI_018_E06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_018_E06 5' similar to Arabidopsis
thaliana sequence At3g06700 ribosomal protein L29,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 519
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +3
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 18 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 164
>gb|BF220655.1|BF220655 NXCI_151_B08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_151_B08 5' similar to Arabidopsis
thaliana sequence At3g06700 ribosomal protein L29,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 308
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +3
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 18 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 164
>gb|BF777488.1|BF777488 NXSI_069_B08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_069_B08 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 438
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +3
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 36 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 182
>gb|BG040067.1|BG040067 NXSI_106_A02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_106_A02 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +3
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 36 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 182
>gb|BG275893.1|BG275893 NXSI_149_B12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_149_B12 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 511
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +3
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 48 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 194
>gb|BM427978.1|BM427978 NXRV_007_B01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_007_B01 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 376
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 46 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 192
>gb|BM427981.1|BM427981 NXRV_007_B07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_007_B07 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 333
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 46 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 192
>gb|BM493839.1|BM493839 NXLV_070_C06_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_070_C06 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 600
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +3
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 72 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 218
>gb|BQ701602.1|BQ701602 NXSI_111_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_111_E05 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +3
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 36 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 182
>gb|BX682309.2|BX682309 BX682309 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 114H10 similar to 60S ribosomal protein L29,
mRNA sequence
Length = 563
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +3
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 45 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 191
>gb|DN627179.1|DN627179 EST977995 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAF47, mRNA sequence
Length = 394
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / +2
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 65 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 211
>gb|DN633772.1|DN633772 EST984588 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADB75, mRNA sequence
Length = 399
Score = 106 bits (227), Expect = 8e-023
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +3 / -1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 330 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 184
>gb|AA739750.1|AA739750 515 PtIFG2 Pinus taeda cDNA clone 8831M 3', mRNA sequence
Length = 451
Score = 106 bits (226), Expect = 1e-022
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +3 / +1
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 34 QMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 177
>gb|BX253596.1|BX253596 BX253596 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP085G02 similar to 60S RIBOSOMAL PROTEIN
L29, mRNA sequence
Length = 526
Score = 106 bits (226), Expect = 1e-022
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +3 / +2
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 44 QMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 187
>gb|BM492562.1|BM492562 NXRV_028_B03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_028_B03 5' similar to Arabidopsis thaliana
sequence At3g06700 ribosomal protein L29, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 431
Score = 105 bits (224), Expect = 2e-022
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +3 / +1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHN+SYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 46 QKMAKSKNHTAHNESYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 192
>gb|DR686678.1|DR686678 EST1076756 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI65 3' end, mRNA sequence
Length = 571
Score = 104 bits (222), Expect = 4e-022
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +3 / +1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQS+K HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 61 QKMAKSKNHTAHNQSHKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 207
>gb|DN627075.1|DN627075 EST977891 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAD96, mRNA sequence
Length = 403
Score = 104 bits (221), Expect = 6e-022
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +3 / +2
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK++R TS KGMDPKFLRN RY+R
Sbjct: 74 QKMAKSKNHTAHNQSYKNHKNGIKKPKKYRHTSRKGMDPKFLRNQRYAR 220
>gb|DN632513.1|DN632513 EST983329 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACQ17, mRNA sequence
Length = 394
Score = 104 bits (221), Expect = 6e-022
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +3 / +2
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTA+NQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 65 QKMAKSKNHTAYNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 211
>gb|DN633693.1|DN633693 EST984509 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADA52, mRNA sequence
Length = 394
Score = 104 bits (221), Expect = 6e-022
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +3 / +2
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK++R TS KGMDPKFLRN RY+R
Sbjct: 65 QKMAKSKNHTAHNQSYKNHKNGIKKPKKYRHTSRKGMDPKFLRNQRYAR 211
>gb|DN633894.1|DN633894 EST984710 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADD68, mRNA sequence
Length = 393
Score = 104 bits (221), Expect = 6e-022
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +3 / -1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTA+NQSYK HKNGIKKPK+HR TS KGMDPKFLRN RY+R
Sbjct: 330 QKMAKSKNHTAYNQSYKNHKNGIKKPKKHRHTSRKGMDPKFLRNQRYAR 184
>gb|DR744296.1|DR744296 RTCU1_21_B11.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_B11_A029 5', mRNA sequence
Length = 742
Score = 103 bits (219), Expect = 1e-021
Identities = 40/49 (81%), Positives = 44/49 (89%)
Frame = +3 / +1
Query: 108 EEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
++MAKSKNHTAHNQSYK HKNGIKKPK+HR TS KGMD KFLRN RY+R
Sbjct: 67 QKMAKSKNHTAHNQSYKNHKNGIKKPKKHRHTSRKGMDAKFLRNQRYAR 213
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 255,119,600
Number of Sequences: 355925
Number of extensions: 3303673
Number of successful extensions: 51443
Number of sequences better than 1.0e-020: 48
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6458554830
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)