TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.392
(725 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW290111.1|AW290111 NXNV010D03F Nsf Xylem Normal wood Ve... 158 5e-038
gb|CD026738.1|CD026738 NXNV010D03 Nsf Xylem Normal wood Ver... 158 5e-038
gb|CF475292.1|CF475292 RTWW2_13_H04.b1_A021 Well-watered lo... 158 5e-038
gb|CV036192.1|CV036192 RTNACL1_57_H03.b1_A029 Roots plus ad... 158 5e-038
gb|CX647947.1|CX647947 COLD1_25_C01.g1_A029 Root cold Pinus... 158 5e-038
gb|DR012575.1|DR012575 HEAT1_13_E12.g1_A029 Root at 37 C fo... 158 5e-038
gb|DR012617.1|DR012617 HEAT1_14_A11.b1_A029 Root at 37 C fo... 158 5e-038
gb|DR012699.1|DR012699 HEAT1_14_A11.g1_A029 Root at 37 C fo... 158 5e-038
gb|DR019100.1|DR019100 STRS1_27_G03.g1_A034 Shoot tip pitch... 158 5e-038
gb|DR091549.1|DR091549 RTAL1_22_H09.b1_A029 Roots plus adde... 158 5e-038
gb|DR744660.1|DR744660 RTCU1_24_B03.b1_A029 Roots plus adde... 158 5e-038
gb|DR744725.1|DR744725 RTCU1_24_B03.g1_A029 Roots plus adde... 158 5e-038
gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, compl... 158 5e-038
gb|AJ541803.1|AJ541803 AJ541803 Pinus pinaster differentiat... 156 2e-037
gb|CF393816.1|CF393816 RTDS2_1_A10.g1_A021 Drought-stressed... 155 4e-037
gb|CF668421.1|CF668421 RTCNT1_36_H10.b1_A029 Root control P... 155 4e-037
gb|CF668506.1|CF668506 RTCNT1_36_H10.g1_A029 Root control P... 155 4e-037
gb|CF670258.1|CF670258 RTCNT1_49_C06.b1_A029 Root control P... 155 4e-037
gb|CF670333.1|CF670333 RTCNT1_49_C06.g1_A029 Root control P... 155 4e-037
gb|CR393186.1|CR393186 CR393186 RN Pinus pinaster cDNA clon... 155 4e-037
gb|CO200857.1|CO200857 RTCNT2_2_B11.b1_A029 Root control 2 ... 155 4e-037
gb|CO364984.1|CO364984 RTK1_23_A06.b1_A029 Roots minus pota... 155 4e-037
gb|CV034792.1|CV034792 RTNACL1_11_D05.g1_A029 Roots plus ad... 155 4e-037
gb|DR022118.1|DR022118 STRS1_49_A10.b1_A034 Shoot tip pitch... 155 4e-037
gb|DR110346.1|DR110346 RTS1_10_H03.b1_A029 Roots minus sulf... 155 4e-037
gb|DR167453.1|DR167453 RTPHOS1_18_H05.g1_A029 Roots minus p... 155 4e-037
gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus pota... 154 8e-037
gb|AA556373.1|AA556373 228 Loblolly pine C Pinus taeda cDNA... 152 3e-036
gb|CF396421.1|CF396421 RTDS2_21_H12.g1_A021 Drought-stresse... 149 2e-035
gb|BE662302.1|BE662302 ST84/ST84D02 Pine TriplEx shoot tip ... 147 1e-034
gb|CV033612.1|CV033612 RTNACL1_35_C08.g1_A029 Roots plus ad... 143 1e-033
gb|CF396280.1|CF396280 RTDS2_21_H12.b1_A021 Drought-stresse... 139 2e-032
gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calc... 138 3e-032
gb|DR011478.1|DR011478 HEAT1_6_A10.b1_A029 Root at 37 C for... 136 1e-031
gb|CO158387.1|CO158387 FLD1_6_C10.g1_A029 Root flooded Pinu... 136 2e-031
gb|CO361728.1|CO361728 NDL2_6_E01.g1_A029 Needles control 2... 136 2e-031
gb|CO361739.1|CO361739 NDL2_6_F01.g1_A029 Needles control 2... 136 2e-031
gb|CV031923.1|CV031923 RTNACL1_4_D03.g1_A029 Roots plus add... 136 2e-031
gb|DR098106.1|DR098106 STRR1_39_D06.b1_A033 Stem Response R... 136 2e-031
gb|CO198952.1|CO198952 GEO1_17_E10.g1_A029 Root gravitropis... 118 5e-026
gb|DR098180.1|DR098180 STRR1_39_D06.g1_A033 Stem Response R... 115 3e-025
gb|CO198875.1|CO198875 GEO1_17_E10.b1_A029 Root gravitropis... 115 4e-025
gb|CF395619.1|CF395619 RTDS2_12_C07.g1_A021 Drought-stresse... 73 1e-022
gb|DR021364.1|DR021364 STRS1_44_D10.b1_A034 Shoot tip pitch... 106 1e-022
gb|CF671078.1|CF671078 RTCNT1_54_C08.g1_A029 Root control P... 106 2e-022
gb|DR024916.1|DR024916 STRS1_68_H05.b1_A034 Shoot tip pitch... 104 7e-022
>gb|AW290111.1|AW290111 NXNV010D03F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010D03 5', mRNA sequence
Length = 346
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 94 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 273
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 274 YAKKLAEETWAKH 312
>gb|CD026738.1|CD026738 NXNV010D03 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010D03 5' similar to Arabidopsis thaliana sequence
At1g56340 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 346
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 94 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 273
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 274 YAKKLAEETWAKH 312
>gb|CF475292.1|CF475292 RTWW2_13_H04.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_13_H04_A021 3', mRNA sequence
Length = 551
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 301 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 480
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 481 YAKKLAEETWAKH 519
>gb|CV036192.1|CV036192 RTNACL1_57_H03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_H03_A029 3', mRNA sequence
Length = 758
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 508 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 687
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 688 YAKKLAEETWAKH 726
>gb|CX647947.1|CX647947 COLD1_25_C01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_C01_A029 5', mRNA sequence
Length = 845
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / -2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 712 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 533
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 532 YAKKLAEETWAKH 494
>gb|DR012575.1|DR012575 HEAT1_13_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_E12_A029 5', mRNA sequence
Length = 755
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / -1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 272 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 93
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 92 YAKKLAEETWAKH 54
>gb|DR012617.1|DR012617 HEAT1_14_A11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_A11_A029 3', mRNA sequence
Length = 791
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 86 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 265
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 266 YAKKLAEETWAKH 304
>gb|DR012699.1|DR012699 HEAT1_14_A11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_A11_A029 5', mRNA sequence
Length = 817
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +3
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 87 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 266
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 267 YAKKLAEETWAKH 305
>gb|DR019100.1|DR019100 STRS1_27_G03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_G03_A034 5', mRNA sequence
Length = 867
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 242 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 421
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 422 YAKKLAEETWAKH 460
>gb|DR091549.1|DR091549 RTAL1_22_H09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_H09_A029 3', mRNA sequence
Length = 751
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 22 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 201
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 202 YAKKLAEETWAKH 240
>gb|DR744660.1|DR744660 RTCU1_24_B03.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B03_A029 3', mRNA sequence
Length = 816
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +3
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 87 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 266
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 267 YAKKLAEETWAKH 305
>gb|DR744725.1|DR744725 RTCU1_24_B03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B03_A029 5', mRNA sequence
Length = 747
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 494 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 673
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 674 YAKKLAEETWAKH 712
>gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, complete cds
Length = 1593
Score = 158 bits (339), Expect = 5e-038
Identities = 59/73 (80%), Positives = 65/73 (89%)
Frame = +3 / +3
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 864 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 1043
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 1044 YAKKLAEETWAKH 1082
>gb|AJ541803.1|AJ541803 AJ541803 Pinus pinaster differentiating xylem adult Pinus pinaster
cDNA clone PP001B06, mRNA sequence
Length = 702
Score = 156 bits (335), Expect = 2e-037
Identities = 58/73 (79%), Positives = 65/73 (89%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAP+IDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 95 KKIKNPNYKGKWKAPIIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 274
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 275 YAKKLAEETWAKH 313
>gb|CF393816.1|CF393816 RTDS2_1_A10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_A10_A021 5', mRNA sequence
Length = 755
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 392 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 571
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 572 YAKKLAEETWGKH 610
>gb|CF668421.1|CF668421 RTCNT1_36_H10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_H10_A029 3', mRNA sequence
Length = 689
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +3
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 84 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 263
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 264 YAKKLAEETWGKH 302
>gb|CF668506.1|CF668506 RTCNT1_36_H10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_H10_A029 5', mRNA sequence
Length = 565
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 293 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 472
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 473 YAKKLAEETWGKH 511
>gb|CF670258.1|CF670258 RTCNT1_49_C06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_C06_A029 3', mRNA sequence
Length = 701
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 82 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 261
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 262 YAKKLAEETWGKH 300
>gb|CF670333.1|CF670333 RTCNT1_49_C06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_C06_A029 5', mRNA sequence
Length = 709
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 239 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 418
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 419 YAKKLAEETWGKH 457
>gb|CR393186.1|CR393186 CR393186 RN Pinus pinaster cDNA clone RN53F09, mRNA sequence
Length = 588
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +3
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 156 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 335
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 336 YAKKLAEETWGKH 374
>gb|CO200857.1|CO200857 RTCNT2_2_B11.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_B11_A029 3', mRNA sequence
Length = 625
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 29 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 208
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 209 YAKKLAEETWGKH 247
>gb|CO364984.1|CO364984 RTK1_23_A06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_A06_A029 3', mRNA sequence
Length = 825
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +3
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 213 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 392
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 393 YAKKLAEETWGKH 431
>gb|CV034792.1|CV034792 RTNACL1_11_D05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_11_D05_A029 5', mRNA sequence
Length = 646
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / -3
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 590 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 411
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 410 YAKKLAEETWGKH 372
>gb|DR022118.1|DR022118 STRS1_49_A10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_49_A10_A034 3', mRNA sequence
Length = 848
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 230 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 409
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 410 YAKKLAEETWGKH 448
>gb|DR110346.1|DR110346 RTS1_10_H03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_10_H03_A029 3', mRNA sequence
Length = 825
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +3
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 201 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 380
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 381 YAKKLAEETWGKH 419
>gb|DR167453.1|DR167453 RTPHOS1_18_H05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_H05_A029 5', mRNA sequence
Length = 509
Score = 155 bits (332), Expect = 4e-037
Identities = 58/73 (79%), Positives = 63/73 (86%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 206 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 385
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 386 YAKKLAEETWGKH 424
>gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_E11_A029 5', mRNA sequence
Length = 797
Score = 154 bits (330), Expect = 8e-037
Identities = 58/73 (79%), Positives = 64/73 (87%)
Frame = +3 / -2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTL DNI+I+DDP
Sbjct: 241 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLNDNILISDDPE 62
Query: 189 LAKTFAEETWGKH 227
AK AEETW KH
Sbjct: 61 YAKKLAEETWAKH 23
>gb|AA556373.1|AA556373 228 Loblolly pine C Pinus taeda cDNA clone 1C10G, mRNA sequence
Length = 638
Score = 152 bits (326), Expect = 3e-036
Identities = 57/73 (78%), Positives = 62/73 (84%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP
Sbjct: 52 KKIKNPKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPE 231
Query: 189 LAKTFAEETWGKH 227
AK A ETWGKH
Sbjct: 232 YAKKLAXETWGKH 270
>gb|CF396421.1|CF396421 RTDS2_21_H12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_21_H12_A021 5', mRNA sequence
Length = 752
Score = 149 bits (320), Expect = 2e-035
Identities = 56/73 (76%), Positives = 62/73 (84%)
Frame = +3 / +3
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNP Y+GKW APMIDNPDFK+DP +Y F SLKY+GIELWQVK GTLFDNI++ DDP
Sbjct: 348 KKIKNPKYKGKWVAPMIDNPDFKEDPELYVFPSLKYLGIELWQVK*GTLFDNILVCDDPE 527
Query: 189 LAKTFAEETWGKH 227
AK AEETWGKH
Sbjct: 528 YAKKLAEETWGKH 566
>gb|BE662302.1|BE662302 ST84/ST84D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST84/ST84D02, mRNA sequence
Length = 421
Score = 147 bits (315), Expect = 1e-034
Identities = 56/73 (76%), Positives = 62/73 (84%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIEL VKSGTLFDNI+I+DDP
Sbjct: 124 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELXXVKSGTLFDNILISDDPE 303
Query: 189 LAKTFAEETWGKH 227
AK EETW KH
Sbjct: 304 YAKKXXEETWAKH 342
>gb|CV033612.1|CV033612 RTNACL1_35_C08.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_C08_A029 5', mRNA sequence
Length = 573
Score = 143 bits (307), Expect = 1e-033
Identities = 53/68 (77%), Positives = 58/68 (85%)
Frame = +3 / -2
Query: 24 PNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTF 203
P Y+GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP AK
Sbjct: 572 PKYKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPEYAKKL 393
Query: 204 AEETWGKH 227
AEETWGKH
Sbjct: 392 AEETWGKH 369
>gb|CF396280.1|CF396280 RTDS2_21_H12.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_21_H12_A021 3', mRNA sequence
Length = 587
Score = 139 bits (298), Expect = 2e-032
Identities = 52/68 (76%), Positives = 57/68 (83%)
Frame = +3 / +1
Query: 24 PNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTF 203
P +GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP AK
Sbjct: 1 PKSKGKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPEYAKKL 180
Query: 204 AEETWGKH 227
AEETWGKH
Sbjct: 181 AEETWGKH 204
>gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_C03_A029 5', mRNA sequence
Length = 860
Score = 138 bits (297), Expect = 3e-032
Identities = 52/63 (82%), Positives = 58/63 (92%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWKAPMIDNPDFKDDP +Y F +LKY+GIELWQVKSGTLFDNI+I+DDP
Sbjct: 664 KKIKNPNYKGKWKAPMIDNPDFKDDPELYVFPNLKYLGIELWQVKSGTLFDNILISDDPE 843
Query: 189 LAK 197
AK
Sbjct: 844 YAK 852
>gb|DR011478.1|DR011478 HEAT1_6_A10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_6_A10_A029 3', mRNA sequence
Length = 600
Score = 136 bits (292), Expect = 1e-031
Identities = 51/64 (79%), Positives = 55/64 (85%)
Frame = +3 / +1
Query: 36 GKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEET 215
GKW APMIDNPDFKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP AK AEET
Sbjct: 1 GKWVAPMIDNPDFKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPEYAKKLAEET 180
Query: 216 WGKH 227
WGKH
Sbjct: 181 WGKH 192
>gb|CO158387.1|CO158387 FLD1_6_C10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_6_C10_A029 5', mRNA sequence
Length = 802
Score = 136 bits (291), Expect = 2e-031
Identities = 46/73 (63%), Positives = 62/73 (84%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWK P +DNP+F+DDP +Y F LKY+GIE+WQVK+G+++DNI++ DDP
Sbjct: 118 KKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQ 297
Query: 189 LAKTFAEETWGKH 227
A+ AEETWG++
Sbjct: 298 YAREVAEETWGRN 336
>gb|CO361728.1|CO361728 NDL2_6_E01.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_E01_A029 5', mRNA sequence
Length = 761
Score = 136 bits (291), Expect = 2e-031
Identities = 46/73 (63%), Positives = 62/73 (84%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWK P +DNP+F+DDP +Y F LKY+GIE+WQVK+G+++DNI++ DDP
Sbjct: 458 KKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQ 637
Query: 189 LAKTFAEETWGKH 227
A+ AEETWG++
Sbjct: 638 YAREVAEETWGRN 676
>gb|CO361739.1|CO361739 NDL2_6_F01.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_F01_A029 5', mRNA sequence
Length = 823
Score = 136 bits (291), Expect = 2e-031
Identities = 46/73 (63%), Positives = 62/73 (84%)
Frame = +3 / +2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWK P +DNP+F+DDP +Y F LKY+GIE+WQVK+G+++DNI++ DDP
Sbjct: 458 KKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQ 637
Query: 189 LAKTFAEETWGKH 227
A+ AEETWG++
Sbjct: 638 YAREVAEETWGRN 676
>gb|CV031923.1|CV031923 RTNACL1_4_D03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_4_D03_A029 5', mRNA sequence
Length = 745
Score = 136 bits (291), Expect = 2e-031
Identities = 46/73 (63%), Positives = 62/73 (84%)
Frame = +3 / -3
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWK P +DNP+F+DDP +Y F LKY+GIE+WQVK+G+++DNI++ DDP
Sbjct: 617 KKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQ 438
Query: 189 LAKTFAEETWGKH 227
A+ AEETWG++
Sbjct: 437 YAREVAEETWGRN 399
>gb|DR098106.1|DR098106 STRR1_39_D06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_D06_A033 3', mRNA sequence
Length = 667
Score = 136 bits (291), Expect = 2e-031
Identities = 46/73 (63%), Positives = 62/73 (84%)
Frame = +3 / -2
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWK P +DNP+F+DDP +Y F LKY+GIE+WQVK+G+++DNI++ DDP
Sbjct: 249 KKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQ 70
Query: 189 LAKTFAEETWGKH 227
A+ AEETWG++
Sbjct: 69 YAREVAEETWGRN 31
>gb|CO198952.1|CO198952 GEO1_17_E10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_17_E10_A029 5', mRNA sequence
Length = 800
Score = 118 bits (252), Expect = 5e-026
Identities = 40/62 (64%), Positives = 53/62 (85%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPA 188
KKIKNPNY+GKWK P +DNP+F+DDP +Y F LKY+GIE+WQVK+G+++DNI++ DDP
Sbjct: 613 KKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQ 792
Query: 189 LA 194
A
Sbjct: 793 YA 798
>gb|DR098180.1|DR098180 STRR1_39_D06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_D06_A033 5', mRNA sequence
Length = 632
Score = 115 bits (246), Expect = 3e-025
Identities = 38/65 (58%), Positives = 54/65 (83%)
Frame = +3 / -2
Query: 33 QGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEE 212
+GKWK P +DNP+F+DDP +Y F LKY+GIE+WQVK+G+++DNI++ DDP A+ AEE
Sbjct: 631 KGKWKTPWVDNPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQYAREVAEE 452
Query: 213 TWGKH 227
TWG++
Sbjct: 451 TWGRN 437
>gb|CO198875.1|CO198875 GEO1_17_E10.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_17_E10_A029 3', mRNA sequence
Length = 661
Score = 115 bits (245), Expect = 4e-025
Identities = 38/64 (59%), Positives = 53/64 (82%)
Frame = +3 / +2
Query: 36 GKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEET 215
GKWK P +DNP+F+DDP +Y F LKY+GIE+WQVK+G+++DNI++ DDP A+ AEET
Sbjct: 2 GKWKTPWVDNPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQYAREVAEET 181
Query: 216 WGKH 227
WG++
Sbjct: 182 WGRN 193
>gb|CF395619.1|CF395619 RTDS2_12_C07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_12_C07_A021 5', mRNA sequence
Length = 755
Score = 72.5 bits (152), Expect(2) = 1e-022
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +3 / +1
Query: 9 KKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIG 122
KKIKNPNY+GKWK P +DNP+F+DDP +Y F LK G
Sbjct: 565 KKIKNPNYKGKWKTPWVDNPEFEDDPDLYVFKPLKICG 678
Score = 53.8 bits (111), Expect(2) = 1e-022
Identities = 17/29 (58%), Positives = 26/29 (89%)
Frame = +3 / +2
Query: 111 KYIGIELWQVKSGTLFDNIIITDDPALAK 197
KY+GIE+WQVK+G+++DNI++ DDP A+
Sbjct: 668 KYVGIEVWQVKAGSVYDNILVCDDPQYAR 754
>gb|DR021364.1|DR021364 STRS1_44_D10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_44_D10_A034 3', mRNA sequence
Length = 580
Score = 106 bits (227), Expect = 1e-022
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +3 / +2
Query: 72 FKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEETWGKH 227
FKDDP +Y F SLKY+GIELWQVKSGTLFDNI++ DDP AK AEETWGKH
Sbjct: 2 FKDDPELYVFPSLKYLGIELWQVKSGTLFDNILVCDDPEYAKKLAEETWGKH 157
>gb|CF671078.1|CF671078 RTCNT1_54_C08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_54_C08_A029 5', mRNA sequence
Length = 676
Score = 106 bits (226), Expect = 2e-022
Identities = 35/62 (56%), Positives = 50/62 (80%)
Frame = +3 / +3
Query: 42 WKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEETWG 221
WK P +D P+F+DDP +Y F LKY+GIE+WQVK+G+++DNI++ DDP A+ AEETWG
Sbjct: 3 WKTPWVDYPEFEDDPDLYVFKPLKYVGIEVWQVKAGSVYDNILVCDDPQYAREVAEETWG 182
Query: 222 KH 227
++
Sbjct: 183 RN 188
>gb|DR024916.1|DR024916 STRS1_68_H05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_68_H05_A034 3', mRNA sequence
Length = 652
Score = 104 bits (222), Expect = 7e-022
Identities = 35/61 (57%), Positives = 49/61 (80%)
Frame = +3 / +2
Query: 45 KAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEETWGK 224
K P +DNP+F+DDP +Y F LKY+GIE WQVK+G+++DNI++ DDP A+ AEETWG+
Sbjct: 2 KTPWVDNPEFEDDPDLYVFKPLKYVGIEFWQVKAGSVYDNILVCDDPQYAREVAEETWGR 181
Query: 225 H 227
+
Sbjct: 182 N 184
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 295,001,096
Number of Sequences: 355925
Number of extensions: 3393406
Number of successful extensions: 43665
Number of sequences better than 1.0e-020: 53
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10190434905
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)