TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.148
(977 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response R... 166 4e-062
gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch... 98 4e-045
gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch... 78 2e-041
gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus... 166 2e-040
gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus pota... 95 3e-040
gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo li... 83 1e-039
gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus pota... 95 4e-039
gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine r... 109 1e-036
gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA... 95 1e-035
gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine r... 145 6e-035
gb|CF390174.1|CF390174 RTDR2_12_E07.g1_A021 Loblolly pine r... 93 2e-034
gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus add... 106 4e-034
gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch... 85 2e-032
gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calc... 85 2e-032
gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response R... 85 2e-032
gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iro... 85 2e-032
gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calc... 85 3e-032
gb|DR081852.1|DR081852 RTFEPL1_32_F12.g1_A029 Roots plus ad... 95 1e-031
gb|CF392740.1|CF392740 RTDR3_5_G10.g1_A022 Loblolly pine ro... 105 2e-030
gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus add... 109 4e-030
gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus add... 109 8e-030
gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response R... 77 3e-029
gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch... 77 5e-029
gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch... 77 5e-029
gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side ... 75 6e-029
gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated wi... 95 5e-028
gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism... 100 1e-027
gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control P... 85 2e-027
gb|DT636173.1|DT636173 EST1151104 Normalized pine embryo li... 83 2e-027
gb|DR387566.1|DR387566 RTHG1_22_E08.g2_A029 Roots plus adde... 83 2e-027
gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response R... 85 4e-027
gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pin... 72 9e-027
gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus pota... 87 2e-026
gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus pota... 87 2e-026
gb|DR743165.1|DR743165 RTCU1_14_B08.b1_A029 Roots plus adde... 85 1e-025
gb|DR081789.1|DR081789 RTFEPL1_32_F12.b1_A029 Roots plus ad... 115 6e-025
gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C fo... 93 9e-025
gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clon... 76 1e-024
gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pin... 71 2e-024
gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinu... 95 2e-024
gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciat... 79 3e-024
gb|DR744730.1|DR744730 RTCU1_24_B09.g1_A029 Roots plus adde... 66 4e-024
gb|CO162287.1|CO162287 FLD1_34_H05.b1_A029 Root flooded Pin... 79 2e-023
gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2... 110 2e-023
gb|CF390846.1|CF390846 RTDR3_2_H05.b1_A022 Loblolly pine ro... 109 4e-023
gb|CF392633.1|CF392633 RTDR3_5_G10.b1_A022 Loblolly pine ro... 109 4e-023
gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine ro... 106 2e-022
gb|CF392313.1|CF392313 RTDR3_7_B01.b1_A022 Loblolly pine ro... 106 3e-022
gb|DR048637.1|DR048637 RTBOR1_10_E10.b1_A029 Roots plus add... 106 3e-022
gb|DR685831.1|DR685831 EST1075908 Normalized pine embryo li... 52 5e-022
gb|CX652380.1|CX652380 COLD1_58_E05.g1_A029 Root cold Pinus... 85 1e-021
gb|BX250956.1|BX250956 BX250956 Pinus pinaster differenciat... 95 1e-021
gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus... 71 2e-021
gb|CX649586.1|CX649586 COLD1_36_E07.b1_A029 Root cold Pinus... 79 8e-021
>gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_18_E04_A033 5', mRNA sequence
Length = 813
Score = 166 bits (358), Expect(2) = 4e-062
Identities = 61/121 (50%), Positives = 84/121 (69%)
Frame = -1 / +1
Query: 599 WIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPLSMQDALEDYKRLDYLQRH 420
W+Y+Y GL+DLL+ +K +Y NPPI+ITENG+ D +++ S+ +AL D R++Y H
Sbjct: 346 WLYVYAPGLRDLLIYIKQRYNNPPIFITENGVNDFPVENSDPSLDEALNDTWRINYCSEH 525
Query: 419 ISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAKWLRE 240
+ I ++I GADVRG F WSL+DNFEW GYT R+G IY+D DG +RY K SA W +
Sbjct: 526 LHYILQAIREGADVRGFFAWSLMDNFEWGFGYTSRFGFIYIDYKDGLKRYPKASAHWYKR 705
Query: 239 F 237
F
Sbjct: 706 F 708
Score = 92.3 bits (195), Expect(2) = 4e-062
Identities = 35/72 (48%), Positives = 50/72 (69%)
Frame = -1 / +1
Query: 932 PYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYD 753
PY ++ D+ A +R++D LGWF++PV GDYPF+MR RL FT+ E L GS+D
Sbjct: 22 PYSSSQDDQNAAQRAVDFMLGWFIDPVTSGDYPFTMRDRLGDRLLKFTEQESEQLKGSFD 201
Query: 752 ILGINYYTSRFS 717
LG+NYYTS+++
Sbjct: 202 FLGMNYYTSQYA 237
>gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_C01_A034 3', mRNA sequence
Length = 903
Score = 97.7 bits (207), Expect(3) = 4e-045
Identities = 38/84 (45%), Positives = 54/84 (64%)
Frame = -1 / +1
Query: 494 DTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTER 315
D + ++ AL D KR+ Y H+S + ++I GADVRG+ WSLLD+ EWSSGY R
Sbjct: 436 DFDNGTTPLERALNDSKRVKYHYEHLSSLLQAIREGADVRGYVAWSLLDSLEWSSGYNYR 615
Query: 314 YGIIYVDRDDGYRRYLKRSAKWLR 243
+G+ YVD D +RY + SA+W +
Sbjct: 616 FGLHYVDYHDNLKRYARASAQWFK 687
Score = 62.9 bits (131), Expect(3) = 4e-045
Identities = 26/50 (52%), Positives = 32/50 (64%)
Frame = -1 / +1
Query: 866 FLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFS 717
FL+P+ G YP SMR L RLP FT E L GS+D LG NYY++ F+
Sbjct: 73 FLDPLTSGKYPDSMRXLVGTRLPQFTIEEAEELKGSFDFLGFNYYSTDFT 222
Score = 60.2 bits (125), Expect(3) = 4e-045
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = -1 / +1
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPL 474
+G IG G YP GL+D++ K++Y NPPIYITE+G GD D PL
Sbjct: 301 NGVYIGSAEGLSEFRSYPAGLRDVISYTKHRYDNPPIYITESGYGDFDNGTTPL 462
>gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_B04_A034 3', mRNA sequence
Length = 868
Score = 77.6 bits (163), Expect(3) = 2e-041
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = -1 / +2
Query: 902 AQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSR 723
A +R+ D LGWF++P+V GDYP SMR RLP F+ E + GS D +GIN+YT+
Sbjct: 5 ATQRAQDFQLGWFMDPLVFGDYPASMRERVGNRLPLFSSEESNRVKGSLDFVGINHYTTY 184
Query: 722 FSKH 711
++++
Sbjct: 185 YARN 196
Score = 71.6 bits (150), Expect(3) = 2e-041
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = -1 / +2
Query: 389 GADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAKWLREF 237
G +V G+F WSLLDN+EW++GYT R+G+ +VD RY K S +W + F
Sbjct: 515 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCF 667
Score = 59.3 bits (123), Expect(3) = 2e-041
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = -1 / +2
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGD 498
+G +IG + W+Y+ P G++ L+ +K +Y NPP+ ITENG+ D
Sbjct: 272 NGRAIGDKASSAWLYIVPHGIRSLMNYIKRRYNNPPVIITENGMDD 409
>gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_F11_A029 3', mRNA sequence
Length = 805
Score = 166 bits (358), Expect = 2e-040
Identities = 61/121 (50%), Positives = 84/121 (69%)
Frame = -1 / +3
Query: 599 WIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPLSMQDALEDYKRLDYLQRH 420
W+Y+Y GL+DLL+ +K +Y NPPI+ITENG+ D +++ S+ +AL D R++Y H
Sbjct: 81 WLYVYAPGLRDLLIYIKQRYNNPPIFITENGVNDFPVENSDPSLDEALNDTWRINYCSEH 260
Query: 419 ISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAKWLRE 240
+ I ++I GADVRG F WSL+DNFEW GYT R+G IY+D DG +RY K SA W +
Sbjct: 261 LHYILQAIREGADVRGFFAWSLMDNFEWGFGYTSRFGFIYIDYKDGLKRYPKASAHWYKR 440
Query: 239 F 237
F
Sbjct: 441 F 443
>gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 3', mRNA sequence
Length = 811
Score = 95.0 bits (201), Expect(2) = 3e-040
Identities = 36/87 (41%), Positives = 57/87 (65%)
Frame = -1 / +2
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G D + S+ A+ D R+ Y +H+S ++E+I G+DVRG+ WSL+D+FEWS G+
Sbjct: 464 GYADFDNGTTSLARAVNDPGRVKYHYQHLSHLREAIRAGSDVRGYLVWSLMDDFEWSFGF 643
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLR 243
T R+G+ YVD ++ +RY + SA W +
Sbjct: 644 TYRFGLYYVDLNNHLKRYARASALWFK 724
Score = 94.1 bits (199), Expect(2) = 3e-040
Identities = 37/84 (44%), Positives = 53/84 (63%)
Frame = -1 / +2
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G IG A VP+ + D++A +R++D LGWFL+P+ G YP SMR L +RLP F
Sbjct: 2 GSIGFALVANWMVPFSKSLSDKRATQRAIDFRLGWFLDPLTSGKYPESMRRLVGRRLPRF 181
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
++ E L GS+D +G NYY ++F
Sbjct: 182 SNEEAKDLKGSFDFIGFNYYITQF 253
>gb|DR690593.1|DR690593 EST1080679 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACW86 3' end, mRNA sequence
Length = 754
Score = 82.6 bits (174), Expect(3) = 1e-039
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = -1 / +3
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G IG+ D P+ + D++A +R + GWFL+P+ GDYP MR RLP F
Sbjct: 135 GVIGITVDGEWAEPFTDAEGDKEAAQRRREFQFGWFLDPIYFGDYPAIMRKKLGDRLPQF 314
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
+ +E A+L GS D LG+N+YT+R+
Sbjct: 315 SPDEVAVLRGSSDFLGLNHYTTRY 386
Score = 60.2 bits (125), Expect(3) = 1e-039
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = -1 / +3
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTK 486
+GN+IG + W+Y+ P G + +L + +Y PPIY+TENG+ D D++
Sbjct: 462 EGNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSE 611
Score = 59.3 bits (123), Expect(3) = 1e-039
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = -1 / +3
Query: 470 MQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFE 339
+ AL D KR++Y + ++ + E+I GADVRG+F WSL+DNFE
Sbjct: 621 LDQALNDTKRVNYFKGYLKALAEAIWEGADVRGYFAWSLIDNFE 752
>gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 5', mRNA sequence
Length = 805
Score = 95.0 bits (201), Expect(2) = 4e-039
Identities = 36/87 (41%), Positives = 57/87 (65%)
Frame = -1 / +1
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G D + S+ A+ D R+ Y +H+S ++E+I G+DVRG+ WSL+D+FEWS G+
Sbjct: 454 GYADFDNGTTSLARAVNDPGRVKYHYQHLSHLREAIRAGSDVRGYLVWSLMDDFEWSFGF 633
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLR 243
T R+G+ YVD ++ +RY + SA W +
Sbjct: 634 TYRFGLYYVDLNNHLKRYARASALWFK 714
Score = 90.0 bits (190), Expect(2) = 4e-039
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = -1 / +1
Query: 962 GLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFFTDN 783
G A VP+ + D++A +R++D LGWFL+P+ G YP SMR L +RLP F++
Sbjct: 1 GFALVANWMVPFSKSLSDKRATQRAIDFRLGWFLDPLTSGKYPESMRRLVGRRLPRFSNE 180
Query: 782 EQAMLAGSYDILGINYYTSRF 720
E L GS+D +G NYY ++F
Sbjct: 181 EAKDLKGSFDFIGFNYYITQF 243
>gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_D05_A021 5', mRNA
sequence
Length = 796
Score = 109 bits (232), Expect(3) = 1e-036
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = -1 / +2
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G D + +++AL D +R++Y +H+S + E+I GADVRG+ WSLLDNFEW+SGY
Sbjct: 281 GYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGY 460
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLR 243
R+G+ Y+D +D +RY + SA W R
Sbjct: 461 DYRFGLYYIDYNDNLKRYARESAHWFR 541
Score = 52.4 bits (108), Expect(3) = 1e-036
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = -1 / +2
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVD 492
+G +G G YP GL+D++ K++Y NPPIYITE G D D
Sbjct: 155 NGVYLGSDEGVSAFRSYPAGLRDVINYTKHRYNNPPIYITETGYADFD 298
Score = 30.4 bits (60), Expect(3) = 1e-036
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1 / +2
Query: 791 TDNEQAMLAGSYDILGINYYTSRFS 717
+ E L GS+D LG NYY++ F+
Sbjct: 2 SSEEAKDLKGSFDFLGFNYYSTDFT 76
>gb|AF072736.1|AF072736 Pinus contorta beta-glucosidase mRNA, complete cds
Length = 1909
Score = 95.5 bits (202), Expect(2) = 1e-035
Identities = 37/89 (41%), Positives = 60/89 (67%)
Frame = -1 / +3
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G +++++ ++Q+ L D +R+ + +S + +I G+DVRG+F WSLLDNFEW+ GY
Sbjct: 1410 GYPESEESSSTLQENLNDVRRIRFHGDCLSYLSAAIKNGSDVRGYFVWSLLDNFEWAFGY 1589
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLREF 237
T R+G+ +VD +RY K SA+W R+F
Sbjct: 1590 TIRFGLYHVDFISDQKRYPKLSAQWFRQF 1676
Score = 79.0 bits (166), Expect(2) = 1e-035
Identities = 35/85 (41%), Positives = 47/85 (55%)
Frame = -1 / +3
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G IGL P N+ + A +R L NL WFL+P+V GDYP MR RLP
Sbjct: 951 GSIGLVISAPWYEPLENSPEERSAVDRILSFNLRWFLDPIVFGDYPQEMRERLGSRLPSI 1130
Query: 791 TDNEQAMLAGSYDILGINYYTSRFS 717
+ A L GS+D +GIN+YT+ ++
Sbjct: 1131 SSELSAKLRGSFDYMGINHYTTLYA 1205
>gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_E07_A021 3', mRNA
sequence
Length = 587
Score = 145 bits (312), Expect(2) = 6e-035
Identities = 54/120 (45%), Positives = 81/120 (67%)
Frame = -1 / +2
Query: 599 WIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPLSMQDALEDYKRLDYLQRH 420
++Y+Y G+KDLL+ +K++Y NPPI+ITENG+ D ++ S+ +AL D R+ + H
Sbjct: 140 YLYVYAPGIKDLLIYIKHQYNNPPIFITENGVNDPIVNESTTSLDEALNDTGRISFCSEH 319
Query: 419 ISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAKWLRE 240
+ I E+I G+D+RG + WSL+DNFEWS GY +G Y+D DG +RY K SA W ++
Sbjct: 320 LWYILEAIREGSDIRGFYAWSLMDNFEWSLGYEC*FGFHYIDYKDGLKRYPKASAHWYKK 499
Score = 22.6 bits (43), Expect(2) = 6e-035
Identities = 6/10 (60%), Positives = 10/10 (100%)
Frame = -1 / +2
Query: 746 GINYYTSRFS 717
G+NYYTS+++
Sbjct: 2 GVNYYTSQYA 31
>gb|CF390174.1|CF390174 RTDR2_12_E07.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_E07_A021 5', mRNA
sequence
Length = 663
Score = 93.2 bits (197), Expect(2) = 2e-034
Identities = 33/85 (38%), Positives = 52/85 (61%)
Frame = -1 / +2
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G IG+ G PY + D+ A +R +D LGWF++P+ G YP +M+ RLP F
Sbjct: 107 GSIGITLVCNGTYPYSASLDDQNAAQRVIDFTLGWFMDPITSGSYPTTMKERIGNRLPKF 286
Query: 791 TDNEQAMLAGSYDILGINYYTSRFS 717
T+ + L G++D +G+NYYTS+++
Sbjct: 287 TEQQSQQLKGTFDFIGVNYYTSQYA 361
Score = 73.5 bits (154), Expect(2) = 2e-034
Identities = 25/61 (40%), Positives = 42/61 (68%)
Frame = -1 / +2
Query: 599 WIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPLSMQDALEDYKRLDYLQRH 420
++Y+Y G+KDLL+ +K++Y NPPI+ITENG+ D ++ S+ +AL D R+ + H
Sbjct: 470 YLYVYAPGIKDLLIYIKHQYNNPPIFITENGVNDPIVNESTTSLDEALNDTGRISFCSEH 649
Query: 419 I 417
+
Sbjct: 650 L 652
>gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 5', mRNA sequence
Length = 667
Score = 106 bits (226), Expect(2) = 4e-034
Identities = 38/78 (48%), Positives = 54/78 (69%)
Frame = -1 / +3
Query: 470 MQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYVDR 291
+ AL D KR++Y + ++ + E+I GADVRG+F WSL+DNFEW GYT+R+G+++VD
Sbjct: 162 LDQALNDTKRVNYFKGYLKALAEAIREGADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDY 341
Query: 290 DDGYRRYLKRSAKWLREF 237
D +RY K SA W F
Sbjct: 342 KDDLKRYPKSSAHWFTSF 395
Score = 59.3 bits (123), Expect(2) = 4e-034
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = -1 / +3
Query: 632 GNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTK 486
GN+IG + W+Y+ P G + +L + +Y PPIY+TENG+ D D++
Sbjct: 6 GNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSE 152
>gb|DR019596.1|DR019596 STRS1_31_D05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 3', mRNA sequence
Length = 865
Score = 85.4 bits (180), Expect(2) = 2e-032
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = -1 / -1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G+IG+ D + P N+ D+ A +RS D ++GWFL P+ G YP SM + RLP F
Sbjct: 844 GKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKF 665
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
T + M+ GS D LG+N YT+ +
Sbjct: 664 TKEQSQMVKGSIDYLGVNQYTAYY 593
Score = 77.1 bits (162), Expect(2) = 2e-032
Identities = 27/61 (44%), Positives = 44/61 (72%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+++ L D R++Y + ++ + +++ GA+V G+F WSLLDNFEW SGYT R+G++YV
Sbjct: 367 VTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYV 188
Query: 296 D 294
D
Sbjct: 187 D 185
>gb|DR052378.1|DR052378 RTCA1_4_F07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 3', mRNA sequence
Length = 865
Score = 85.4 bits (180), Expect(2) = 2e-032
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = -1 / +1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G+IG+ D + P N+ D+ A +RS D ++GWFL P+ G YP SM + RLP F
Sbjct: 16 GKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKF 195
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
T + M+ GS D LG+N YT+ +
Sbjct: 196 TKEQSQMVKGSIDYLGVNQYTAYY 267
Score = 77.1 bits (162), Expect(2) = 2e-032
Identities = 27/61 (44%), Positives = 44/61 (72%)
Frame = -1 / +1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+++ L D R++Y + ++ + +++ GA+V G+F WSLLDNFEW SGYT R+G++YV
Sbjct: 493 VTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYV 672
Query: 296 D 294
D
Sbjct: 673 D 675
>gb|DR094103.1|DR094103 STRR1_12_B03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 5', mRNA sequence
Length = 864
Score = 85.4 bits (180), Expect(2) = 2e-032
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = -1 / -1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G+IG+ D + P N+ D+ A +RS D ++GWFL P+ G YP SM + RLP F
Sbjct: 792 GKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKF 613
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
T + M+ GS D LG+N YT+ +
Sbjct: 612 TKKQSQMVKGSIDYLGVNQYTAYY 541
Score = 77.1 bits (162), Expect(2) = 2e-032
Identities = 27/61 (44%), Positives = 44/61 (72%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+++ L D R++Y + ++ + +++ GA+V G+F WSLLDNFEW SGYT R+G++YV
Sbjct: 315 VTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYV 136
Query: 296 D 294
D
Sbjct: 135 D 133
>gb|DR164307.1|DR164307 RTFE1_48_D09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_D09_A029 3', mRNA sequence
Length = 868
Score = 85.4 bits (180), Expect(2) = 2e-032
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = -1 / +3
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G+IG+ D + P N+ D+ A +RS D ++GWFL P+ G YP SM + RLP F
Sbjct: 27 GKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKF 206
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
T + M+ GS D LG+N YT+ +
Sbjct: 207 TKEQSQMVKGSIDYLGVNQYTAYY 278
Score = 77.1 bits (162), Expect(2) = 2e-032
Identities = 27/61 (44%), Positives = 44/61 (72%)
Frame = -1 / +3
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+++ L D R++Y + ++ + +++ GA+V G+F WSLLDNFEW SGYT R+G++YV
Sbjct: 504 VTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYV 683
Query: 296 D 294
D
Sbjct: 684 D 686
>gb|DR052459.1|DR052459 RTCA1_4_F07.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_F07_A029 5', mRNA sequence
Length = 932
Score = 85.4 bits (180), Expect(2) = 3e-032
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = -1 / +1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G+IG+ D + P N+ D+ A +RS D ++GWFL P+ G YP SM + RLP F
Sbjct: 157 GKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKF 336
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
T + M+ GS D LG+N YT+ +
Sbjct: 337 TKEQSQMVKGSIDYLGVNQYTAYY 408
Score = 77.1 bits (162), Expect(2) = 3e-032
Identities = 27/61 (44%), Positives = 44/61 (72%)
Frame = -1 / +1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+++ L D R++Y + ++ + +++ GA+V G+F WSLLDNFEW SGYT R+G++YV
Sbjct: 634 VTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYV 813
Query: 296 D 294
D
Sbjct: 814 D 816
>gb|DR081852.1|DR081852 RTFEPL1_32_F12.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_32_F12_A029 5', mRNA sequence
Length = 648
Score = 95.5 bits (202), Expect(2) = 1e-031
Identities = 39/85 (45%), Positives = 54/85 (63%)
Frame = -1 / +1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G IGL PY ++ D+ A +R++D LGWF++PV GDYPF+MR RL F
Sbjct: 112 GCIGLTLVCNWTYPYSSSQDDQNAAQRAVDFMLGWFIDPVTSGDYPFTMRDRLGDRLLKF 291
Query: 791 TDNEQAMLAGSYDILGINYYTSRFS 717
T+ E L GS+D LG+NYYTS+++
Sbjct: 292 TEQESEQLKGSFDFLGMNYYTSQYA 366
Score = 62.0 bits (129), Expect(2) = 1e-031
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = -1 / +1
Query: 599 WIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGD 498
W+Y+Y GL+DLL+ +K +Y NPPI+ITENG+ D
Sbjct: 475 WLYVYAPGLRDLLIYIKQRYNNPPIFITENGVND 576
>gb|CF392740.1|CF392740 RTDR3_5_G10.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_G10_A022 5', mRNA
sequence
Length = 741
Score = 105 bits (223), Expect(2) = 2e-030
Identities = 42/85 (49%), Positives = 56/85 (65%)
Frame = -1 / +2
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G IG+A V VPY N+ LD++A +R++D +GWFL P+ G YP SMRSL RLP F
Sbjct: 275 GSIGIALVVNWMVPYSNSLLDQEATQRAIDFRIGWFLYPLTSGKYPDSMRSLVGARLPLF 454
Query: 791 TDNEQAMLAGSYDILGINYYTSRFS 717
+ E L GS+D LG NYY++ F+
Sbjct: 455 SSEEAKDLKGSFDFLGFNYYSTDFT 529
Score = 47.8 bits (98), Expect(2) = 2e-030
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -1 / +2
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENG 507
+G +G G YP GL+D++ K++Y NPPIYITE G
Sbjct: 608 NGVYLGSDEGVSAFRSYPAGLRDVINYTKHRYNNPPIYITETG 736
>gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 3', mRNA sequence
Length = 734
Score = 109 bits (232), Expect(2) = 4e-030
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = -1 / +3
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G D + +++AL D +R++Y +H+S + E+I GADVRG+ WSLLDNFEW+SGY
Sbjct: 69 GYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGY 248
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLR 243
R+G+ Y+D +D +RY + SA W R
Sbjct: 249 DYRFGLYYIDYNDNLKRYARESAHWFR 329
Score = 42.8 bits (87), Expect(2) = 4e-030
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -1 / +3
Query: 575 LKDLLMIMKNKYGNPPIYITENGIGDVD 492
L+D++ K++Y NPPIYITE G D D
Sbjct: 3 LRDVINYTKHRYNNPPIYITETGYADFD 86
>gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 5', mRNA sequence
Length = 770
Score = 109 bits (232), Expect(2) = 8e-030
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = -1 / +3
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G D + +++AL D +R++Y +H+S + E+I GADVRG+ WSLLDNFEW+SGY
Sbjct: 75 GYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGY 254
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLR 243
R+G+ Y+D +D +RY + SA W R
Sbjct: 255 DYRFGLYYIDYNDNLKRYARESAHWFR 335
Score = 41.8 bits (85), Expect(2) = 8e-030
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1 / +3
Query: 575 LKDLLMIMKNKYGNPPIYITENGIGDVD 492
++D++ K++Y NPPIYITE G D D
Sbjct: 9 IRDVINYTKHRYNNPPIYITETGYADFD 92
>gb|DR093835.1|DR093835 STRR1_10_E06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_E06_A033 5', mRNA sequence
Length = 788
Score = 77.1 bits (162), Expect(2) = 3e-029
Identities = 27/61 (44%), Positives = 44/61 (72%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+++ L D R++Y + ++ + +++ GA+V G+F WSLLDNFEW SGYT R+G++YV
Sbjct: 356 VTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYV 177
Query: 296 D 294
D
Sbjct: 176 D 174
Score = 74.8 bits (157), Expect(2) = 3e-029
Identities = 30/68 (44%), Positives = 42/68 (61%)
Frame = -1 / -1
Query: 923 NTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILG 744
N+ D+ A +RS D ++GWFL P+ G YP SM + RLP FT + M+ GS D LG
Sbjct: 785 NSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKKQSQMVKGSIDYLG 606
Query: 743 INYYTSRF 720
+N YT+ +
Sbjct: 605 VNQYTAYY 582
>gb|DR019670.1|DR019670 STRS1_31_D05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_D05_A034 5', mRNA sequence
Length = 756
Score = 77.1 bits (162), Expect(2) = 5e-029
Identities = 27/61 (44%), Positives = 44/61 (72%)
Frame = -1 / -1
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+++ L D R++Y + ++ + +++ GA+V G+F WSLLDNFEW SGYT R+G++YV
Sbjct: 339 VTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYV 160
Query: 296 D 294
D
Sbjct: 159 D 157
Score = 73.9 bits (155), Expect(2) = 5e-029
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = -1 / -1
Query: 911 DEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYY 732
D+ A +RS D ++GWFL P+ G YP SM + RLP FT + M+ GS D LG+N Y
Sbjct: 756 DQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQY 577
Query: 731 TSRF 720
T+ +
Sbjct: 576 TAYY 565
>gb|DR019640.1|DR019640 STRS1_31_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_31_H11_A034 3', mRNA sequence
Length = 794
Score = 77.1 bits (162), Expect(2) = 5e-029
Identities = 27/61 (44%), Positives = 44/61 (72%)
Frame = -1 / +2
Query: 476 LSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYV 297
+++ L D R++Y + ++ + +++ GA+V G+F WSLLDNFEW SGYT R+G++YV
Sbjct: 422 VTLPAGLNDTIRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYV 601
Query: 296 D 294
D
Sbjct: 602 D 604
Score = 73.9 bits (155), Expect(2) = 5e-029
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = -1 / +2
Query: 911 DEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYY 732
D+ A +RS D ++GWFL P+ G YP SM + RLP FT + M+ GS D LG+N Y
Sbjct: 5 DQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKFTKEQSQMVKGSIDYLGVNQY 184
Query: 731 TSRF 720
T+ +
Sbjct: 185 TAYY 196
>gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_101_H03 5' similar to Arabidopsis thaliana
sequence At5g54570 beta-glucosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 74.8 bits (157), Expect(3) = 6e-029
Identities = 27/47 (57%), Positives = 34/47 (72%)
Frame = -1 / +2
Query: 389 GADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAKW 249
G DVRG+F WSLLDN+EW+SG+T R+G+ +VD RY K SA W
Sbjct: 398 GCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYXXNLTRYPKASADW 538
Score = 59.3 bits (123), Expect(3) = 6e-029
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = -1 / +2
Query: 632 GNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDT 489
G IG + W+Y+ P G++ L++ +K +Y NPPI+ITENGI D ++
Sbjct: 158 GVMIGERGASRWLYVVPWGIRSLMIYIKQRYDNPPIFITENGIDDTNS 301
Score = 31.8 bits (63), Expect(3) = 6e-029
Identities = 9/26 (34%), Positives = 21/26 (80%)
Frame = -1 / +2
Query: 788 DNEQAMLAGSYDILGINYYTSRFSKH 711
+++ +L GS+D +GIN+YT+ ++++
Sbjct: 2 NDQSKLLRGSFDFVGINHYTTIYTRN 79
>gb|CX712929.1|CX712929 RTPQ1_5_F12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_5_F12_A032 5', mRNA sequence
Length = 836
Score = 95.0 bits (201), Expect(3) = 5e-028
Identities = 37/89 (41%), Positives = 60/89 (67%)
Frame = -1 / +3
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G +++++ ++Q+ L D +R+ + +S + +I G+DVRG+F WSLLDNFEW+ GY
Sbjct: 369 GYPESEESSSTLQENLNDVRRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGY 548
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLREF 237
T R+G+ +VD +RY K SA+W R+F
Sbjct: 549 TIRFGLYHVDFISDQKRYPKLSAQWFRQF 635
Score = 50.1 bits (103), Expect(3) = 5e-028
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -1 / +3
Query: 854 VVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFS 717
+V GDYP MR RLP + A L GS+D +GIN+YT+ ++
Sbjct: 27 IVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTTLYA 164
Score = 22.1 bits (42), Expect(3) = 5e-028
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3 / +2
Query: 537 KPAYLYHRER 508
+P Y YHRER
Sbjct: 341 QPDYYYHRER 370
>gb|CO199421.1|CO199421 GEO2_1_C06.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_C06_A032 3', mRNA sequence
Length = 870
Score = 99.6 bits (211), Expect(2) = 1e-027
Identities = 40/87 (45%), Positives = 54/87 (62%)
Frame = -1 / +3
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G D + +Q AL D RL Y H+S + +SI GADVRG+ WSL+D+FEWSSGY
Sbjct: 318 GYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQSIKEGADVRGYIAWSLMDSFEWSSGY 497
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLR 243
R+G+ +VD D +RY + SA W +
Sbjct: 498 NYRFGLYHVDYKDNLKRYPRSSAHWFK 578
Score = 46.9 bits (96), Expect(2) = 1e-027
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = -1 / +3
Query: 827 MRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFS 717
+R L + RLP FT E L GS+D LG NYYT++++
Sbjct: 3 VRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTTQYT 113
>gb|CO169436.1|CO169436 NDL1_7_C03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_C03_A029 3', mRNA sequence
Length = 795
Score = 85.4 bits (180), Expect(2) = 2e-027
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = -1 / -2
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G+IG+ D + P N+ D+ A +RS D ++GWFL P+ G YP SM + RLP F
Sbjct: 563 GKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKF 384
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
T + M+ GS D LG+N YT+ +
Sbjct: 383 TKEQSQMVKGSIDYLGVNQYTAYY 312
Score = 57.9 bits (120), Expect(2) = 2e-027
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = -1 / -2
Query: 656 TAEIFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNP 477
T + +G IGP + W+Y+ P GL + +K YGNP + ++ENG+ D P
Sbjct: 254 TGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 75
Query: 476 LSMQDALEDYKRLDYLQRHISVI 408
+ D + YLQ I+ +
Sbjct: 74 AGLNDTIRVNYYKSYLQNLINAV 6
>gb|DT636173.1|DT636173 EST1151104 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGO78 3' end, mRNA sequence
Length = 706
Score = 82.6 bits (174), Expect(2) = 2e-027
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = -1 / +2
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G IG+ D P+ + D++A +R + GWFL+P+ GDYP MR RLP F
Sbjct: 143 GVIGITVDGEWAEPFTDAEGDKEAAQRRREFQFGWFLDPIYFGDYPAIMRKKLGDRLPQF 322
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
+ +E A+L GS D LG+N+YT+R+
Sbjct: 323 SPDEVAVLRGSSDFLGLNHYTTRY 394
Score = 60.2 bits (125), Expect(2) = 2e-027
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = -1 / +2
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTK 486
+GN+IG + W+Y+ P G + +L + +Y PPIY+TENG+ D D++
Sbjct: 470 EGNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSE 619
>gb|DR387566.1|DR387566 RTHG1_22_E08.g2_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_22_E08_A029 5', mRNA sequence
Length = 607
Score = 82.6 bits (174), Expect(2) = 2e-027
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = -1 / -1
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G IG+ D P+ + D++A +R + GWFL+P+ GDYP MR RLP F
Sbjct: 517 GVIGITVDGEWAEPFTDAEGDKEAAQRRREFQFGWFLDPIYFGDYPAIMRKKLGDRLPQF 338
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
+ +E A+L GS D LG+N+YT+R+
Sbjct: 337 SPDEVAVLRGSSDFLGLNHYTTRY 266
Score = 60.2 bits (125), Expect(2) = 2e-027
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = -1 / -1
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTK 486
+GN+IG + W+Y+ P G + +L + +Y PPIY+TENG+ D D++
Sbjct: 190 EGNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSE 41
>gb|DR094032.1|DR094032 STRR1_12_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_B03_A033 3', mRNA sequence
Length = 910
Score = 85.4 bits (180), Expect(2) = 4e-027
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = -1 / -2
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G+IG+ D + P N+ D+ A +RS D ++GWFL P+ G YP SM + RLP F
Sbjct: 552 GKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPKF 373
Query: 791 TDNEQAMLAGSYDILGINYYTSRF 720
T + M+ GS D LG+N YT+ +
Sbjct: 372 TKKQSQMVKGSIDYLGVNQYTAYY 301
Score = 56.5 bits (117), Expect(2) = 4e-027
Identities = 25/81 (30%), Positives = 39/81 (48%)
Frame = -1 / -2
Query: 656 TAEIFGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNP 477
T + +G IGP + W+Y+ P GL + +K YGNP + ++ENG+ D P
Sbjct: 243 TGFAYARNGVPIGPRANSNWLYIVPWGLYKAVTYVKEHYGNPTMILSENGMDDPGNVTLP 64
Query: 476 LSMQDALEDYKRLDYLQRHIS 414
+ D + YLQ I+
Sbjct: 63 AGLNDTIRVNYYKSYLQNLIN 1
>gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 3', mRNA sequence
Length = 751
Score = 71.6 bits (150), Expect(3) = 9e-027
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = -1 / +1
Query: 389 GADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAKWLREF 237
G +V G+F WSLLDN+EW++GYT R+G+ +VD RY K S +W + F
Sbjct: 397 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCF 549
Score = 59.3 bits (123), Expect(3) = 9e-027
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = -1 / +1
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGD 498
+G +IG + W+Y+ P G++ L+ +K +Y NPP+ ITENG+ D
Sbjct: 154 NGRAIGDKASSAWLYIVPHGIRSLMNYIKRRYNNPPVIITENGMDD 291
Score = 27.6 bits (54), Expect(3) = 9e-027
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1 / +1
Query: 782 EQAMLAGSYDILGINYYTSRFSKH 711
E + GS D +GIN+YT+ ++++
Sbjct: 7 ESNRVKGSLDFVGINHYTTYYARN 78
>gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D02_A029 5', mRNA sequence
Length = 849
Score = 87.2 bits (184), Expect(2) = 2e-026
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = -1 / -3
Query: 389 GADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAKWLREF 237
GAD+RG+ WSLLDNFEW+ GY R+G+ YVD D +RY K SA W REF
Sbjct: 376 GADIRGYLVWSLLDNFEWAHGYNYRFGLYYVDYKDNLKRYPKASANWFREF 224
Score = 55.1 bits (114), Expect(2) = 2e-026
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -1 / -1
Query: 587 YPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPL 474
YP GLKD++ K++Y NPP+Y+TE G D D PL
Sbjct: 654 YPAGLKDIINYTKHRYNNPPLYVTETGYADFDDGTTPL 541
>gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D02_A029 3', mRNA sequence
Length = 863
Score = 87.2 bits (184), Expect(2) = 2e-026
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = -1 / -3
Query: 389 GADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAKWLREF 237
GAD+RG+ WSLLDNFEW+ GY R+G+ YVD D +RY K SA W REF
Sbjct: 387 GADIRGYLVWSLLDNFEWAHGYNYRFGLYYVDYKDNLKRYPKASANWFREF 235
Score = 55.1 bits (114), Expect(2) = 2e-026
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -1 / -1
Query: 587 YPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPL 474
YP GLKD++ K++Y NPP+Y+TE G D D PL
Sbjct: 665 YPAGLKDIINYTKHRYNNPPLYVTETGYADFDDGTTPL 552
>gb|DR743165.1|DR743165 RTCU1_14_B08.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_14_B08_A029 3', mRNA sequence
Length = 761
Score = 84.9 bits (179), Expect(2) = 1e-025
Identities = 36/100 (36%), Positives = 58/100 (58%)
Frame = -1 / +2
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G + ++ + + +AL D R+D Q + + +I G+DVRG+F W+LLD+FE GY
Sbjct: 341 GFSEHNNSSIPLSEALNDQFRMDLHQDVLQYVLAAIRNGSDVRGYFIWTLLDDFEVLDGY 520
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLREFNGAAKKAEKKV 204
T +G+ YVD +D +RY K SA W + F + E ++
Sbjct: 521 TRSFGLHYVDFNDNLKRYPKLSAHWYKTFLQRRESRESRL 640
Score = 55.1 bits (114), Expect(2) = 1e-025
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = -1 / +2
Query: 857 PVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYY 732
P V GDYP SMR++ RLP FT + L GS D +G+N+Y
Sbjct: 2 PFVSGDYPGSMRNIVGSRLPSFTKEQTQKLQGSLDFIGVNHY 127
>gb|DR081789.1|DR081789 RTFEPL1_32_F12.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_32_F12_A029 3', mRNA sequence
Length = 674
Score = 115 bits (245), Expect = 6e-025
Identities = 44/93 (47%), Positives = 59/93 (63%)
Frame = -1 / +2
Query: 515 ENGIGDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEW 336
ENG+ D +++ S+ + L D R++Y H+ I +I GADVRG F WSL+DNFEW
Sbjct: 2 ENGVNDFPVENSDPSLDEGLNDTWRINYCSEHLHYIL*AIREGADVRGFFAWSLMDNFEW 181
Query: 335 SSGYTERYGIIYVDRDDGYRRYLKRSAKWLREF 237
GYT R+G IY+D DG +RY K SA W + F
Sbjct: 182 GFGYTSRFGFIYIDYKDGLKRYPKASAHWYKRF 280
>gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E12_A029 5', mRNA sequence
Length = 858
Score = 93.2 bits (197), Expect(2) = 9e-025
Identities = 37/89 (41%), Positives = 59/89 (66%)
Frame = -1 / -3
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G ++++ ++Q+ L D +R+ + +S + +I G+DVRG+F WSLLDNFEW+ GY
Sbjct: 613 GYPESQEFSSTLQENLNDVRRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGY 434
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLREF 237
T R+G+ +VD +RY K SA+W R+F
Sbjct: 433 TIRFGLYHVDFISDQKRYPKLSAQWFRQF 347
Score = 40.9 bits (83), Expect(2) = 9e-025
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1 / -3
Query: 632 GNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENG 507
G SIG G +++ P G++ ++ +K Y NP I ITENG
Sbjct: 736 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENG 611
>gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clone RS67H05, mRNA sequence
Length = 585
Score = 75.8 bits (159), Expect(3) = 1e-024
Identities = 30/69 (43%), Positives = 43/69 (62%)
Frame = -1 / +1
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G D + ++ AL D R+ Y H+S + + I GADVRG+ WSL+D+FEWSSGY
Sbjct: 379 GYADFDNGTTLLERALNDSGRMKYHSEHLSHLLQGIKDGADVRGYIIWSLMDSFEWSSGY 558
Query: 323 TERYGIIYV 297
R+G+ +V
Sbjct: 559 NYRFGLYHV 585
Score = 48.3 bits (99), Expect(3) = 1e-024
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = -1 / +1
Query: 587 YPKGLKDLLMIMKNKYGNPPIYITENGIGDVD 492
YP GL+ ++ K++Y NPPIYITE G D D
Sbjct: 301 YPAGLRGVINYTKHRYNNPPIYITETGYADFD 396
Score = 30.9 bits (61), Expect(3) = 1e-024
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1 / +3
Query: 770 LAGSYDILGINYYTSRFS 717
L GS+D LG NYYT+ ++
Sbjct: 9 LKGSFDFLGYNYYTTHYT 62
>gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_36_C02_A029 3', mRNA sequence
Length = 649
Score = 71.2 bits (149), Expect(2) = 2e-024
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = -1 / +2
Query: 389 GADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAKWLREF 237
G +V G+F WSLLDN+EW++GYT R+G+ +VD RY K S +W + F
Sbjct: 254 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKDSVQWFKCF 406
Score = 61.6 bits (128), Expect(2) = 2e-024
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = -1 / +2
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGD 498
DG +IG + W+Y+ P+G++ L+ +K +Y NPP+ ITENG+ D
Sbjct: 11 DGKAIGDKASSIWLYIVPQGIRSLMNYIKQRYNNPPVIITENGMDD 148
>gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_4_C03_A029 3', mRNA sequence
Length = 548
Score = 94.5 bits (200), Expect(2) = 2e-024
Identities = 37/87 (42%), Positives = 55/87 (63%)
Frame = -1 / +2
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G D + ++ +L+D KR+ Y +H+S + ++I GADVRG+ W+LLDNFEW +GY
Sbjct: 179 GYADFDNGTTPLKKSLQDSKRVKYHYQHLSNLLKAIREGADVRGYIVWALLDNFEWFNGY 358
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLR 243
R+G+ YVD +RY K SA W +
Sbjct: 359 NVRFGLNYVDYRHNLKRYAKASAYWFK 439
Score = 38.2 bits (77), Expect(2) = 2e-024
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1 / +1
Query: 644 FGPDGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPP 528
F +G+ IG G YPKG++D++ K++Y NPP
Sbjct: 43 FEINGDVIGSNEGISAFRSYPKGIRDVINYTKHRYNNPP 159
>gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP097C12, mRNA sequence
Length = 664
Score = 78.5 bits (165), Expect(2) = 3e-024
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = -1 / +2
Query: 389 GADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRDDGYRRYLKRSAKWLREF 237
G DVRG+F WSLLDN+EW+SG+T R+G+ +VD RY K SA W + F
Sbjct: 344 GCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADWFKSF 496
Score = 53.8 bits (111), Expect(2) = 3e-024
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -1 / +2
Query: 632 GNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGD 498
G IG + W+Y+ P G++ ++ +K +Y NPPI ITENGI D
Sbjct: 104 GVMIGERGASRWLYVVPWGIRSSMIYIKQRYDNPPIIITENGIDD 238
>gb|DR744730.1|DR744730 RTCU1_24_B09.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B09_A029 5', mRNA sequence
Length = 742
Score = 66.1 bits (138), Expect(3) = 4e-024
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = -1 / +3
Query: 866 FLEPVVRGDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFS 717
FL+P+V G YP S+R L + RLP FT E L GS+D LG NYYT++++
Sbjct: 378 FLDPLVLGKYPDSVRRLVKSRLPRFTAKEAKELKGSFDFLGYNYYTTQYT 527
Score = 49.2 bits (101), Expect(3) = 4e-024
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = -1 / +3
Query: 635 DGNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENG 507
+G IG G YP GL+D++ +K++Y NPPIYITE G
Sbjct: 606 NGVYIGSDEGVSDFRSYPAGLRDVINYIKHRYNNPPIYITETG 734
Score = 34.1 bits (68), Expect(3) = 4e-024
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1 / +3
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWF 864
G IG+ + VP+ + LD++A R+ D +GW+
Sbjct: 237 GSIGIVLVLSWVVPFSKSKLDQRAARRAFDFRIGWY 344
>gb|CO162287.1|CO162287 FLD1_34_H05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H05_A029 3', mRNA sequence
Length = 718
Score = 79.0 bits (166), Expect(3) = 2e-023
Identities = 35/85 (41%), Positives = 47/85 (55%)
Frame = -1 / -3
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G IGL P N+ + A +R L NL WFL+P+V GDYP MR RLP
Sbjct: 596 GSIGLVISAPWYEPLENSPEERSAVDRILSFNLRWFLDPIVFGDYPQEMRERLGSRLPSI 417
Query: 791 TDNEQAMLAGSYDILGINYYTSRFS 717
+ A L GS+D +GIN+YT+ ++
Sbjct: 416 SSELSAKLRGSFDYMGINHYTTLYA 342
Score = 41.8 bits (85), Expect(3) = 2e-023
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -1 / -3
Query: 632 GNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPL 474
G SIG G +++ P G++ ++ +K Y NP I ITENG + + + L
Sbjct: 260 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTL 102
Score = 26.7 bits (52), Expect(3) = 2e-023
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1 / -2
Query: 458 LEDYKRLDYLQRHISVIKESIDLGADVRGHF 366
L D +R+ + +S + +I G+DVRG+F
Sbjct: 93 LNDVRRIRFHGDCLSYLNAAIKNGSDVRGYF 1
>gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 3', mRNA sequence
Length = 786
Score = 110 bits (234), Expect = 2e-023
Identities = 43/87 (49%), Positives = 56/87 (64%)
Frame = -1 / +2
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G VD D ++ AL D +R+ Y H+S + E+I GAD+RG+ WSLLDNFEWS GY
Sbjct: 236 GYVDFDDGKTPLEQALNDSRRVMYHSEHLSELLEAISEGADIRGYLVWSLLDNFEWSFGY 415
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLR 243
T R+G+ YVD D +RY + SA W R
Sbjct: 416 TYRFGLYYVDYKDNLKRYPRASANWFR 496
>gb|CF390846.1|CF390846 RTDR3_2_H05.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_H05_A022 3', mRNA
sequence
Length = 631
Score = 109 bits (232), Expect = 4e-023
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = -1 / +1
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G D + +++AL D +R++Y +H+S + E+I GADVRG+ WSLLDNFEW+SGY
Sbjct: 13 GYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGY 192
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLR 243
R+G+ Y+D +D +RY + SA W R
Sbjct: 193 DYRFGLYYIDYNDNLKRYARESAHWFR 273
>gb|CF392633.1|CF392633 RTDR3_5_G10.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_G10_A022 3', mRNA
sequence
Length = 615
Score = 109 bits (232), Expect = 4e-023
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = -1 / +1
Query: 503 GDVDTKDNPLSMQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGY 324
G D + +++AL D +R++Y +H+S + E+I GADVRG+ WSLLDNFEW+SGY
Sbjct: 10 GYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGY 189
Query: 323 TERYGIIYVDRDDGYRRYLKRSAKWLR 243
R+G+ Y+D +D +RY + SA W R
Sbjct: 190 DYRFGLYYIDYNDNLKRYARESAHWFR 270
>gb|CF390924.1|CF390924 RTDR3_2_H05.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_H05_A022 5', mRNA
sequence
Length = 685
Score = 106 bits (227), Expect = 2e-022
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = -1 / +3
Query: 971 GRIGLAFDVMGRVPYGNTFLDEQAQERSLDQNLGWFLEPVVRGDYPFSMRSLARKRLPFF 792
G IG+A V VPY N+ LD++A +R++D +GWFL+P+ G YP SMRSL RLP F
Sbjct: 333 GSIGIALVVNWMVPYSNSLLDQEATQRAIDFRIGWFLDPLTSGKYPDSMRSLVGARLPLF 512
Query: 791 TDNEQAMLAGSYDILGINYYTSRFS 717
+ E L GS+D LG NYY++ F+
Sbjct: 513 SSEEAKDLKGSFDFLGFNYYSTDFT 587
>gb|CF392313.1|CF392313 RTDR3_7_B01.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_7_B01_A022 3', mRNA
sequence
Length = 529
Score = 106 bits (226), Expect = 3e-022
Identities = 38/75 (50%), Positives = 55/75 (73%)
Frame = -1 / +1
Query: 467 QDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYVDRD 288
++AL D +R++Y +H+S + E+I GADVRG+ WSLLDNFEW+SGY R+G+ Y+D +
Sbjct: 1 EEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGYDYRFGLYYIDYN 180
Query: 287 DGYRRYLKRSAKWLR 243
D +RY + SA W R
Sbjct: 181 DNLKRYARESAHWFR 225
>gb|DR048637.1|DR048637 RTBOR1_10_E10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 3', mRNA sequence
Length = 837
Score = 106 bits (226), Expect = 3e-022
Identities = 38/78 (48%), Positives = 54/78 (69%)
Frame = -1 / +2
Query: 470 MQDALEDYKRLDYLQRHISVIKESIDLGADVRGHFTWSLLDNFEWSSGYTERYGIIYVDR 291
+ AL D KR++Y + ++ + E+I GADVRG+F WSL+DNFEW GYT+R+G+++VD
Sbjct: 32 LDQALNDTKRVNYFKGYLKALAEAIREGADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDY 211
Query: 290 DDGYRRYLKRSAKWLREF 237
D +RY K SA W F
Sbjct: 212 KDDLKRYPKSSAHWFTSF 265
>gb|DR685831.1|DR685831 EST1075908 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB853 3' end, mRNA sequence
Length = 526
Score = 52.4 bits (108), Expect(3) = 5e-022
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1 / +3
Query: 392 LGADVRGHFTWSLLDNFEWSSGYTER 315
+G+DVRG+F WSLLD FEW+ GYT R
Sbjct: 447 MGSDVRGYFVWSLLDKFEWAFGYTIR 524
Score = 48.3 bits (99), Expect(3) = 5e-022
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = -1 / +1
Query: 845 GDYPFSMRSLARKRLPFFTDNEQAMLAGSYDILGINYYTSRFS 717
GDYP MR RLP + A L GS+D +GIN+YT+ ++
Sbjct: 1 GDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTTLYA 129
Score = 41.8 bits (85), Expect(3) = 5e-022
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -1 / +2
Query: 632 GNSIGPPMGNPWIYMYPKGLKDLLMIMKNKYGNPPIYITENGIGDVDTKDNPL 474
G SIG G +++ P G++ ++ +K Y NP I ITENG + + + L
Sbjct: 212 GVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENGYPESEESSSTL 370
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 466,595,420
Number of Sequences: 355925
Number of extensions: 6108201
Number of successful extensions: 31575
Number of sequences better than 1.0e-020: 60
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 14568787840
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)