TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 129373.2.1
(1297 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO369119.1|CO369119 RTK1_45_C04.b1_A029 Roots minus pota... 76 2e-024
gb|DR693404.1|DR693404 EST1083492 Normalized pine embryo li... 76 2e-024
gb|CV032879.1|CV032879 RTNACL1_18_H04.g1_A029 Roots plus ad... 76 2e-024
gb|DT636060.1|DT636060 EST1150991 Normalized pine embryo li... 76 2e-024
gb|DR690248.1|DR690248 EST1080334 Normalized pine embryo li... 76 2e-024
gb|CF388774.1|CF388774 RTDR2_15_F02.g1_A021 Loblolly pine r... 76 2e-024
gb|DR388992.1|DR388992 RTHG1_31_F04.g1_A029 Roots plus adde... 76 2e-024
gb|BQ699269.1|BQ699269 NXRV121_E11_F NXRV (Nsf Xylem Root w... 76 2e-024
gb|DR687767.1|DR687767 EST1077849 Normalized pine embryo li... 67 5e-023
gb|DR011575.1|DR011575 HEAT1_6_C06.g1_A029 Root at 37 C for... 67 5e-023
gb|DR688226.1|DR688226 EST1078310 Normalized pine embryo li... 67 5e-023
gb|DR691906.1|DR691906 EST1081993 Normalized pine embryo li... 67 5e-023
gb|DT634547.1|DT634547 EST1149478 Normalized pine embryo li... 67 5e-023
gb|BG039607.1|BG039607 NXSI_102_A09_F NXSI (Nsf Xylem Side ... 67 5e-023
gb|BQ702164.1|BQ702164 NXSI_125_F08_F NXSI (Nsf Xylem Side ... 67 5e-023
gb|DR694249.1|DR694249 EST1084340 Normalized pine embryo li... 65 2e-022
gb|DR015958.1|DR015958 STRS1_6_F06.g1_A034 Shoot tip pitch ... 76 3e-022
gb|CF475551.1|CF475551 RTWW2_12_H02.g1_A021 Well-watered lo... 67 4e-022
>gb|CO369119.1|CO369119 RTK1_45_C04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_45_C04_A029 3', mRNA sequence
Length = 851
Score = 76.2 bits (160), Expect(2) = 2e-024
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -1 / -3
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+++ +YV VD KK +GTLS K QI DLVF KEF+LSHTS+T SVF SGY
Sbjct: 504 AKENERVSLYVHVDGKKFVLGTLSRGKCDQIGLDLVFEKEFKLSHTSQTGSVFVSGY 334
Score = 57.4 bits (119), Expect(2) = 2e-024
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = -1 / -3
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
MEFWG+EVKPG + C+PG LH+SQAA+G+ +
Sbjct: 612 MEFWGVEVKPGEALTCDPGDERYLHMSQAAIGDKE 508
>gb|DR693404.1|DR693404 EST1083492 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADY71 3' end, mRNA sequence
Length = 786
Score = 76.2 bits (160), Expect(2) = 2e-024
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -1 / +1
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+++ +YV VD KK +GTLS K QI DLVF KEF+LSHTS+T SVF SGY
Sbjct: 220 AKENERVSLYVHVDGKKFVLGTLSRGKCDQIGLDLVFEKEFKLSHTSQTGSVFVSGY 390
Score = 57.4 bits (119), Expect(2) = 2e-024
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
MEFWG+EVKPG + C+PG LH+SQAA+G+ +
Sbjct: 112 MEFWGVEVKPGEALTCDPGDERYLHMSQAAIGDKE 216
>gb|CV032879.1|CV032879 RTNACL1_18_H04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H04_A029 5', mRNA sequence
Length = 782
Score = 76.2 bits (160), Expect(2) = 2e-024
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -1 / +1
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+++ +YV VD KK +GTLS K QI DLVF KEF+LSHTS+T SVF SGY
Sbjct: 337 AKENERVSLYVHVDGKKFVLGTLSRGKCDQIGLDLVFEKEFKLSHTSQTGSVFVSGY 507
Score = 57.4 bits (119), Expect(2) = 2e-024
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
MEFWG+EVKPG + C+PG LH+SQAA+G+ +
Sbjct: 229 MEFWGVEVKPGEALTCDPGDERYLHMSQAAIGDKE 333
>gb|DT636060.1|DT636060 EST1150991 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGN58 3' end, mRNA sequence
Length = 769
Score = 76.2 bits (160), Expect(2) = 2e-024
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -1 / +2
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+++ +YV VD KK +GTLS K QI DLVF KEF+LSHTS+T SVF SGY
Sbjct: 209 AKENERVSLYVHVDGKKFVLGTLSRGKCDQIGLDLVFEKEFKLSHTSQTGSVFVSGY 379
Score = 57.4 bits (119), Expect(2) = 2e-024
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = -1 / +2
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
MEFWG+EVKPG + C+PG LH+SQAA+G+ +
Sbjct: 101 MEFWGVEVKPGEALTCDPGDERYLHMSQAAIGDKE 205
>gb|DR690248.1|DR690248 EST1080334 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACS86 3' end, mRNA sequence
Length = 754
Score = 76.2 bits (160), Expect(2) = 2e-024
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -1 / +1
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+++ +YV VD KK +GTLS K QI DLVF KEF+LSHTS+T SVF SGY
Sbjct: 124 AKENERVSLYVHVDGKKFVLGTLSRGKCDQIGLDLVFEKEFKLSHTSQTGSVFVSGY 294
Score = 57.4 bits (119), Expect(2) = 2e-024
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
MEFWG+EVKPG + C+PG LH+SQAA+G+ +
Sbjct: 16 MEFWGVEVKPGEALTCDPGDERYLHMSQAAIGDKE 120
>gb|CF388774.1|CF388774 RTDR2_15_F02.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_15_F02_A021 5', mRNA
sequence
Length = 685
Score = 76.2 bits (160), Expect(2) = 2e-024
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -1 / +3
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+++ +YV VD KK +GTLS K QI DLVF KEF+LSHTS+T SVF SGY
Sbjct: 321 AKENERVSLYVHVDGKKFVLGTLSRGKCDQIGLDLVFEKEFKLSHTSQTGSVFVSGY 491
Score = 57.4 bits (119), Expect(2) = 2e-024
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = -1 / +3
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
MEFWG+EVKPG + C+PG LH+SQAA+G+ +
Sbjct: 213 MEFWGVEVKPGEALTCDPGDERYLHMSQAAIGDKE 317
>gb|DR388992.1|DR388992 RTHG1_31_F04.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_31_F04_A029 5', mRNA sequence
Length = 606
Score = 76.2 bits (160), Expect(2) = 2e-024
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -1 / +1
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+++ +YV VD KK +GTLS K QI DLVF KEF+LSHTS+T SVF SGY
Sbjct: 244 AKENERVSLYVHVDGKKFVLGTLSRGKCDQIGLDLVFEKEFKLSHTSQTGSVFVSGY 414
Score = 57.4 bits (119), Expect(2) = 2e-024
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
MEFWG+EVKPG + C+PG LH+SQAA+G+ +
Sbjct: 136 MEFWGVEVKPGEALTCDPGDERYLHMSQAAIGDKE 240
>gb|BQ699269.1|BQ699269 NXRV121_E11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_E11 5' similar to Arabidopsis thaliana
sequence At5g03740 histone deacetylase -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 566
Score = 76.2 bits (160), Expect(2) = 2e-024
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -1 / +3
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+++ +YV VD KK +GTLS K QI DLVF KEF+LSHTS+T SVF SGY
Sbjct: 210 AKENERVSLYVHVDGKKFVLGTLSRGKCDQIGLDLVFEKEFKLSHTSQTGSVFVSGY 380
Score = 57.4 bits (119), Expect(2) = 2e-024
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = -1 / +3
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
MEFWG+EVKPG + C+PG LH+SQAA+G+ +
Sbjct: 102 MEFWGVEVKPGEALTCDPGDERYLHMSQAAIGDKE 206
>gb|DR687767.1|DR687767 EST1077849 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABW34 3' end, mRNA sequence
Length = 833
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+S+ AL+ V VD+KK+ +G L+ K Q D++F+K F+LSH+ T SVFF GY
Sbjct: 178 AKESERALLNVHVDNKKVVLGVLTYGKCDQFSLDIMFSKPFKLSHSCTTGSVFFIGY 348
Score = 62.0 bits (129), Expect(2) = 5e-023
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGE 1085
MEFWG+EVKPG C+PG G LH+SQAALGE
Sbjct: 70 MEFWGVEVKPGEVQSCDPGDGKYLHLSQAALGE 168
>gb|DR011575.1|DR011575 HEAT1_6_C06.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_6_C06_A029 5', mRNA sequence
Length = 781
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = -1 / +2
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+S+ AL+ V VD+KK+ +G L+ K Q D++F+K F+LSH+ T SVFF GY
Sbjct: 236 AKESERALLNVHVDNKKVVLGVLTYGKCDQFSLDIMFSKPFKLSHSCTTGSVFFIGY 406
Score = 62.0 bits (129), Expect(2) = 5e-023
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / +2
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGE 1085
MEFWG+EVKPG C+PG G LH+SQAALGE
Sbjct: 128 MEFWGVEVKPGEVQSCDPGDGKYLHLSQAALGE 226
>gb|DR688226.1|DR688226 EST1078310 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC343 3' end, mRNA sequence
Length = 774
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+S+ AL+ V VD+KK+ +G L+ K Q D++F+K F+LSH+ T SVFF GY
Sbjct: 178 AKESERALLNVHVDNKKVVLGVLTYGKCDQFSLDIMFSKPFKLSHSCTTGSVFFIGY 348
Score = 62.0 bits (129), Expect(2) = 5e-023
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGE 1085
MEFWG+EVKPG C+PG G LH+SQAALGE
Sbjct: 70 MEFWGVEVKPGEVQSCDPGDGKYLHLSQAALGE 168
>gb|DR691906.1|DR691906 EST1081993 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADF52 3' end, mRNA sequence
Length = 769
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+S+ AL+ V VD+KK+ +G L+ K Q D++F+K F+LSH+ T SVFF GY
Sbjct: 178 AKESERALLNVHVDNKKVVLGVLTYGKCDQFSLDIMFSKPFKLSHSCTTGSVFFIGY 348
Score = 62.0 bits (129), Expect(2) = 5e-023
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGE 1085
MEFWG+EVKPG C+PG G LH+SQAALGE
Sbjct: 70 MEFWGVEVKPGEVQSCDPGDGKYLHLSQAALGE 168
>gb|DT634547.1|DT634547 EST1149478 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG716 3' end, mRNA sequence
Length = 755
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+S+ AL+ V VD+KK+ +G L+ K Q D++F+K F+LSH+ T SVFF GY
Sbjct: 178 AKESERALLNVHVDNKKVVLGVLTYGKCDQFSLDIMFSKPFKLSHSCTTGSVFFIGY 348
Score = 62.0 bits (129), Expect(2) = 5e-023
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGE 1085
MEFWG+EVKPG C+PG G LH+SQAALGE
Sbjct: 70 MEFWGVEVKPGEVQSCDPGDGKYLHLSQAALGE 168
>gb|BG039607.1|BG039607 NXSI_102_A09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_102_A09 5' similar to Arabidopsis thaliana
sequence At3g44750 histone deacetylase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 553
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = -1 / +3
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+S+ AL+ V VD+KK+ +G L+ K Q D++F+K F+LSH+ T SVFF GY
Sbjct: 123 AKESERALLNVHVDNKKVVLGVLTYGKCDQFSLDIMFSKPFKLSHSCTTGSVFFIGY 293
Score = 62.0 bits (129), Expect(2) = 5e-023
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / +3
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGE 1085
MEFWG+EVKPG C+PG G LH+SQAALGE
Sbjct: 15 MEFWGVEVKPGEVQSCDPGDGKYLHLSQAALGE 113
>gb|BQ702164.1|BQ702164 NXSI_125_F08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_125_F08 5' similar to Arabidopsis thaliana
sequence At3g44750 histone deacetylase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 395
Score = 66.6 bits (139), Expect(2) = 5e-023
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = -1 / +3
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+S+ AL+ V VD+KK+ +G L+ K Q D++F+K F+LSH+ T SVFF GY
Sbjct: 159 AKESERALLNVHVDNKKVVLGVLTYGKCDQFSLDIMFSKPFKLSHSCTTGSVFFIGY 329
Score = 62.0 bits (129), Expect(2) = 5e-023
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / +3
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGE 1085
MEFWG+EVKPG C+PG G LH+SQAALGE
Sbjct: 51 MEFWGVEVKPGEVQSCDPGDGKYLHLSQAALGE 149
>gb|DR694249.1|DR694249 EST1084340 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEA01 3' end, mRNA sequence
Length = 689
Score = 64.8 bits (135), Expect(2) = 2e-022
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = -1 / +1
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+S AL+ V VD+KK+ +G L+ K Q D++F+K F+LSH+ T SVFF GY
Sbjct: 178 AKESARALLNVHVDNKKVVLGVLTYGKCDQFSLDIMFSKPFKLSHSCTTGSVFFIGY 348
Score = 62.0 bits (129), Expect(2) = 2e-022
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGE 1085
MEFWG+EVKPG C+PG G LH+SQAALGE
Sbjct: 70 MEFWGVEVKPGEVQSCDPGDGKYLHLSQAALGE 168
>gb|DR015958.1|DR015958 STRS1_6_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_6_F06_A034 5', mRNA sequence
Length = 729
Score = 76.2 bits (160), Expect(2) = 3e-022
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -1 / +1
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+++ +YV VD KK +GTLS K QI DLVF KEF+LSHTS+T SVF SGY
Sbjct: 106 AKENERVSLYVHVDGKKFVLGTLSRGKCDQIGLDLVFEKEFKLSHTSQTGSVFVSGY 276
Score = 50.1 bits (103), Expect(2) = 3e-022
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -1 / +1
Query: 1180 EFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
EFWG+EVKPG + +PG LH+SQAA+G+ +
Sbjct: 1 EFWGVEVKPGEALTFDPGDERYLHMSQAAIGDKE 102
>gb|CF475551.1|CF475551 RTWW2_12_H02.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_12_H02_A021 5', mRNA sequence
Length = 463
Score = 66.6 bits (139), Expect(2) = 4e-022
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = -1 / +3
Query: 1084 SKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGY 914
+K+S+ AL+ V VD+KK+ +G L+ K Q D++F+K F+LSH+ T SVFF GY
Sbjct: 108 AKESERALLNVHVDNKKVVLGVLTYGKCDQFSLDIMFSKPFKLSHSCTTGSVFFIGY 278
Score = 59.3 bits (123), Expect(2) = 4e-022
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = -1 / +3
Query: 1180 EFWGLEVKPGSTVKCEPGHGFILHVSQAALGE 1085
EFWG+EVKPG C+PG G LH+SQAALGE
Sbjct: 3 EFWGVEVKPGEVHSCDPGDGKYLHLSQAALGE 98
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 671,965,968
Number of Sequences: 355925
Number of extensions: 10814653
Number of successful extensions: 60378
Number of sequences better than 1.0e-020: 21
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 20058584715
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)