TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064G21F020918.3.1
(705 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB644534.1|CB644534 OSJNEb05M17.f OSJNEb Oryza sativa (j... 148 7e-034
dbj|AK066563.1| Oryza sativa (japonica cultivar-group) cDNA... 148 8e-034
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 76 1e-025
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 76 2e-025
gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbar... 76 2e-025
gb|AACV01006176.1| Oryza sativa (japonica cultivar-group) c... 76 2e-025
>gb|CB644534.1|CB644534 OSJNEb05M17.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05M17 5', mRNA sequence
Length = 805
Score = 148 bits (317), Expect(2) = 7e-034
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = +3 / +1
Query: 453 DVATRSKSQKSSAIQNEPSTPANPPTAYPDWSQFQAYYNAAGTAPVTPPAFFHSSVAPTH 632
+VATRSKSQKSSA QNE STP NPPTAYPDWSQFQAYYN AGTAP+TPP FFH +VAP+
Sbjct: 466 EVATRSKSQKSSATQNEQSTPTNPPTAYPDWSQFQAYYNPAGTAPMTPPGFFHPNVAPSP 645
Query: 633 QGHPYMW 653
QGHPYMW
Sbjct: 646 QGHPYMW 666
Score = 142 bits (305), Expect = 4e-032
Identities = 56/91 (61%), Positives = 66/91 (72%)
Frame = -2 / -2
Query: 704 HCCIWWWCPIRRHHLWTPHIRVPLMGWSYR*MKKSRWGYWSCPSSIIVCLELRPIRICCG 525
H IW C I RHHLWTPHI VPL WS+ M+K+RWG+WSCPS IIVCL+LRP+RIC
Sbjct: 717 HRRIWRRCSIGRHHLWTPHIWVPLRTWSHIWMEKARWGHWSCPSRIIVCLKLRPVRICSR 538
Query: 524 GVSRCTRLILYC*RFLRFGPSSHITLSHCLF 432
+S CT IL FLRFGPS +++ SH LF
Sbjct: 537 RISGCTLFILCRR*FLRFGPSGYLSFSHALF 445
Score = 132 bits (282), Expect = 5e-029
Identities = 56/91 (61%), Positives = 67/91 (73%)
Frame = +1 / +2
Query: 433 NKQWERVMWLLGPNLKNRQQYRMSRVHLLTPPQHILIGLSSRHTIMLLGQLQ*PHRLFFI 612
NK WE+ LGPNLKN +++RM+RVH L HI GL+ RHTI+LLGQLQ*PHR F I
Sbjct: 446 NKAWEKER*PLGPNLKNHRRHRMNRVHPLILLLHIRTGLNFRHTIILLGQLQ*PHRAFSI 625
Query: 613 HL*LQPIRGTRICGVHR*CLLMGHHHHMQQC 705
+ LQ +RGT ICGVHR*CL M H HM++C
Sbjct: 626 QMWLQVLRGTHICGVHR*CLPMEHRRHMRRC 718
Score = 125 bits (268), Expect = 5e-027
Identities = 55/90 (61%), Positives = 66/90 (73%)
Frame = +2 / +3
Query: 434 INNGKG*CGY*VQISKIVSNTE*AEYTC*PPHSIS*LVSVPGIL*CCWDSSSNPTGFFSF 613
I +GK +*VQISKI+ +TE* EYT * + IS LVS+ GIL* CWDSS++PTG F
Sbjct: 447 IKHGKRRGSH*VQISKIIGDTE*TEYTH*SSYCISGLVSISGIL*SCWDSSNDPTGLFPS 626
Query: 614 ICSSNPSGAPVYVGSTDDASLWDTTTICNN 703
C S SGAP+YVGSTDDASLW+T IC +
Sbjct: 627 KCGSKSSGAPIYVGSTDDASLWNTAAICGD 716
Score = 112 bits (240), Expect = 3e-023
Identities = 54/88 (61%), Positives = 59/88 (67%)
Frame = -1 / -1
Query: 696 HMVVVSHKEASSVDPTYTGAPDGLELQMNEKKPVGLLELSQQHYSMPGTETNQDMLWGG* 517
HM V H+EASSVDPTY GAP+ LE ++ K PVG LELSQQ YSMP ET+ DM *
Sbjct: 709 HMAAVFHREASSVDPTYMGAPEDLEPHLDGKSPVGSLELSQQDYSMPEIETSPDMQ*ED* 530
Query: 516 QVYSAHSVLLTIFEIWT**PHHPFPLFI 433
VYS HSV IFEIWT* FP FI
Sbjct: 529 WVYSVHSVSPMIFEIWT*WLPLLFPCFI 446
Score = 22.1 bits (42), Expect(2) = 7e-034
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +3 / +2
Query: 48 STACAPGIPKSCGASAPTPLVDSSLPNTPEESFSATRLPPL 170
+T+CA G + A P + SF ++ LPP+
Sbjct: 20 ATSCARGRRRRLRAQEGVPRASDASVLPSPSSFLSSLLPPI 142
>dbj|AK066563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071G08, full
insert sequence
Length = 2060
Score = 148 bits (317), Expect = 8e-034
Identities = 56/67 (83%), Positives = 60/67 (89%)
Frame = +3 / +2
Query: 453 DVATRSKSQKSSAIQNEPSTPANPPTAYPDWSQFQAYYNAAGTAPVTPPAFFHSSVAPTH 632
+VATRSKSQKSSA QNE STP NPPTAYPDWSQFQAYYN AGTAP+TPP FFH +VAP+
Sbjct: 497 EVATRSKSQKSSATQNEQSTPTNPPTAYPDWSQFQAYYNPAGTAPMTPPGFFHPNVAPSP 676
Query: 633 QGHPYMW 653
QGHPYMW
Sbjct: 677 QGHPYMW 697
Score = 142 bits (305), Expect = 4e-032
Identities = 56/91 (61%), Positives = 66/91 (72%)
Frame = -2 / -2
Query: 704 HCCIWWWCPIRRHHLWTPHIRVPLMGWSYR*MKKSRWGYWSCPSSIIVCLELRPIRICCG 525
H IW C I RHHLWTPHI VPL WS+ M+K+RWG+WSCPS IIVCL+LRP+RIC
Sbjct: 748 HRRIWRRCSIGRHHLWTPHIWVPLRTWSHIWMEKARWGHWSCPSRIIVCLKLRPVRICSR 569
Query: 524 GVSRCTRLILYC*RFLRFGPSSHITLSHCLF 432
+S CT IL FLRFGPS +++ SH LF
Sbjct: 568 RISGCTLFILCRR*FLRFGPSGYLSFSHALF 476
Score = 132 bits (282), Expect = 5e-029
Identities = 56/91 (61%), Positives = 67/91 (73%)
Frame = +1 / +3
Query: 433 NKQWERVMWLLGPNLKNRQQYRMSRVHLLTPPQHILIGLSSRHTIMLLGQLQ*PHRLFFI 612
NK WE+ LGPNLKN +++RM+RVH L HI GL+ RHTI+LLGQLQ*PHR F I
Sbjct: 477 NKAWEKER*PLGPNLKNHRRHRMNRVHPLILLLHIRTGLNFRHTIILLGQLQ*PHRAFSI 656
Query: 613 HL*LQPIRGTRICGVHR*CLLMGHHHHMQQC 705
+ LQ +RGT ICGVHR*CL M H HM++C
Sbjct: 657 QMWLQVLRGTHICGVHR*CLPMEHRRHMRRC 749
Score = 125 bits (268), Expect = 5e-027
Identities = 55/90 (61%), Positives = 66/90 (73%)
Frame = +2 / +1
Query: 434 INNGKG*CGY*VQISKIVSNTE*AEYTC*PPHSIS*LVSVPGIL*CCWDSSSNPTGFFSF 613
I +GK +*VQISKI+ +TE* EYT * + IS LVS+ GIL* CWDSS++PTG F
Sbjct: 478 IKHGKRRGSH*VQISKIIGDTE*TEYTH*SSYCISGLVSISGIL*SCWDSSNDPTGLFPS 657
Query: 614 ICSSNPSGAPVYVGSTDDASLWDTTTICNN 703
C S SGAP+YVGSTDDASLW+T IC +
Sbjct: 658 KCGSKSSGAPIYVGSTDDASLWNTAAICGD 747
Score = 112 bits (240), Expect = 3e-023
Identities = 54/88 (61%), Positives = 59/88 (67%)
Frame = -1 / -1
Query: 696 HMVVVSHKEASSVDPTYTGAPDGLELQMNEKKPVGLLELSQQHYSMPGTETNQDMLWGG* 517
HM V H+EASSVDPTY GAP+ LE ++ K PVG LELSQQ YSMP ET+ DM *
Sbjct: 740 HMAAVFHREASSVDPTYMGAPEDLEPHLDGKSPVGSLELSQQDYSMPEIETSPDMQ*ED* 561
Query: 516 QVYSAHSVLLTIFEIWT**PHHPFPLFI 433
VYS HSV IFEIWT* FP FI
Sbjct: 560 WVYSVHSVSPMIFEIWT*WLPLLFPCFI 477
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 75.8 bits (159), Expect(3) = 4e-025
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = -2 / +3
Query: 665 HLWTPHIRVPLMGWSYR*MKKSRWGYWSCPSSIIVCLEL 549
+LWTPHI VPL WS+ M+K+RWG+WSCPS IIVCL++
Sbjct: 7363863 YLWTPHIWVPLRTWSHIWMEKARWGHWSCPSRIIVCLQI 7363979
Score = 72.5 bits (152), Expect(3) = 1e-025
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +3 / -2
Query: 558 AYYNAAGTAPVTPPAFFHSSVAPTHQGHPYMW 653
AYYN AGTAP+TPP FFH +VAP+ QGHPYMW
Sbjct: 7363970 AYYNPAGTAPMTPPGFFHPNVAPSPQGHPYMW 7363875
Score = 52.4 bits (108), Expect(3) = 1e-025
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +3 / -2
Query: 498 NEPSTPANPPTAYPDWSQFQAY 563
NE STP NPPTAYPDWSQFQ +
Sbjct: 7364111 NEQSTPTNPPTAYPDWSQFQVH 7364046
Score = 49.2 bits (101), Expect(3) = 4e-025
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = -3 / +2
Query: 496 CIADDF*DLDLVATSPFPIVY 434
C+ADDF*DLDLVATSPFP++Y
Sbjct: 7364189 CVADDF*DLDLVATSPFPMLY 7364251
Score = 32.7 bits (65), Expect(3) = 1e-025
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1 / -2
Query: 433 NKQWERVMWLLGPNLKNRQQYR 498
NK WE+ LGPNLKN +++R
Sbjct: 7364252 NKAWEKER*PLGPNLKNHRRHR 7364187
Score = 31.3 bits (62), Expect(3) = 4e-025
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2 / +3
Query: 557 LELRPIRICCGGVSRCTRLIL 495
L+LRP+RIC +S CT IL
Sbjct: 7364052 LKLRPVRICSRRISGCTLFIL 7364114
>ref|NT_107190.1| Oryza sativa (japonica cultivar-group)
Length = 840383
Score = 75.8 bits (159), Expect(3) = 4e-025
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = -2 / +2
Query: 665 HLWTPHIRVPLMGWSYR*MKKSRWGYWSCPSSIIVCLEL 549
+LWTPHI VPL WS+ M+K+RWG+WSCPS IIVCL++
Sbjct: 589046 YLWTPHIWVPLRTWSHIWMEKARWGHWSCPSRIIVCLQI 589162
Score = 72.5 bits (152), Expect(3) = 2e-025
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +3 / -2
Query: 558 AYYNAAGTAPVTPPAFFHSSVAPTHQGHPYMW 653
AYYN AGTAP+TPP FFH +VAP+ QGHPYMW
Sbjct: 589153 AYYNPAGTAPMTPPGFFHPNVAPSPQGHPYMW 589058
Score = 52.4 bits (108), Expect(3) = 2e-025
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +3 / -2
Query: 498 NEPSTPANPPTAYPDWSQFQAY 563
NE STP NPPTAYPDWSQFQ +
Sbjct: 589294 NEQSTPTNPPTAYPDWSQFQVH 589229
Score = 49.2 bits (101), Expect(3) = 4e-025
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = -3 / +1
Query: 496 CIADDF*DLDLVATSPFPIVY 434
C+ADDF*DLDLVATSPFP++Y
Sbjct: 589372 CVADDF*DLDLVATSPFPMLY 589434
Score = 32.7 bits (65), Expect(3) = 2e-025
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1 / -2
Query: 433 NKQWERVMWLLGPNLKNRQQYR 498
NK WE+ LGPNLKN +++R
Sbjct: 589435 NKAWEKER*PLGPNLKNHRRHR 589370
Score = 31.3 bits (62), Expect(3) = 4e-025
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2 / +2
Query: 557 LELRPIRICCGGVSRCTRLIL 495
L+LRP+RIC +S CT IL
Sbjct: 589235 LKLRPVRICSRRISGCTLFIL 589297
>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0060E18, from chromosome 3, complete sequence
Length = 147983
Score = 75.8 bits (159), Expect(3) = 4e-025
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = -2 / +3
Query: 665 HLWTPHIRVPLMGWSYR*MKKSRWGYWSCPSSIIVCLEL 549
+LWTPHI VPL WS+ M+K+RWG+WSCPS IIVCL++
Sbjct: 84012 YLWTPHIWVPLRTWSHIWMEKARWGHWSCPSRIIVCLQI 84128
Score = 72.5 bits (152), Expect(3) = 2e-025
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +3 / -1
Query: 558 AYYNAAGTAPVTPPAFFHSSVAPTHQGHPYMW 653
AYYN AGTAP+TPP FFH +VAP+ QGHPYMW
Sbjct: 84119 AYYNPAGTAPMTPPGFFHPNVAPSPQGHPYMW 84024
Score = 52.4 bits (108), Expect(3) = 2e-025
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +3 / -1
Query: 498 NEPSTPANPPTAYPDWSQFQAY 563
NE STP NPPTAYPDWSQFQ +
Sbjct: 84260 NEQSTPTNPPTAYPDWSQFQVH 84195
Score = 49.2 bits (101), Expect(3) = 4e-025
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = -3 / +2
Query: 496 CIADDF*DLDLVATSPFPIVY 434
C+ADDF*DLDLVATSPFP++Y
Sbjct: 84338 CVADDF*DLDLVATSPFPMLY 84400
Score = 32.7 bits (65), Expect(3) = 2e-025
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1 / -1
Query: 433 NKQWERVMWLLGPNLKNRQQYR 498
NK WE+ LGPNLKN +++R
Sbjct: 84401 NKAWEKER*PLGPNLKNHRRHR 84336
Score = 31.3 bits (62), Expect(3) = 4e-025
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2 / +3
Query: 557 LELRPIRICCGGVSRCTRLIL 495
L+LRP+RIC +S CT IL
Sbjct: 84201 LKLRPVRICSRRISGCTLFIL 84263
>gb|AACV01006176.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006176, whole
genome shotgun sequence
Length = 36507
Score = 75.8 bits (159), Expect(3) = 4e-025
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = -2 / +1
Query: 665 HLWTPHIRVPLMGWSYR*MKKSRWGYWSCPSSIIVCLEL 549
+LWTPHI VPL WS+ M+K+RWG+WSCPS IIVCL++
Sbjct: 27133 YLWTPHIWVPLRTWSHIWMEKARWGHWSCPSRIIVCLQI 27249
Score = 72.5 bits (152), Expect(3) = 2e-025
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +3 / -1
Query: 558 AYYNAAGTAPVTPPAFFHSSVAPTHQGHPYMW 653
AYYN AGTAP+TPP FFH +VAP+ QGHPYMW
Sbjct: 27240 AYYNPAGTAPMTPPGFFHPNVAPSPQGHPYMW 27145
Score = 52.4 bits (108), Expect(3) = 2e-025
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +3 / -1
Query: 498 NEPSTPANPPTAYPDWSQFQAY 563
NE STP NPPTAYPDWSQFQ +
Sbjct: 27381 NEQSTPTNPPTAYPDWSQFQVH 27316
Score = 49.2 bits (101), Expect(3) = 4e-025
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = -3 / +3
Query: 496 CIADDF*DLDLVATSPFPIVY 434
C+ADDF*DLDLVATSPFP++Y
Sbjct: 27459 CVADDF*DLDLVATSPFPMLY 27521
Score = 32.7 bits (65), Expect(3) = 2e-025
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1 / -1
Query: 433 NKQWERVMWLLGPNLKNRQQYR 498
NK WE+ LGPNLKN +++R
Sbjct: 27522 NKAWEKER*PLGPNLKNHRRHR 27457
Score = 31.3 bits (62), Expect(3) = 4e-025
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2 / +1
Query: 557 LELRPIRICCGGVSRCTRLIL 495
L+LRP+RIC +S CT IL
Sbjct: 27322 LKLRPVRICSRRISGCTLFIL 27384
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,096,581,387
Number of Sequences: 438736
Number of extensions: 88427945
Number of successful extensions: 706451
Number of sequences better than 1.0e-020: 7
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 158827879175
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)