TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.4
(664 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 100 1e-040
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 100 1e-040
gb|AC135599.3| Oryza sativa (japonica cultivar-group) chrom... 100 1e-040
gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) c... 100 1e-040
ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA 99 1e-037
gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) c... 99 2e-033
gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloar... 92 2e-032
ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-032
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 99 7e-032
gb|CF329662.1|CF329662 NACL--05-B03.b1 Rice callus plasmid ... 92 6e-031
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 99 4e-030
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 95 8e-030
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 95 8e-030
dbj|AP003943.3| Oryza sativa (japonica cultivar-group) geno... 95 9e-030
gb|AACV01015390.1| Oryza sativa (japonica cultivar-group) c... 95 9e-030
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 99 8e-029
dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA... 92 3e-028
dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA... 76 9e-028
gb|CZ555321.1|CZ555321 M0027188 AS_TRIM_TDNA_B1 Oryza sativ... 59 2e-025
gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (j... 66 5e-024
gb|AU032204.1|AU032204 AU032204 Rice root Oryza sativa (jap... 63 6e-023
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 100 bits (214), Expect(4) = 1e-040
Identities = 37/53 (69%), Positives = 47/53 (88%)
Frame = -2 / -3
Query: 159 QQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q GVYSE++RVLKPG+ FA+DEWCLTD +DP+NA+HL+ K E+ LG+GLPDIR
Sbjct: 1963448 QVGVYSEIFRVLKPGKLFAMDEWCLTDKYDPDNARHLSIKGEL*LGNGLPDIR 1963290
Score = 68.0 bits (142), Expect(4) = 1e-040
Identities = 24/37 (64%), Positives = 33/37 (89%)
Frame = -2 / -2
Query: 339 SLKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
+++GDFMNMPI D TFDAAYA+ ATC+AP+AVC+ ++
Sbjct: 1963650 AMQGDFMNMPIPDCTFDAAYALDATCHAPDAVCIVAH 1963540
Score = 31.8 bits (63), Expect(4) = 1e-040
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 513 SSTXXXGLXXNDYHVSRGKVCILXFFL 433
SS GL NDY +SRG+V FF+
Sbjct: 1963963 SSASVTGLNNNDYQISRGQVMSSCFFV 1963883
Score = 25.8 bits (50), Expect(4) = 1e-040
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2 / -3
Query: 396 FNFWLQEHIFSAGLSEQCCSLKGD 325
F+ QE FS GLSE C +K D
Sbjct: 1963784 FDLQFQELNFSVGLSETCNYVKVD 1963713
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 100 bits (214), Expect(4) = 1e-040
Identities = 37/53 (69%), Positives = 47/53 (88%)
Frame = -2 / -1
Query: 159 QQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q GVYSE++RVLKPG+ FA+DEWCLTD +DP+NA+HL+ K E+ LG+GLPDIR
Sbjct: 7294 QVGVYSEIFRVLKPGKLFAMDEWCLTDKYDPDNARHLSIKGEL*LGNGLPDIR 7136
Score = 68.0 bits (142), Expect(4) = 1e-040
Identities = 24/37 (64%), Positives = 33/37 (89%)
Frame = -2 / -3
Query: 339 SLKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
+++GDFMNMPI D TFDAAYA+ ATC+AP+AVC+ ++
Sbjct: 7496 AMQGDFMNMPIPDCTFDAAYALDATCHAPDAVCIVAH 7386
Score = 31.8 bits (63), Expect(4) = 1e-040
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -2
Query: 513 SSTXXXGLXXNDYHVSRGKVCILXFFL 433
SS GL NDY +SRG+V FF+
Sbjct: 7809 SSASVTGLNNNDYQISRGQVMSSCFFV 7729
Score = 25.8 bits (50), Expect(4) = 1e-040
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2 / -1
Query: 396 FNFWLQEHIFSAGLSEQCCSLKGD 325
F+ QE FS GLSE C +K D
Sbjct: 7630 FDLQFQELNFSVGLSETCNYVKVD 7559
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0045P14, complete sequence
Length = 121894
Score = 100 bits (214), Expect(4) = 1e-040
Identities = 37/53 (69%), Positives = 47/53 (88%)
Frame = -2 / -1
Query: 159 QQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q GVYSE++RVLKPG+ FA+DEWCLTD +DP+NA+HL+ K E+ LG+GLPDIR
Sbjct: 7294 QVGVYSEIFRVLKPGKLFAMDEWCLTDKYDPDNARHLSIKGEL*LGNGLPDIR 7136
Score = 68.0 bits (142), Expect(4) = 1e-040
Identities = 24/37 (64%), Positives = 33/37 (89%)
Frame = -2 / -3
Query: 339 SLKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
+++GDFMNMPI D TFDAAYA+ ATC+AP+AVC+ ++
Sbjct: 7496 AMQGDFMNMPIPDCTFDAAYALDATCHAPDAVCIVAH 7386
Score = 31.8 bits (63), Expect(4) = 1e-040
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -2
Query: 513 SSTXXXGLXXNDYHVSRGKVCILXFFL 433
SS GL NDY +SRG+V FF+
Sbjct: 7809 SSASVTGLNNNDYQISRGQVMSSCFFV 7729
Score = 25.8 bits (50), Expect(4) = 1e-040
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2 / -1
Query: 396 FNFWLQEHIFSAGLSEQCCSLKGD 325
F+ QE FS GLSE C +K D
Sbjct: 7630 FDLQFQELNFSVGLSETCNYVKVD 7559
>gb|AACV01022880.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022880, whole
genome shotgun sequence
Length = 10770
Score = 100 bits (214), Expect(4) = 1e-040
Identities = 37/53 (69%), Positives = 47/53 (88%)
Frame = -2 / +1
Query: 159 QQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q GVYSE++RVLKPG+ FA+DEWCLTD +DP+NA+HL+ K E+ LG+GLPDIR
Sbjct: 2971 QVGVYSEIFRVLKPGKLFAMDEWCLTDKYDPDNARHLSIKGEL*LGNGLPDIR 3129
Score = 68.0 bits (142), Expect(4) = 1e-040
Identities = 24/37 (64%), Positives = 33/37 (89%)
Frame = -2 / +3
Query: 339 SLKGDFMNMPIADNTFDAAYAIQATCYAPEAVCLPSY 229
+++GDFMNMPI D TFDAAYA+ ATC+AP+AVC+ ++
Sbjct: 2769 AMQGDFMNMPIPDCTFDAAYALDATCHAPDAVCIVAH 2879
Score = 31.8 bits (63), Expect(4) = 1e-040
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / +2
Query: 513 SSTXXXGLXXNDYHVSRGKVCILXFFL 433
SS GL NDY +SRG+V FF+
Sbjct: 2456 SSASVTGLNNNDYQISRGQVMSSCFFV 2536
Score = 25.8 bits (50), Expect(4) = 1e-040
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2 / +1
Query: 396 FNFWLQEHIFSAGLSEQCCSLKGD 325
F+ QE FS GLSE C +K D
Sbjct: 2635 FDLQFQELNFSVGLSETCNYVKVD 2706
>ref|XM_470035.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 993
Score = 99.1 bits (210), Expect(3) = 1e-037
Identities = 37/51 (72%), Positives = 44/51 (86%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
GVY E+ RVLKPGQ FALDEWC+TD +DP N++H + KAEIELG+GLPDIR
Sbjct: 502 GVYREICRVLKPGQLFALDEWCMTDKYDPGNSRHRSIKAEIELGNGLPDIR 654
Score = 81.3 bits (171), Expect(3) = 2e-023
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = +2 / -2
Query: 5 MSGRPSPSSISALVVKCLALLGSNRSVRHHSSSAKYCPGFSTR*TSL*TP 154
MSGRP PSSISAL+++CL L GS SV HHSS+A CPGFSTR SL*TP
Sbjct: 650 MSGRPLPSSISALMLRCLELPGSYLSVMHHSSNANNCPGFSTRQISL*TP 501
Score = 77.6 bits (163), Expect(3) = 1e-037
Identities = 31/42 (73%), Positives = 35/42 (83%)
Frame = -2 / +1
Query: 369 FSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
FS GLSE C +K DFMNMPI D TFDAAYAI+ATC+AP+AV
Sbjct: 376 FSVGLSETCNFVKADFMNMPIPDATFDAAYAIEATCHAPDAV 501
Score = 43.2 bits (88), Expect(3) = 2e-023
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +2 / -2
Query: 245 TASGXXXXXXXXXXXSKVLSAIGIFMKSPFKEQHCSLKPAEKMCS 379
TASG SKV S IG+FMKS + SLKP EK+ S
Sbjct: 500 TASGAWHVASMA*AASKVASGIGMFMKSALTKLQVSLKPTEKLSS 366
Score = 25.8 bits (50), Expect(3) = 2e-023
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3 / -3
Query: 456 PCPLRHGSHXXSIQXLXLS 512
PCPL G+H S+Q LS
Sbjct: 367 PCPLISGTHCCSVQSPMLS 311
Score = 22.1 bits (42), Expect(3) = 1e-037
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3 / +2
Query: 512 AQXQXLD*XXMTTMSQGAR 456
AQ + LD* M T QGAR
Sbjct: 311 AQHR*LD*TTMRTRYQGAR 367
>gb|AACV01008131.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008131, whole
genome shotgun sequence
Length = 26815
Score = 99.1 bits (210), Expect(3) = 2e-033
Identities = 37/51 (72%), Positives = 44/51 (86%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
GVY E+ RVLKPGQ FALDEWC+TD +DP N++H + KAEIELG+GLPDIR
Sbjct: 8086 GVYREICRVLKPGQLFALDEWCMTDKYDPGNSRHRSIKAEIELGNGLPDIR 8238
Score = 67.5 bits (141), Expect(3) = 2e-033
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -2 / +3
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCL 238
++ DFMNMPI D TFDAAYAI+ATC+AP+AVCL
Sbjct: 7662 MQADFMNMPIPDATFDAAYAIEATCHAPDAVCL 7760
Score = 30.9 bits (61), Expect(3) = 2e-033
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGKVCILXFFL 433
SS GL N Y +SRGKV F+L
Sbjct: 7330 SSASVTGLNNNAYQISRGKVTSSAFYL 7410
>gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloartenol-C24-methyltransferase
mRNA, complete cds
Length = 1629
Score = 92.3 bits (195), Expect(3) = 2e-032
Identities = 35/51 (68%), Positives = 41/51 (80%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA+ EWC+TD ++PNNA H K EIELG+GLPDIR
Sbjct: 733 GCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIR 885
Score = 66.1 bits (138), Expect(3) = 2e-032
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
AG+S C +K DFM MP +DNTFDA YAI+ATC+AP+ V
Sbjct: 613 AGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPV 732
Score = 23.1 bits (44), Expect(3) = 2e-032
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S GL N+Y ++RGK
Sbjct: 541 SLASVTGLNNNEYQITRGK 597
>ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1525
Score = 92.3 bits (195), Expect(3) = 2e-032
Identities = 35/51 (68%), Positives = 41/51 (80%)
Frame = -2 / +2
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA+ EWC+TD ++PNNA H K EIELG+GLPDIR
Sbjct: 659 GCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIR 811
Score = 66.1 bits (138), Expect(3) = 2e-032
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = -2 / +2
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
AG+S C +K DFM MP +DNTFDA YAI+ATC+AP+ V
Sbjct: 539 AGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPV 658
Score = 23.1 bits (44), Expect(3) = 2e-032
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2 / +2
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S GL N+Y ++RGK
Sbjct: 467 SLASVTGLNNNEYQITRGK 523
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
sequence
Length = 154555
Score = 99.1 bits (210), Expect(3) = 7e-032
Identities = 37/51 (72%), Positives = 44/51 (86%)
Frame = -2 / +2
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
GVY E+ RVLKPGQ FALDEWC+TD +DP N++H + KAEIELG+GLPDIR
Sbjct: 44450 GVYREICRVLKPGQLFALDEWCMTDKYDPGNSRHRSIKAEIELGNGLPDIR 44602
Score = 67.5 bits (141), Expect(3) = 7e-032
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -2 / +1
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCL 238
++ DFMNMPI D TFDAAYAI+ATC+AP+AVCL
Sbjct: 44026 MQADFMNMPIPDATFDAAYAIEATCHAPDAVCL 44124
Score = 30.9 bits (61), Expect(3) = 7e-032
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2 / +2
Query: 513 SSTXXXGLXXNDYHVSRGKVCILXFFL 433
SS GL N Y +SRGKV F+L
Sbjct: 43694 SSASVTGLNNNAYQISRGKVTSSAFYL 43774
>gb|CF329662.1|CF329662 NACL--05-B03.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--05-B03, mRNA sequence
Length = 560
Score = 92.3 bits (195), Expect(2) = 6e-031
Identities = 35/51 (68%), Positives = 41/51 (80%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA+ EWC+TD ++PNNA H K EIELG+GLPDIR
Sbjct: 175 GCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIR 327
Score = 66.1 bits (138), Expect(2) = 6e-031
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
AG+S C +K DFM MP +DNTFDA YAI+ATC+AP+ V
Sbjct: 55 AGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPV 174
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 99.1 bits (210), Expect(3) = 4e-030
Identities = 37/51 (72%), Positives = 44/51 (86%)
Frame = -2 / -1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
GVY E+ RVLKPGQ FALDEWC+TD +DP N++H + KAEIELG+GLPDIR
Sbjct: 110106 GVYREICRVLKPGQLFALDEWCMTDKYDPGNSRHRSIKAEIELGNGLPDIR 109954
Score = 67.5 bits (141), Expect(3) = 4e-030
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -2 / -3
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCL 238
++ DFMNMPI D TFDAAYAI+ATC+AP+AVCL
Sbjct: 110530 MQADFMNMPIPDATFDAAYAIEATCHAPDAVCL 110432
Score = 30.9 bits (61), Expect(3) = 4e-030
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2 / -1
Query: 513 SSTXXXGLXXNDYHVSRGKVCILXFFL 433
SS GL N Y +SRGKV F+L
Sbjct: 110862 SSASVTGLNNNAYQISRGKVTSSAFYL 110782
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 95.0 bits (201), Expect(2) = 8e-030
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = -2 / -2
Query: 168 WLSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
++S+ G Y E+YRVLKPGQ FA+ EWC+TD ++PNNA H K EIELG+GLPDIR
Sbjct: 5741174 FMSKVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIR 5741007
Score = 59.3 bits (123), Expect(2) = 8e-030
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = -2 / -1
Query: 339 SLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
S++ DFM MP +DNTFDA YAI+ATC+AP+ V
Sbjct: 5741349 SIQADFMKMPFSDNTFDAVYAIEATCHAPDPV 5741254
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 95.0 bits (201), Expect(2) = 8e-030
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = -2 / -2
Query: 168 WLSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
++S+ G Y E+YRVLKPGQ FA+ EWC+TD ++PNNA H K EIELG+GLPDIR
Sbjct: 2875953 FMSKVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIR 2875786
Score = 59.3 bits (123), Expect(2) = 8e-030
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = -2 / -1
Query: 339 SLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
S++ DFM MP +DNTFDA YAI+ATC+AP+ V
Sbjct: 2876128 SIQADFMKMPFSDNTFDAVYAIEATCHAPDPV 2876033
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1119_B04
Length = 151721
Score = 95.0 bits (201), Expect(2) = 9e-030
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = -2 / -3
Query: 168 WLSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
++S+ G Y E+YRVLKPGQ FA+ EWC+TD ++PNNA H K EIELG+GLPDIR
Sbjct: 92130 FMSKVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIR 91963
Score = 59.3 bits (123), Expect(2) = 9e-030
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = -2 / -2
Query: 339 SLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
S++ DFM MP +DNTFDA YAI+ATC+AP+ V
Sbjct: 92305 SIQADFMKMPFSDNTFDAVYAIEATCHAPDPV 92210
>gb|AACV01015390.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015390, whole
genome shotgun sequence
Length = 10237
Score = 95.0 bits (201), Expect(2) = 9e-030
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = -2 / -3
Query: 168 WLSQQGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
++S+ G Y E+YRVLKPGQ FA+ EWC+TD ++PNNA H K EIELG+GLPDIR
Sbjct: 6854 FMSKVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIR 6687
Score = 59.3 bits (123), Expect(2) = 9e-030
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = -2 / -2
Query: 339 SLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
S++ DFM MP +DNTFDA YAI+ATC+AP+ V
Sbjct: 7029 SIQADFMKMPFSDNTFDAVYAIEATCHAPDPV 6934
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 99.1 bits (210), Expect(2) = 8e-029
Identities = 37/51 (72%), Positives = 44/51 (86%)
Frame = -2 / -3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
GVY E+ RVLKPGQ FALDEWC+TD +DP N++H + KAEIELG+GLPDIR
Sbjct: 7169584 GVYREICRVLKPGQLFALDEWCMTDKYDPGNSRHRSIKAEIELGNGLPDIR 7169432
Score = 67.5 bits (141), Expect(2) = 8e-029
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -2 / -2
Query: 336 LKGDFMNMPIADNTFDAAYAIQATCYAPEAVCL 238
++ DFMNMPI D TFDAAYAI+ATC+AP+AVCL
Sbjct: 7170008 MQADFMNMPIPDATFDAAYAIEATCHAPDAVCL 7169910
>dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L23, full
insert sequence
Length = 1526
Score = 92.3 bits (195), Expect(4) = 3e-028
Identities = 35/51 (68%), Positives = 41/51 (80%)
Frame = -2 / +3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA+ EWC+TD ++PNNA H K EIELG+GLPDIR
Sbjct: 660 GCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIR 812
Score = 46.9 bits (96), Expect(4) = 3e-028
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -2 / +2
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYA 277
AG+S C +K DFM MP +DNTFDA YA
Sbjct: 539 AGVSGTCDFVKADFMKMPFSDNTFDAVYA 625
Score = 23.1 bits (44), Expect(4) = 3e-028
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2 / +2
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S GL N+Y ++RGK
Sbjct: 467 SLASVTGLNNNEYQITRGK 523
Score = 22.1 bits (42), Expect(4) = 3e-028
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 276 IQATCYAPEAV 244
I+ATC+AP+ V
Sbjct: 627 IEATCHAPDPV 659
>dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D19, full
insert sequence
Length = 2883
Score = 76.2 bits (160), Expect(3) = 9e-028
Identities = 29/51 (56%), Positives = 37/51 (72%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+YRVLKPGQ FA+ EWC+TD ++PNNA ++ + L GLPDIR
Sbjct: 2116 GCYKEIYRVLKPGQCFAVYEWCITDHYEPNNAHTRGSRMKSSLARGLPDIR 2268
Score = 66.1 bits (138), Expect(3) = 9e-028
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = -2 / +1
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
AG+S C +K DFM MP +DNTFDA YAI+ATC+AP+ V
Sbjct: 1996 AGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPV 2115
Score = 23.1 bits (44), Expect(3) = 9e-028
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2 / +1
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S GL N+Y ++RGK
Sbjct: 1924 SLASVTGLNNNEYQITRGK 1980
>gb|CZ555321.1|CZ555321 M0027188 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0027188, DNA sequence
Length = 452
Score = 58.8 bits (122), Expect(3) = 2e-025
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = -2 / -1
Query: 339 SLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
SL+ DFM MP +DNTFDA YAI+ATC+AP+ V
Sbjct: 398 SLQVDFMKMPFSDNTFDAVYAIEATCHAPDPV 303
Score = 55.6 bits (115), Expect(3) = 2e-025
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -2 / -2
Query: 168 WLSQQGVYSEVYRVLKPGQYFALDEWCLTD 79
+LS+ G Y E+YRVLKPGQ FA+ EWC+TD
Sbjct: 223 FLSKVGCYKEIYRVLKPGQCFAVYEWCITD 134
Score = 42.8 bits (87), Expect(3) = 2e-025
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = -2 / -3
Query: 75 FDPNNAKHLTTKAEIELGDGLPDIR 1
++PNN H K EIELG+GLPDIR
Sbjct: 129 YEPNNVTHKRIKDEIELGNGLPDIR 55
>gb|CB671826.1|CB671826 OSJNEe05J06.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05J06 5', mRNA sequence
Length = 670
Score = 66.1 bits (138), Expect(3) = 5e-024
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = -2 / +2
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
AG+S C +K DFM MP +DNTFDA YAI+ATC+AP+ V
Sbjct: 452 AGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPV 571
Score = 63.4 bits (132), Expect(3) = 5e-024
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = -2 / +2
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNA 58
G Y E+YRVLKPGQ FA+ EWC+TD ++PNNA
Sbjct: 572 GCYKEIYRVLKPGQCFAVYEWCITDHYEPNNA 667
Score = 23.1 bits (44), Expect(3) = 5e-024
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2 / +2
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S GL N+Y ++RGK
Sbjct: 380 SLASVTGLNNNEYQITRGK 436
>gb|AU032204.1|AU032204 AU032204 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3690_1A, mRNA sequence
Length = 362
Score = 63.4 bits (132), Expect(3) = 6e-023
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = -2 / +3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKH 52
G Y E+YRVLKPGQ FA+ EWC+TD ++PN A H
Sbjct: 258 GCYKEIYRVLKPGQCFAVYEWCITDHYEPNXATH 359
Score = 62.5 bits (130), Expect(3) = 6e-023
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = -2 / +3
Query: 363 AGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
AG+S C +K DFM MP +DNTFDA Y I+ATC+ P+ V
Sbjct: 138 AGVSGTCDFVKADFMKMPFSDNTFDAVYXIEATCHXPDPV 257
Score = 23.1 bits (44), Expect(3) = 6e-023
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2 / +3
Query: 513 SSTXXXGLXXNDYHVSRGK 457
S GL N+Y ++RGK
Sbjct: 66 SLASVTGLNNNEYQITRGK 122
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,733,952,940
Number of Sequences: 438736
Number of extensions: 55949738
Number of successful extensions: 205298
Number of sequences better than 1.0e-020: 27
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 146121648841
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)