TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.2
(494 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA 221 4e-056
dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA... 161 2e-054
ref|XM_473290.1| Oryza sativa (japonica cultivar-group), p... 156 5e-053
dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA... 141 1e-043
ref|NM_197225.1| Oryza sativa (japonica cultivar-group) put... 141 1e-043
gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flow... 141 1e-043
gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) c... 88 1e-039
gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) c... 93 8e-039
dbj|AP004133.3| Oryza sativa (japonica cultivar-group) geno... 93 1e-038
dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chro... 93 2e-038
dbj|AP004768.3| Oryza sativa (japonica cultivar-group) geno... 93 4e-038
emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromoso... 88 3e-037
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 88 4e-037
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 93 8e-035
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 88 2e-034
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 88 3e-033
gb|AACV01021892.1| Oryza sativa (japonica cultivar-group) c... 80 6e-032
gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24... 80 1e-031
dbj|AK058507.1| Oryza sativa (japonica cultivar-group) cDNA... 95 2e-030
ref|NM_187463.1| Oryza sativa (japonica cultivar-group), p... 95 2e-030
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 80 1e-028
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-028
gb|CV723028.1|CV723028 root--02-E17.g1 Rice root lambda pha... 95 3e-028
gb|AU063991.1|AU063991 AU063991 Rice panicle at flowering s... 121 7e-026
gb|AU063889.1|AU063889 AU063889 Rice panicle at flowering s... 95 1e-025
gb|CF323532.1|CF323532 HDN--04-B15.g1 OsHDAC1-overexpressin... 95 2e-025
gb|CD670811.1|CD670811 OsMR230 5MT resistant rice mutant cD... 77 4e-025
gb|C71856.1|C71856 C71856 Rice panicle at flowering stage O... 88 4e-024
dbj|AK102383.1| Oryza sativa (japonica cultivar-group) cDNA... 82 4e-023
gb|C72613.1|C72613 C72613 Rice panicle at flowering stage O... 88 2e-022
gb|AU102059.1|AU102059 AU102059 Rice shoot Oryza sativa (ja... 102 4e-022
>ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 621
Score = 221 bits (477), Expect = 4e-056
Identities = 93/141 (65%), Positives = 96/141 (68%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
MSFTG QDKC CDKT HFIDLLT YHKTC HCKG SMC+YSSMD LYCKT
Sbjct: 1 MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKT 180
Query: 251 HFEQLFKXTGSFSKNFTPXXXSSDKXXLTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLT 430
HFEQLFK TGSFSK F+ SS+K RAPSKLSSAFSGT DK AACQKT YP LT
Sbjct: 181 HFEQLFKETGSFSKKFSQGGKSSEKSDQGRAPSKLSSAFSGTQDKCAACQKTVYPLEKLT 360
Query: 431 LXXXXYHKXXXKCSXXXXXLT 493
L YHK KCS LT
Sbjct: 361 LEGESYHKSCFKCSHGGCILT 423
Score = 120 bits (256), Expect(2) = 4e-037
Identities = 51/74 (68%), Positives = 53/74 (71%)
Frame = -3 / -2
Query: 294 FLEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRRSMKWXV 115
F EKLPV LKSCSK VLQY S+EE*LHIE PLQW L HVLW* VRRSMKW V
Sbjct: 224 FFEKLPVSLKSCSKCVLQYRTPSIEE*LHIERVPLQWLHLKHVLW*ETPSAVRRSMKWTV 45
Query: 114 LSXXVHLSCXPVKD 73
LS +HLSC PV D
Sbjct: 44 LSHALHLSCVPVND 3
Score = 72.5 bits (152), Expect(2) = 2e-021
Identities = 39/85 (45%), Positives = 47/85 (55%)
Frame = +1 / +3
Query: 238 VLQDPLRAALQXDRELLQELHAXXXVIRQGXTDKGPKQAVVCIFWYPX*VRSMPENXVPA 417
VLQD L AALQ D ELL+E+ A + R+ K QA+ I W *+ S+P+N VP
Sbjct: 168 VLQDAL*AALQRDGELLKEILARW*IFREERPGKSS*QAIFSILWNSR*MCSLPKNCVPI 347
Query: 418 XXXNSGXXXLPQEXXXVLAXXXXPD 492
NSG LPQE VLA PD
Sbjct: 348 GEANSGG*VLPQELLQVLAWGLHPD 422
Score = 58.3 bits (121), Expect(2) = 4e-037
Identities = 26/44 (59%), Positives = 26/44 (59%)
Frame = -3 / -2
Query: 492 VRXXXXCEHXXXLLW*XXXSRVXXXXGYXVFWHAAXLSXVPENA 361
VR CEH LLW* SRV GY VFW AA LS VPENA
Sbjct: 422 VRMQPPCEHLKQLLW*DSPSRVSFSNGYTVFWQAAHLS*VPENA 291
Score = 52.8 bits (109), Expect(2) = 2e-021
Identities = 22/38 (57%), Positives = 22/38 (57%)
Frame = +1 / +3
Query: 73 VFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXXP 186
V HR AGQV RQD P HRPPH LP DM Q P
Sbjct: 3 VVHRHAGQVQGVRQDRPFHRPPHRRRRLLPQDMLQVQP 116
>dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034M24, full
insert sequence
Length = 955
Score = 161 bits (347), Expect(2) = 2e-054
Identities = 66/98 (67%), Positives = 67/98 (68%)
Frame = +2 / +2
Query: 32 ACVRAATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMC 211
ACV TMSFTG QDKCT CDKT HFIDLLT YHKTC HCKG SMC
Sbjct: 26 ACVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMC 205
Query: 212 SYSSMDXXLYCKTHFEQLFKXTGSFSKNFTPXXXSSDK 325
SYSSMD LYCKTHFEQLFK TGSFSK F P S+DK
Sbjct: 206 SYSSMDGVLYCKTHFEQLFKETGSFSKKFAPGCRSTDK 319
Score = 129 bits (276), Expect(2) = 1e-040
Identities = 58/91 (63%), Positives = 60/91 (65%)
Frame = -3 / -2
Query: 303 GVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRRSMK 124
G FLEKLPV LKSCSKWVLQ SM+E*LHIE PLQW L VLW VRRSMK
Sbjct: 297 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHIERIPLQWLHLKQVLWYGTPSAVRRSMK 118
Query: 123 WXVLSXXVHLSCXPVKDMVPGXLSVAARTHA 31
W VLS VHLSC PVKDMV + THA
Sbjct: 117 WTVLSHAVHLSCVPVKDMVARDDCRRSTTHA 25
Score = 115 bits (246), Expect(2) = 3e-035
Identities = 53/107 (49%), Positives = 58/107 (54%)
Frame = +1 / +1
Query: 7 EAIGXXXXCVRSCSHRQASGHHVFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXXP 186
E CVR S S HHVFHR AGQVH RQD PLHRPPH +P D+ Q P
Sbjct: 1 EGTARGRACVRRRSSTVVSCHHVFHRHAGQVHGVRQDRPLHRPPHRRRRPVPQDLLQVQP 180
Query: 187 XXXXXXXXXXXXHGRXXVLQDPLRAALQXDRELLQELHAXXXVIRQG 327
HGR +LQDPL AALQ D ELLQE+ A + RQG
Sbjct: 181 LQRDSLDVQLLVHGRRPLLQDPL*AALQGDGELLQEVRARLQIYRQG 321
Score = 79.0 bits (166), Expect(2) = 1e-022
Identities = 34/53 (64%), Positives = 34/53 (64%)
Frame = -1 / -3
Query: 227 PWRSSCTSXXXLCSGXX*XMSYGRWXXXX*GGR*SGXSCRXXCTCPAXR*KTW 69
PW SSCTS LCSG * S G *GGR*SG SCR CTCPA R*KTW
Sbjct: 221 PWTSSCTSRESLCSGCT*SRSCGTGRRRR*GGR*SGRSCRTPCTCPACR*KTW 63
Score = 74.8 bits (157), Expect(2) = 2e-054
Identities = 33/54 (61%), Positives = 34/54 (62%)
Frame = +2 / +2
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCSXXXXXLT 493
L RAPSK+ SAFSGT DK AACQKT YP LTL YHK KCS LT
Sbjct: 323 LARAPSKICSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILT 484
Score = 61.1 bits (127), Expect(2) = 1e-040
Identities = 26/55 (47%), Positives = 29/55 (52%)
Frame = -1 / -3
Query: 494 WSGXXXXASTXXXSCGXXXXPELXXXAGTXFSGMLRTYXGYQKMQTTACLGPLSV 330
WSG ST SCG P+L GT FSG L TY +QK +CLGPL V
Sbjct: 485 WSGCSLHEST*SSSCGMTHLPKLAFLVGTLFSGRLHTYPEFQKTLNISCLGPLPV 321
Score = 56.5 bits (117), Expect(2) = 3e-035
Identities = 25/54 (46%), Positives = 30/54 (55%)
Frame = +1 / +1
Query: 331 TDKGPKQAVVCIFWYPX*VRSMPENXVPAXXXNSGXXXLPQEXXXVLAXXXXPD 492
T KGPKQ + +FW *V S+PEN VP N G +PQE VL+ PD
Sbjct: 322 TGKGPKQDMFSVFWNSG*VCSLPENSVPTRKANFGR*VIPQELLQVLSWRLHPD 483
Score = 50.6 bits (104), Expect(2) = 1e-022
Identities = 27/54 (50%), Positives = 28/54 (51%)
Frame = -2 / -1
Query: 493 GQXXXXXRALXXXLVVXXXXQS*XXXRVXXFLACCXLIXGTRKCRRQLAWGPCQ 332
GQ RAL LVV QS* V FLA C LI +RK LAWGPCQ
Sbjct: 484 GQDAASMRALEAALVV*LTFQS*LF*WVHCFLAGCTLILSSRKR*TYLAWGPCQ 323
>ref|XM_473290.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 606
Score = 156 bits (336), Expect(2) = 5e-053
Identities = 62/85 (72%), Positives = 63/85 (74%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
MSFTG QDKCT CDKT HFIDLLT YHKTC HCKG SMCSYSSMD LYCKT
Sbjct: 1 MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 180
Query: 251 HFEQLFKXTGSFSKNFTPXXXSSDK 325
HFEQLFK TGSFSK F P S+DK
Sbjct: 181 HFEQLFKETGSFSKKFAPGCRSTDK 255
Score = 123 bits (263), Expect(2) = 6e-039
Identities = 53/77 (68%), Positives = 54/77 (70%)
Frame = -3 / -2
Query: 303 GVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRRSMK 124
G FLEKLPV LKSCSKWVLQ SM+E*LHIE PLQW L VLW VRRSMK
Sbjct: 233 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHIERIPLQWLHLKQVLWYGTPSAVRRSMK 54
Query: 123 WXVLSXXVHLSCXPVKD 73
W VLS VHLSC PVKD
Sbjct: 53 WTVLSHAVHLSCVPVKD 3
Score = 100 bits (214), Expect(2) = 7e-031
Identities = 45/85 (52%), Positives = 50/85 (58%)
Frame = +1 / +3
Query: 73 VFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXXPXXXXXXXXXXXXHGRXXVLQDP 252
VFHR AGQVH RQD PLHRPPH +P D+ Q P HGR +LQDP
Sbjct: 3 VFHRHAGQVHGVRQDRPLHRPPHRRRRPVPQDLLQVQPLQRDSLDVQLLVHGRRPLLQDP 182
Query: 253 LRAALQXDRELLQELHAXXXVIRQG 327
L AALQ D ELLQE+ A + RQG
Sbjct: 183 L*AALQGDGELLQEVRARLQIYRQG 257
Score = 74.8 bits (157), Expect(2) = 5e-053
Identities = 33/54 (61%), Positives = 34/54 (62%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCSXXXXXLT 493
L RAPSK+ SAFSGT DK AACQKT YP LTL YHK KCS LT
Sbjct: 259 LARAPSKICSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILT 420
Score = 73.9 bits (155), Expect(2) = 4e-021
Identities = 33/52 (63%), Positives = 33/52 (63%)
Frame = -1 / -3
Query: 227 PWRSSCTSXXXLCSGXX*XMSYGRWXXXX*GGR*SGXSCRXXCTCPAXR*KT 72
PW SSCTS LCSG * S G *GGR*SG SCR CTCPA R*KT
Sbjct: 157 PWTSSCTSRESLCSGCT*SRSCGTGRRRR*GGR*SGRSCRTPCTCPACR*KT 2
Score = 61.1 bits (127), Expect(2) = 6e-039
Identities = 26/55 (47%), Positives = 29/55 (52%)
Frame = -1 / -3
Query: 494 WSGXXXXASTXXXSCGXXXXPELXXXAGTXFSGMLRTYXGYQKMQTTACLGPLSV 330
WSG ST SCG P+L GT FSG L TY +QK +CLGPL V
Sbjct: 421 WSGCSLHEST*SSSCGMTHLPKLAFLVGTLFSGRLHTYPEFQKTLNISCLGPLPV 257
Score = 56.5 bits (117), Expect(2) = 7e-031
Identities = 25/54 (46%), Positives = 30/54 (55%)
Frame = +1 / +3
Query: 331 TDKGPKQAVVCIFWYPX*VRSMPENXVPAXXXNSGXXXLPQEXXXVLAXXXXPD 492
T KGPKQ + +FW *V S+PEN VP N G +PQE VL+ PD
Sbjct: 258 TGKGPKQDMFSVFWNSG*VCSLPENSVPTRKANFGR*VIPQELLQVLSWRLHPD 419
Score = 50.6 bits (104), Expect(2) = 4e-021
Identities = 27/54 (50%), Positives = 28/54 (51%)
Frame = -2 / -1
Query: 493 GQXXXXXRALXXXLVVXXXXQS*XXXRVXXFLACCXLIXGTRKCRRQLAWGPCQ 332
GQ RAL LVV QS* V FLA C LI +RK LAWGPCQ
Sbjct: 420 GQDAASMRALEAALVV*LTFQS*LF*WVHCFLAGCTLILSSRKR*TYLAWGPCQ 259
>dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131K23, full
insert sequence
Length = 1267
Score = 141 bits (302), Expect(2) = 1e-043
Identities = 53/76 (69%), Positives = 57/76 (75%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+F+G QDKC CDKT HFIDLLT YHK+C HCKG SMCSYSSMD LYCKT
Sbjct: 199 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 378
Query: 251 HFEQLFKXTGSFSKNF 298
HFEQLFK TG+F KNF
Sbjct: 379 HFEQLFKETGTFKKNF 426
Score = 99.1 bits (210), Expect(2) = 3e-024
Identities = 44/72 (61%), Positives = 47/72 (65%)
Frame = -3 / -3
Query: 297 KFLEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRRSMKWX 118
KF K+PV L SCSKWVLQ SM+E*LHIE PLQW L LW* VRRSMK
Sbjct: 425 KFFLKVPVSLNSCSKWVLQ*RTPSMDE*LHIESVPLQWLHLKQDLW*GILSAVRRSMKCT 246
Query: 117 VLSXXVHLSCXP 82
VLS +HLSC P
Sbjct: 245 VLSQALHLSCVP 210
Score = 59.3 bits (123), Expect(2) = 1e-043
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +2 / +1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCSXXXXXLT 493
+ PSKLSS F GT DK AC+KT YP +T+ YH+ KC+ LT
Sbjct: 460 KIPSKLSSVFCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLT 615
Score = 35.9 bits (72), Expect(2) = 3e-024
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3 / -3
Query: 468 HXXXLLW*XXXSRVXXXXGYXVFWHAAXLSXVPEN 364
H +LW* S V GY VF A LS VP+N
Sbjct: 590 HLKQVLW*HSPSMVIFSNGYTVFLQAVHLSWVPQN 486
>ref|NM_197225.1| Oryza sativa (japonica cultivar-group) putative LIM domain protein
(OSJNBb0073N24.9), mRNA
Length = 1040
Score = 141 bits (302), Expect(2) = 1e-043
Identities = 53/76 (69%), Positives = 57/76 (75%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+F+G QDKC CDKT HFIDLLT YHK+C HCKG SMCSYSSMD LYCKT
Sbjct: 178 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 357
Query: 251 HFEQLFKXTGSFSKNF 298
HFEQLFK TG+F KNF
Sbjct: 358 HFEQLFKETGTFKKNF 405
Score = 99.1 bits (210), Expect(2) = 3e-024
Identities = 44/72 (61%), Positives = 47/72 (65%)
Frame = -3 / -1
Query: 297 KFLEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRRSMKWX 118
KF K+PV L SCSKWVLQ SM+E*LHIE PLQW L LW* VRRSMK
Sbjct: 404 KFFLKVPVSLNSCSKWVLQ*RTPSMDE*LHIESVPLQWLHLKQDLW*GILSAVRRSMKCT 225
Query: 117 VLSXXVHLSCXP 82
VLS +HLSC P
Sbjct: 224 VLSQALHLSCVP 189
Score = 59.3 bits (123), Expect(2) = 1e-043
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +2 / +1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCSXXXXXLT 493
+ PSKLSS F GT DK AC+KT YP +T+ YH+ KC+ LT
Sbjct: 439 KIPSKLSSVFCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLT 594
Score = 35.9 bits (72), Expect(2) = 3e-024
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3 / -1
Query: 468 HXXXLLW*XXXSRVXXXXGYXVFWHAAXLSXVPEN 364
H +LW* S V GY VF A LS VP+N
Sbjct: 569 HLKQVLW*HSPSMVIFSNGYTVFLQAVHLSWVPQN 465
>gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone pNS-YP32, mRNA
sequence
Length = 595
Score = 141 bits (302), Expect(2) = 1e-043
Identities = 53/76 (69%), Positives = 57/76 (75%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+F+G QDKC CDKT HFIDLLT YHK+C HCKG SMCSYSSMD LYCKT
Sbjct: 61 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 240
Query: 251 HFEQLFKXTGSFSKNF 298
HFEQLFK TG+F KNF
Sbjct: 241 HFEQLFKETGTFKKNF 288
Score = 99.1 bits (210), Expect(2) = 3e-024
Identities = 44/72 (61%), Positives = 47/72 (65%)
Frame = -3 / -3
Query: 297 KFLEKLPVXLKSCSKWVLQYXXXSMEE*LHIEXXPLQWXXLXHVLW*MXXXXVRRSMKWX 118
KF K+PV L SCSKWVLQ SM+E*LHIE PLQW L LW* VRRSMK
Sbjct: 287 KFFLKVPVSLNSCSKWVLQ*RTPSMDE*LHIESVPLQWLHLKQDLW*GILSAVRRSMKCT 108
Query: 117 VLSXXVHLSCXP 82
VLS +HLSC P
Sbjct: 107 VLSQALHLSCVP 72
Score = 59.3 bits (123), Expect(2) = 1e-043
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +2 / +1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCSXXXXXLT 493
+ PSKLSS F GT DK AC+KT YP +T+ YH+ KC+ LT
Sbjct: 322 KIPSKLSSVFCGTQDKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLT 477
Score = 35.9 bits (72), Expect(2) = 3e-024
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3 / -3
Query: 468 HXXXLLW*XXXSRVXXXXGYXVFWHAAXLSXVPEN 364
H +LW* S V GY VF A LS VP+N
Sbjct: 452 HLKQVLW*HSPSMVIFSNGYTVFLQAVHLSWVPQN 348
>gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010174, whole
genome shotgun sequence
Length = 20753
Score = 87.7 bits (185), Expect(4) = 1e-039
Identities = 36/68 (52%), Positives = 38/68 (55%)
Frame = +2 / +3
Query: 5 EKRSXXXXXACVRAATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXX 184
E+ ACV TMSFTG QDKCT CDKT HFIDLLT YHKTC
Sbjct: 8127 EREQRGGGRACVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCS 8306
Query: 185 HCKGXXSM 208
HCKG S+
Sbjct: 8307 HCKGILSV 8330
Score = 76.7 bits (161), Expect(3) = 4e-023
Identities = 32/61 (52%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 4 GEAIGXXXXCVRSCSHRQASGHHVFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXX 183
GE CVR S S HHVFHR AGQVH RQD PLHRPPH +P D+ Q
Sbjct: 8126 GEGTARGRACVRRRSSTVVSCHHVFHRHAGQVHGVRQDRPLHRPPHRRRRPVPQDLLQVQ 8305
Query: 184 P 186
P
Sbjct: 8306 P 8308
Score = 73.5 bits (154), Expect(4) = 1e-027
Identities = 33/58 (56%), Positives = 34/58 (58%)
Frame = -3 / -2
Query: 204 EXXPLQWXXLXHVLW*MXXXXVRRSMKWXVLSXXVHLSCXPVKDMVPGXLSVAARTHA 31
E PLQW L VLW VRRSMKW VLS VHLSC PVKDMV + THA
Sbjct: 8326 ERIPLQWLHLKQVLWYGTPSAVRRSMKWTVLSHAVHLSCVPVKDMVARDDCRRSTTHA 8153
Score = 73.0 bits (153), Expect(4) = 1e-039
Identities = 28/33 (84%), Positives = 28/33 (84%)
Frame = +2 / +3
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNFTP 304
MCSYSSMD LYCKTHFEQLFK TGSFSK F P
Sbjct: 8445 MCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 8543
Score = 58.8 bits (122), Expect(4) = 1e-027
Identities = 25/33 (75%), Positives = 26/33 (78%)
Frame = -3 / -2
Query: 303 GVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHI 205
G FLEKLPV LKSCSKWVLQ SM+E*LHI
Sbjct: 8542 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHI 8444
Score = 52.4 bits (108), Expect(4) = 1e-039
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYP 415
RAPSK+ SAFSGT DK AACQKT YP
Sbjct: 8754 RAPSKICSAFSGTQDKCAACQKTVYP 8831
Score = 42.8 bits (87), Expect(3) = 4e-023
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 223 HGRXXVLQDPLRAALQXDRELLQELHA 303
HGR +LQDPL AALQ D ELLQE+ A
Sbjct: 8462 HGRRPLLQDPL*AALQGDGELLQEVRA 8542
Score = 40.5 bits (82), Expect(3) = 4e-023
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1 / +2
Query: 331 TDKGPKQAVVCIFWYPX*VRSMPENXVP 414
T KGPKQ + +FW *V S+PEN VP
Sbjct: 8747 TGKGPKQDMFSVFWNSG*VCSLPENSVP 8830
Score = 39.6 bits (80), Expect(4) = 1e-027
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -1 / -3
Query: 413 GTXFSGMLRTYXGYQKMQTTACLGPLSV 330
GT FSG L TY +QK +CLGPL V
Sbjct: 8829 GTLFSGRLHTYPEFQKTLNISCLGPLPV 8746
Score = 25.4 bits (49), Expect(4) = 1e-027
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1 / -3
Query: 494 WSGXXXXASTXXXSCGXXXXPEL 426
WSG ST SCG P+L
Sbjct: 9225 WSGCSLHEST*SSSCGMTHLPKL 9157
Score = 24.9 bits (48), Expect(4) = 1e-039
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2 / +3
Query: 425 LTLXXXXYHKXXXKCSXXXXXLT 493
LTL YHK KCS LT
Sbjct: 9156 LTLEGESYHKSCFKCSHGGCILT 9224
>gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005009, whole
genome shotgun sequence
Length = 78753
Score = 92.7 bits (196), Expect(3) = 8e-039
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = +2 / +3
Query: 47 ATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSY 217
A+ R P MSFTG QDKC CDKT HFIDLLT YHKTC HCKG S+C Y
Sbjct: 76443 ASIRTPAAMSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 76613
Score = 79.0 bits (166), Expect(4) = 4e-025
Identities = 31/51 (60%), Positives = 33/51 (64%)
Frame = -3 / -3
Query: 213 LHIEXXPLQWXXLXHVLW*MXXXXVRRSMKWXVLSXXVHLSCXPVKDMVPG 61
+H E PLQW L HVLW* VRRSMKW VLS +HLSC PV DM G
Sbjct: 76609 IHTERVPLQWLHLKHVLW*ETPSAVRRSMKWTVLSHALHLSCVPVNDMAAG 76457
Score = 68.9 bits (144), Expect(3) = 8e-039
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +2 / +1
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNFT 301
MC+YSSMD LYCKTHFEQLFK TGSFSK F+
Sbjct: 76705 MCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 76800
Score = 55.6 bits (115), Expect(3) = 8e-039
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYP 415
RAPSKLSSAFSGT DK AACQKT YP
Sbjct: 77040 RAPSKLSSAFSGTQDKCAACQKTVYP 77117
Score = 52.8 bits (109), Expect(4) = 4e-025
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -3 / -2
Query: 294 FLEKLPVXLKSCSKWVLQYXXXSMEE*LHI 205
F EKLPV LKSCSK VLQY S+EE*LHI
Sbjct: 76793 FFEKLPVSLKSCSKCVLQYRTPSIEE*LHI 76704
Score = 35.4 bits (71), Expect(4) = 4e-025
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -3 / -3
Query: 414 GYXVFWHAAXLSXVPENA 361
GY VFW AA LS VPENA
Sbjct: 77116 GYTVFWQAAHLS*VPENA 77063
Score = 26.7 bits (52), Expect(4) = 4e-025
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3 / -2
Query: 492 VRXXXXCEHXXXLLW*XXXSRV 427
VR CEH LLW* SRV
Sbjct: 77600 VRMQPPCEHLKQLLW*DSPSRV 77535
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G03
Length = 106401
Score = 92.7 bits (196), Expect(3) = 1e-038
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = +2 / -3
Query: 47 ATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSY 217
A+ R P MSFTG QDKC CDKT HFIDLLT YHKTC HCKG S+C Y
Sbjct: 6175 ASIRTPAAMSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 6005
Score = 79.0 bits (166), Expect(4) = 9e-025
Identities = 31/51 (60%), Positives = 33/51 (64%)
Frame = -3 / +3
Query: 213 LHIEXXPLQWXXLXHVLW*MXXXXVRRSMKWXVLSXXVHLSCXPVKDMVPG 61
+H E PLQW L HVLW* VRRSMKW VLS +HLSC PV DM G
Sbjct: 6009 IHTERVPLQWLHLKHVLW*ETPSAVRRSMKWTVLSHALHLSCVPVNDMAAG 6161
Score = 68.9 bits (144), Expect(3) = 1e-038
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +2 / -1
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNFT 301
MC+YSSMD LYCKTHFEQLFK TGSFSK F+
Sbjct: 5913 MCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 5818
Score = 55.6 bits (115), Expect(3) = 1e-038
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +2 / -3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYP 415
RAPSKLSSAFSGT DK AACQKT YP
Sbjct: 5578 RAPSKLSSAFSGTQDKCAACQKTVYP 5501
Score = 52.8 bits (109), Expect(4) = 9e-025
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -3 / +2
Query: 294 FLEKLPVXLKSCSKWVLQYXXXSMEE*LHI 205
F EKLPV LKSCSK VLQY S+EE*LHI
Sbjct: 5825 FFEKLPVSLKSCSKCVLQYRTPSIEE*LHI 5914
Score = 35.4 bits (71), Expect(4) = 9e-025
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -3 / +3
Query: 414 GYXVFWHAAXLSXVPENA 361
GY VFW AA LS VPENA
Sbjct: 5502 GYTVFWQAAHLS*VPENA 5555
Score = 26.7 bits (52), Expect(4) = 9e-025
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3 / +2
Query: 492 VRXXXXCEHXXXLLW*XXXSRV 427
VR CEH LLW* SRV
Sbjct: 5018 VRMQPPCEHLKQLLW*DSPSRV 5083
>dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0408D11, ***
SEQUENCING IN PROGRESS ***
Length = 138934
Score = 92.7 bits (196), Expect(3) = 2e-038
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = +2 / +3
Query: 47 ATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSY 217
A+ R P MSFTG QDKC CDKT HFIDLLT YHKTC HCKG S+C Y
Sbjct: 77817 ASIRTPAAMSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 77987
Score = 79.0 bits (166), Expect(4) = 2e-024
Identities = 31/51 (60%), Positives = 33/51 (64%)
Frame = -3 / -1
Query: 213 LHIEXXPLQWXXLXHVLW*MXXXXVRRSMKWXVLSXXVHLSCXPVKDMVPG 61
+H E PLQW L HVLW* VRRSMKW VLS +HLSC PV DM G
Sbjct: 77983 IHTERVPLQWLHLKHVLW*ETPSAVRRSMKWTVLSHALHLSCVPVNDMAAG 77831
Score = 68.9 bits (144), Expect(3) = 2e-038
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +2 / +1
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNFT 301
MC+YSSMD LYCKTHFEQLFK TGSFSK F+
Sbjct: 78079 MCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 78174
Score = 55.6 bits (115), Expect(3) = 2e-038
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +2 / +3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYP 415
RAPSKLSSAFSGT DK AACQKT YP
Sbjct: 78414 RAPSKLSSAFSGTQDKCAACQKTVYP 78491
Score = 52.8 bits (109), Expect(4) = 2e-024
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -3 / -3
Query: 294 FLEKLPVXLKSCSKWVLQYXXXSMEE*LHI 205
F EKLPV LKSCSK VLQY S+EE*LHI
Sbjct: 78167 FFEKLPVSLKSCSKCVLQYRTPSIEE*LHI 78078
Score = 35.4 bits (71), Expect(4) = 2e-024
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -3 / -1
Query: 414 GYXVFWHAAXLSXVPENA 361
GY VFW AA LS VPENA
Sbjct: 78490 GYTVFWQAAHLS*VPENA 78437
Score = 26.7 bits (52), Expect(4) = 2e-024
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3 / -3
Query: 492 VRXXXXCEHXXXLLW*XXXSRV 427
VR CEH LLW* SRV
Sbjct: 78974 VRMQPPCEHLKQLLW*DSPSRV 78909
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0010C01
Length = 186185
Score = 92.7 bits (196), Expect(3) = 4e-038
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = +2 / -1
Query: 47 ATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSY 217
A+ R P MSFTG QDKC CDKT HFIDLLT YHKTC HCKG S+C Y
Sbjct: 162245 ASIRTPAAMSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 162075
Score = 79.0 bits (166), Expect(4) = 4e-024
Identities = 31/51 (60%), Positives = 33/51 (64%)
Frame = -3 / +1
Query: 213 LHIEXXPLQWXXLXHVLW*MXXXXVRRSMKWXVLSXXVHLSCXPVKDMVPG 61
+H E PLQW L HVLW* VRRSMKW VLS +HLSC PV DM G
Sbjct: 162079 IHTERVPLQWLHLKHVLW*ETPSAVRRSMKWTVLSHALHLSCVPVNDMAAG 162231
Score = 68.9 bits (144), Expect(3) = 4e-038
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +2 / -2
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNFT 301
MC+YSSMD LYCKTHFEQLFK TGSFSK F+
Sbjct: 161983 MCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 161888
Score = 55.6 bits (115), Expect(3) = 4e-038
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +2 / -1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYP 415
RAPSKLSSAFSGT DK AACQKT YP
Sbjct: 161648 RAPSKLSSAFSGTQDKCAACQKTVYP 161571
Score = 52.8 bits (109), Expect(4) = 4e-024
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -3 / +3
Query: 294 FLEKLPVXLKSCSKWVLQYXXXSMEE*LHI 205
F EKLPV LKSCSK VLQY S+EE*LHI
Sbjct: 161895 FFEKLPVSLKSCSKCVLQYRTPSIEE*LHI 161984
Score = 35.4 bits (71), Expect(4) = 4e-024
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -3 / +1
Query: 414 GYXVFWHAAXLSXVPENA 361
GY VFW AA LS VPENA
Sbjct: 161572 GYTVFWQAAHLS*VPENA 161625
Score = 26.7 bits (52), Expect(4) = 4e-024
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3 / +3
Query: 492 VRXXXXCEHXXXLLW*XXXSRV 427
VR CEH LLW* SRV
Sbjct: 161088 VRMQPPCEHLKQLLW*DSPSRV 161153
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
complete sequence
Length = 121056
Score = 87.7 bits (185), Expect(3) = 3e-037
Identities = 36/68 (52%), Positives = 38/68 (55%)
Frame = +2 / -3
Query: 5 EKRSXXXXXACVRAATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXX 184
E+ ACV TMSFTG QDKCT CDKT HFIDLLT YHKTC
Sbjct: 35578 EREQRGGGRACVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCS 35399
Query: 185 HCKGXXSM 208
HCKG S+
Sbjct: 35398 HCKGILSV 35375
Score = 76.7 bits (161), Expect(3) = 1e-021
Identities = 32/61 (52%), Positives = 34/61 (55%)
Frame = +1 / -2
Query: 4 GEAIGXXXXCVRSCSHRQASGHHVFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXX 183
GE CVR S S HHVFHR AGQVH RQD PLHRPPH +P D+ Q
Sbjct: 35579 GEGTARGRACVRRRSSTVVSCHHVFHRHAGQVHGVRQDRPLHRPPHRRRRPVPQDLLQVQ 35400
Query: 184 P 186
P
Sbjct: 35399 P 35397
Score = 73.5 bits (154), Expect(3) = 4e-025
Identities = 33/58 (56%), Positives = 34/58 (58%)
Frame = -3 / +3
Query: 204 EXXPLQWXXLXHVLW*MXXXXVRRSMKWXVLSXXVHLSCXPVKDMVPGXLSVAARTHA 31
E PLQW L VLW VRRSMKW VLS VHLSC PVKDMV + THA
Sbjct: 35379 ERIPLQWLHLKQVLWYGTPSAVRRSMKWTVLSHAVHLSCVPVKDMVARDDCRRSTTHA 35552
Score = 73.0 bits (153), Expect(3) = 3e-037
Identities = 28/33 (84%), Positives = 28/33 (84%)
Frame = +2 / -3
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNFTP 304
MCSYSSMD LYCKTHFEQLFK TGSFSK F P
Sbjct: 35260 MCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 35162
Score = 58.8 bits (122), Expect(3) = 4e-025
Identities = 25/33 (75%), Positives = 26/33 (78%)
Frame = -3 / +3
Query: 303 GVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHI 205
G FLEKLPV LKSCSKWVLQ SM+E*LHI
Sbjct: 35163 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHI 35261
Score = 52.4 bits (108), Expect(3) = 3e-037
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / -3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYP 415
RAPSK+ SAFSGT DK AACQKT YP
Sbjct: 34951 RAPSKICSAFSGTQDKCAACQKTVYP 34874
Score = 42.8 bits (87), Expect(3) = 1e-021
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +1 / -2
Query: 223 HGRXXVLQDPLRAALQXDRELLQELHA 303
HGR +LQDPL AALQ D ELLQE+ A
Sbjct: 35243 HGRRPLLQDPL*AALQGDGELLQEVRA 35163
Score = 40.5 bits (82), Expect(3) = 1e-021
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1 / -2
Query: 331 TDKGPKQAVVCIFWYPX*VRSMPENXVP 414
T KGPKQ + +FW *V S+PEN VP
Sbjct: 34958 TGKGPKQDMFSVFWNSG*VCSLPENSVP 34875
Score = 39.6 bits (80), Expect(3) = 4e-025
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -1 / +1
Query: 413 GTXFSGMLRTYXGYQKMQTTACLGPLSV 330
GT FSG L TY +QK +CLGPL V
Sbjct: 34876 GTLFSGRLHTYPEFQKTLNISCLGPLPV 34959
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 87.7 bits (185), Expect(3) = 4e-037
Identities = 36/68 (52%), Positives = 38/68 (55%)
Frame = +2 / -1
Query: 5 EKRSXXXXXACVRAATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXX 184
E+ ACV TMSFTG QDKCT CDKT HFIDLLT YHKTC
Sbjct: 132906 EREQRGGGRACVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCS 132727
Query: 185 HCKGXXSM 208
HCKG S+
Sbjct: 132726 HCKGILSV 132703
Score = 76.7 bits (161), Expect(3) = 2e-021
Identities = 32/61 (52%), Positives = 34/61 (55%)
Frame = +1 / -3
Query: 4 GEAIGXXXXCVRSCSHRQASGHHVFHRXAGQVHXXRQDXPLHRPPHXXXXHLP*DMXQXX 183
GE CVR S S HHVFHR AGQVH RQD PLHRPPH +P D+ Q
Sbjct: 132907 GEGTARGRACVRRRSSTVVSCHHVFHRHAGQVHGVRQDRPLHRPPHRRRRPVPQDLLQVQ 132728
Query: 184 P 186
P
Sbjct: 132727 P 132725
Score = 73.5 bits (154), Expect(3) = 6e-025
Identities = 33/58 (56%), Positives = 34/58 (58%)
Frame = -3 / +2
Query: 204 EXXPLQWXXLXHVLW*MXXXXVRRSMKWXVLSXXVHLSCXPVKDMVPGXLSVAARTHA 31
E PLQW L VLW VRRSMKW VLS VHLSC PVKDMV + THA
Sbjct: 132707 ERIPLQWLHLKQVLWYGTPSAVRRSMKWTVLSHAVHLSCVPVKDMVARDDCRRSTTHA 132880
Score = 73.0 bits (153), Expect(3) = 4e-037
Identities = 28/33 (84%), Positives = 28/33 (84%)
Frame = +2 / -1
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNFTP 304
MCSYSSMD LYCKTHFEQLFK TGSFSK F P
Sbjct: 132588 MCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 132490
Score = 58.8 bits (122), Expect(3) = 6e-025
Identities = 25/33 (75%), Positives = 26/33 (78%)
Frame = -3 / +2
Query: 303 GVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHI 205
G FLEKLPV LKSCSKWVLQ SM+E*LHI
Sbjct: 132491 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHI 132589
Score = 52.4 bits (108), Expect(3) = 4e-037
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / -1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYP 415
RAPSK+ SAFSGT DK AACQKT YP
Sbjct: 132279 RAPSKICSAFSGTQDKCAACQKTVYP 132202
Score = 42.8 bits (87), Expect(3) = 2e-021
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +1 / -3
Query: 223 HGRXXVLQDPLRAALQXDRELLQELHA 303
HGR +LQDPL AALQ D ELLQE+ A
Sbjct: 132571 HGRRPLLQDPL*AALQGDGELLQEVRA 132491
Score = 40.5 bits (82), Expect(3) = 2e-021
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1 / -3
Query: 331 TDKGPKQAVVCIFWYPX*VRSMPENXVP 414
T KGPKQ + +FW *V S+PEN VP
Sbjct: 132286 TGKGPKQDMFSVFWNSG*VCSLPENSVP 132203
Score = 39.6 bits (80), Expect(3) = 6e-025
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -1 / +3
Query: 413 GTXFSGMLRTYXGYQKMQTTACLGPLSV 330
GT FSG L TY +QK +CLGPL V
Sbjct: 132204 GTLFSGRLHTYPEFQKTLNISCLGPLPV 132287
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 92.7 bits (196), Expect(3) = 8e-035
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = +2 / -2
Query: 47 ATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSY 217
A+ R P MSFTG QDKC CDKT HFIDLLT YHKTC HCKG S+C Y
Sbjct: 924568 ASIRTPAAMSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 924398
Score = 79.0 bits (166), Expect(2) = 3e-023
Identities = 31/51 (60%), Positives = 33/51 (64%)
Frame = -3 / +3
Query: 213 LHIEXXPLQWXXLXHVLW*MXXXXVRRSMKWXVLSXXVHLSCXPVKDMVPG 61
+H E PLQW L HVLW* VRRSMKW VLS +HLSC PV DM G
Sbjct: 924402 IHTERVPLQWLHLKHVLW*ETPSAVRRSMKWTVLSHALHLSCVPVNDMAAG 924554
Score = 68.9 bits (144), Expect(3) = 8e-035
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +2 / -3
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNFT 301
MC+YSSMD LYCKTHFEQLFK TGSFSK F+
Sbjct: 924306 MCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 924211
Score = 55.6 bits (115), Expect(3) = 8e-035
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = +2 / -2
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYP 415
RAPSKLSSAFSGT DK AACQKT YP
Sbjct: 923971 RAPSKLSSAFSGTQDKCAACQKTVYP 923894
Score = 52.8 bits (109), Expect(2) = 3e-023
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -3 / +2
Query: 294 FLEKLPVXLKSCSKWVLQYXXXSMEE*LHI 205
F EKLPV LKSCSK VLQY S+EE*LHI
Sbjct: 924218 FFEKLPVSLKSCSKCVLQYRTPSIEE*LHI 924307
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 87.7 bits (185), Expect(3) = 2e-034
Identities = 36/68 (52%), Positives = 38/68 (55%)
Frame = +2 / -3
Query: 5 EKRSXXXXXACVRAATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXX 184
E+ ACV TMSFTG QDKCT CDKT HFIDLLT YHKTC
Sbjct: 372604 EREQRGGGRACVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCS 372425
Query: 185 HCKGXXSM 208
HCKG S+
Sbjct: 372424 HCKGILSV 372401
Score = 73.5 bits (154), Expect(2) = 2e-023
Identities = 33/58 (56%), Positives = 34/58 (58%)
Frame = -3 / +3
Query: 204 EXXPLQWXXLXHVLW*MXXXXVRRSMKWXVLSXXVHLSCXPVKDMVPGXLSVAARTHA 31
E PLQW L VLW VRRSMKW VLS VHLSC PVKDMV + THA
Sbjct: 372405 ERIPLQWLHLKQVLWYGTPSAVRRSMKWTVLSHAVHLSCVPVKDMVARDDCRRSTTHA 372578
Score = 73.0 bits (153), Expect(3) = 2e-034
Identities = 28/33 (84%), Positives = 28/33 (84%)
Frame = +2 / -3
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNFTP 304
MCSYSSMD LYCKTHFEQLFK TGSFSK F P
Sbjct: 372286 MCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 372188
Score = 58.8 bits (122), Expect(2) = 2e-023
Identities = 25/33 (75%), Positives = 26/33 (78%)
Frame = -3 / +3
Query: 303 GVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHI 205
G FLEKLPV LKSCSKWVLQ SM+E*LHI
Sbjct: 372189 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHI 372287
Score = 52.4 bits (108), Expect(3) = 2e-034
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / -3
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYP 415
RAPSK+ SAFSGT DK AACQKT YP
Sbjct: 371977 RAPSKICSAFSGTQDKCAACQKTVYP 371900
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 87.7 bits (185), Expect(3) = 3e-033
Identities = 36/68 (52%), Positives = 38/68 (55%)
Frame = +2 / -2
Query: 5 EKRSXXXXXACVRAATDRXPGTMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXX 184
E+ ACV TMSFTG QDKCT CDKT HFIDLLT YHKTC
Sbjct: 4427804 EREQRGGGRACVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCS 4427625
Query: 185 HCKGXXSM 208
HCKG S+
Sbjct: 4427624 HCKGILSV 4427601
Score = 73.5 bits (154), Expect(2) = 2e-023
Identities = 33/58 (56%), Positives = 34/58 (58%)
Frame = -3 / +1
Query: 204 EXXPLQWXXLXHVLW*MXXXXVRRSMKWXVLSXXVHLSCXPVKDMVPGXLSVAARTHA 31
E PLQW L VLW VRRSMKW VLS VHLSC PVKDMV + THA
Sbjct: 4427605 ERIPLQWLHLKQVLWYGTPSAVRRSMKWTVLSHAVHLSCVPVKDMVARDDCRRSTTHA 4427778
Score = 73.0 bits (153), Expect(3) = 3e-033
Identities = 28/33 (84%), Positives = 28/33 (84%)
Frame = +2 / -2
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNFTP 304
MCSYSSMD LYCKTHFEQLFK TGSFSK F P
Sbjct: 4427486 MCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 4427388
Score = 58.8 bits (122), Expect(2) = 2e-023
Identities = 25/33 (75%), Positives = 26/33 (78%)
Frame = -3 / +1
Query: 303 GVKFLEKLPVXLKSCSKWVLQYXXXSMEE*LHI 205
G FLEKLPV LKSCSKWVLQ SM+E*LHI
Sbjct: 4427389 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHI 4427487
Score = 52.4 bits (108), Expect(3) = 3e-033
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2 / -2
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYP 415
RAPSK+ SAFSGT DK AACQKT YP
Sbjct: 4427177 RAPSKICSAFSGTQDKCAACQKTVYP 4427100
>gb|AACV01021892.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021892, whole
genome shotgun sequence
Length = 87744
Score = 79.9 bits (168), Expect(3) = 6e-032
Identities = 28/48 (58%), Positives = 33/48 (68%)
Frame = +2 / -2
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCS 214
M+F+G QDKC CDKT HFIDLLT YHK+C HCKG S+C+
Sbjct: 51455 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSVCT 51312
Score = 69.3 bits (145), Expect(3) = 6e-032
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2 / -3
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNF 298
MCSYSSMD LYCKTHFEQLFK TG+F KNF
Sbjct: 51202 MCSYSSMDGVLYCKTHFEQLFKETGTFKKNF 51110
Score = 45.1 bits (92), Expect(3) = 6e-032
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2 / -1
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYH 451
+ PSKLSS F GT DK AC+KT YP + + H
Sbjct: 50763 KIPSKLSSVFCGTQDKCTACKKTVYPLEKVIISFSDDH 50650
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
sequence
Length = 130058
Score = 79.9 bits (168), Expect(3) = 1e-031
Identities = 28/48 (58%), Positives = 33/48 (68%)
Frame = +2 / -3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCS 214
M+F+G QDKC CDKT HFIDLLT YHK+C HCKG S+C+
Sbjct: 45027 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSVCT 44884
Score = 69.3 bits (145), Expect(3) = 1e-031
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2 / -1
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNF 298
MCSYSSMD LYCKTHFEQLFK TG+F KNF
Sbjct: 44774 MCSYSSMDGVLYCKTHFEQLFKETGTFKKNF 44682
Score = 45.1 bits (92), Expect(3) = 1e-031
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2 / -2
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYH 451
+ PSKLSS F GT DK AC+KT YP + + H
Sbjct: 44335 KIPSKLSSVFCGTQDKCTACKKTVYPLEKVIISFSDDH 44222
>dbj|AK058507.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G03, full
insert sequence
Length = 962
Score = 94.5 bits (200), Expect(2) = 2e-030
Identities = 34/74 (45%), Positives = 49/74 (66%)
Frame = +2 / +3
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H++C HCK S+ +YSS++ YCK HF
Sbjct: 180 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 359
Query: 257 EQLFKXTGSFSKNF 298
EQLFK TGS++K+F
Sbjct: 360 EQLFKETGSYNKSF 401
Score = 61.1 bits (127), Expect(2) = 2e-030
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT +K A C KT YP +T+ YHK KCS
Sbjct: 444 LTRSPSKAARMFSGTQEKCATCSKTAYPLEKVTVEGQAYHKSCFKCS 584
>ref|NM_187463.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 591
Score = 94.5 bits (200), Expect(2) = 2e-030
Identities = 34/74 (45%), Positives = 49/74 (66%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H++C HCK S+ +YSS++ YCK HF
Sbjct: 4 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 183
Query: 257 EQLFKXTGSFSKNF 298
EQLFK TGS++K+F
Sbjct: 184 EQLFKETGSYNKSF 225
Score = 61.1 bits (127), Expect(2) = 2e-030
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT +K A C KT YP +T+ YHK KCS
Sbjct: 268 LTRSPSKAARMFSGTQEKCATCSKTAYPLEKVTVEGQAYHKSCFKCS 408
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 79.9 bits (168), Expect(3) = 1e-028
Identities = 28/48 (58%), Positives = 33/48 (68%)
Frame = +2 / -3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCS 214
M+F+G QDKC CDKT HFIDLLT YHK+C HCKG S+C+
Sbjct: 605543 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSVCT 605400
Score = 69.3 bits (145), Expect(3) = 1e-028
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2 / -1
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNF 298
MCSYSSMD LYCKTHFEQLFK TG+F KNF
Sbjct: 605290 MCSYSSMDGVLYCKTHFEQLFKETGTFKKNF 605198
Score = 45.1 bits (92), Expect(3) = 1e-028
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2 / -2
Query: 338 RAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYH 451
+ PSKLSS F GT DK AC+KT YP + + H
Sbjct: 604851 KIPSKLSSVFCGTQDKCTACKKTVYPLEKVIISFSDDH 604738
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 79.9 bits (168), Expect(2) = 2e-028
Identities = 28/48 (58%), Positives = 33/48 (68%)
Frame = +2 / -3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCS 214
M+F+G QDKC CDKT HFIDLLT YHK+C HCKG S+C+
Sbjct: 6719807 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSVCT 6719664
Score = 69.3 bits (145), Expect(2) = 2e-028
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = +2 / -1
Query: 206 MCSYSSMDXXLYCKTHFEQLFKXTGSFSKNF 298
MCSYSSMD LYCKTHFEQLFK TG+F KNF
Sbjct: 6719554 MCSYSSMDGVLYCKTHFEQLFKETGTFKKNF 6719462
>gb|CV723028.1|CV723028 root--02-E17.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--02-E17, mRNA sequence
Length = 482
Score = 94.5 bits (200), Expect(2) = 3e-028
Identities = 34/74 (45%), Positives = 49/74 (66%)
Frame = +2 / +3
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H++C HCK S+ +YSS++ YCK HF
Sbjct: 93 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 272
Query: 257 EQLFKXTGSFSKNF 298
EQLFK TGS++K+F
Sbjct: 273 EQLFKETGSYNKSF 314
Score = 54.2 bits (112), Expect(2) = 3e-028
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHK 454
LTR+PSK + FSGT +K A C KT YP +T+ YHK
Sbjct: 357 LTRSPSKAARMFSGTQEKCATCSKTAYPLEKVTVEGQAYHK 479
>gb|AU063991.1|AU063991 AU063991 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2911_1A, mRNA sequence
Length = 413
Score = 121 bits (258), Expect = 7e-026
Identities = 46/74 (62%), Positives = 51/74 (68%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKT 250
M+F+G QDKC CDKT HFIDLLT YHK+C HCKG SMCSYSSMD LYCKT
Sbjct: 175 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGGLYCKT 354
Query: 251 HFEQLFKXTGSFSK 292
F FK TG+F +
Sbjct: 355 XF*AAFKGTGTFKR 396
>gb|AU063889.1|AU063889 AU063889 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1632_1A, mRNA sequence
Length = 463
Score = 95.0 bits (201), Expect(2) = 1e-025
Identities = 35/53 (66%), Positives = 38/53 (71%)
Frame = +2 / +1
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMD 229
M+F+G QDKC CDKT HFIDLLT YHK+C HCKG SMCSYSSMD
Sbjct: 175 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMD 333
Score = 44.6 bits (91), Expect(2) = 1e-025
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2 / +2
Query: 236 LYCKTHFEQLFKXTGSFSK 292
LYCKTHFEQLFK TG+F K
Sbjct: 341 LYCKTHFEQLFKETGTFKK 397
>gb|CF323532.1|CF323532 HDN--04-B15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-B15, mRNA sequence
Length = 512
Score = 94.5 bits (200), Expect(2) = 2e-025
Identities = 34/74 (45%), Positives = 49/74 (66%)
Frame = +2 / +1
Query: 77 FTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHF 256
F+G Q KC C KT + +D L+ ++H++C HCK S+ +YSS++ YCK HF
Sbjct: 163 FSGTQQKCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHF 342
Query: 257 EQLFKXTGSFSKNF 298
EQLFK TGS++K+F
Sbjct: 343 EQLFKETGSYNKSF 384
Score = 44.6 bits (91), Expect(2) = 2e-025
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYP 415
LTR+PSK + FSGT +K A C KT YP
Sbjct: 427 LTRSPSKAARMFSGTQEKCATCSKTAYP 510
>gb|CD670811.1|CD670811 OsMR230 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 612
Score = 77.1 bits (162), Expect(2) = 4e-025
Identities = 28/62 (45%), Positives = 42/62 (67%)
Frame = +2 / +1
Query: 113 KTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHFEQLFKXTGSFSK 292
KT + +D L+ ++H++C HCK S+ +YSS++ YCK HFEQLFK TGS++K
Sbjct: 55 KTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHFEQLFKETGSYNK 234
Query: 293 NF 298
+F
Sbjct: 235 SF 240
Score = 61.1 bits (127), Expect(2) = 4e-025
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +2 / +1
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR+PSK + FSGT +K A C KT YP +T+ YHK KCS
Sbjct: 283 LTRSPSKAARMFSGTQEKCATCSKTAYPLEKVTVEGQAYHKSCFKCS 423
>gb|C71856.1|C71856 C71856 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0473_1A, mRNA sequence
Length = 459
Score = 88.1 bits (186), Expect(2) = 4e-024
Identities = 34/53 (64%), Positives = 36/53 (67%)
Frame = +2 / +3
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMD 229
M+F+G QDKC C KT H IDLLT YHK C HCKG SMCSYSSMD
Sbjct: 186 MTFSGTQDKCNACXKTVHXIDLLTADSIPYHKXCFXCSHCKGTLSMCSYSSMD 344
Score = 46.0 bits (94), Expect(2) = 4e-024
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +2 / +1
Query: 236 LYCKTHFEQLFKXTGSFSKNF 298
LYCKTHFEQLFK TG+F + F
Sbjct: 352 LYCKTHFEQLFKETGTFKRTF 414
>dbj|AK102383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092C12, full
insert sequence
Length = 4323
Score = 82.2 bits (173), Expect(2) = 4e-023
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = +2 / +3
Query: 83 GXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTHFEQ 262
G KC C +T + ++ L +YH+ C HCK +YSS++ LYCK H++Q
Sbjct: 270 GTTQKCDSCGRTVYTVEELAADGRVYHRPCFRCTHCKATLQFSNYSSVEGVLYCKPHYDQ 449
Query: 263 LFKXTGSFSKNFTPXXXSS 319
+ K TGS K+F S+
Sbjct: 450 ILKSTGSLEKSFEGTSKSA 506
Score = 49.2 bits (101), Expect(2) = 4e-023
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2 / +3
Query: 344 PSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
P++ SS F GT DK C KT YP + L YHK +C+
Sbjct: 540 PNRFSSMFVGTQDKCVVCNKTVYPLEKVNLNGSSYHKSCFRCT 668
>gb|C72613.1|C72613 C72613 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1930_1A, mRNA sequence
Length = 396
Score = 88.1 bits (186), Expect(2) = 2e-022
Identities = 32/50 (64%), Positives = 35/50 (70%)
Frame = +2 / +2
Query: 71 MSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYS 220
M+F+G QDKC CDKT HFIDLLT YHK+C HCKG SMCSYS
Sbjct: 173 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYS 322
Score = 40.0 bits (81), Expect(2) = 2e-022
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +2 / +3
Query: 221 SMDXXLYCKTHFEQLFKXTGSFSK 292
SMD LYCKTHFE K G+F K
Sbjct: 324 SMDGGLYCKTHFEAAIKGKGTFKK 395
>gb|AU102059.1|AU102059 AU102059 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6194, mRNA sequence
Length = 404
Score = 102 bits (217), Expect(2) = 4e-022
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +2 / +2
Query: 74 SFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCKTH 253
SF G KC CDKT + +D LT +YHK C HCKG + +Y+S + LYC+ H
Sbjct: 77 SFQGTTTKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPH 256
Query: 254 FEQLFKXTGSFSKNF 298
F+QLFK TGS K+F
Sbjct: 257 FDQLFKRTGSLDKSF 301
Score = 24.9 bits (48), Expect(2) = 4e-022
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2 / +2
Query: 299 TPXXXSSDKXXLTRAPSKLSSAFSGTXDK 385
TP +K K+SSAF+GT +K
Sbjct: 308 TPKVVKPEKTVENENAIKVSSAFAGTREK 394
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,025,085,477
Number of Sequences: 438736
Number of extensions: 18076125
Number of successful extensions: 78097
Number of sequences better than 1.0e-020: 39
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 96250821402
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)