TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.1
(393 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA 135 2e-030
dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA... 131 3e-029
ref|XM_473290.1| Oryza sativa (japonica cultivar-group), p... 128 3e-028
gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flow... 118 3e-025
dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA... 118 3e-025
ref|NM_197225.1| Oryza sativa (japonica cultivar-group) put... 118 3e-025
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 72 2e-024
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 75 2e-024
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 72 2e-024
dbj|AP004768.3| Oryza sativa (japonica cultivar-group) geno... 75 2e-024
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 72 2e-024
dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chro... 75 2e-024
emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromoso... 72 2e-024
dbj|AP004133.3| Oryza sativa (japonica cultivar-group) geno... 75 2e-024
gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) c... 75 2e-024
gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) c... 72 2e-024
>ref|XM_466988.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 621
Score = 135 bits (290), Expect = 2e-030
Identities = 59/108 (54%), Positives = 60/108 (55%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
MSFTG KC CDK HFIDLLT YHKT HCKG SM YSSMD LYCKT
Sbjct: 1 MSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKT 180
Query: 249 HFXQLFKXTGSFSKNFTPXXXXSXXXXLTRXPSKXXXXXSXXQDXXXA 392
HF QLFK TGSFSK F+ S R PSK S QD A
Sbjct: 181 HFEQLFKETGSFSKKFSQGGKSSEKSDQGRAPSKLSSAFSGTQDKCAA 324
>dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034M24, full
insert sequence
Length = 955
Score = 131 bits (281), Expect = 3e-029
Identities = 55/90 (61%), Positives = 55/90 (61%)
Frame = +3 / +2
Query: 33 CVRAATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXX 212
CV TMSFTG KCT CDK HFIDLLT YHKT HCKG SM
Sbjct: 29 CVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCS 208
Query: 213 YSSMDXXLYCKTHFXQLFKXTGSFSKNFTP 302
YSSMD LYCKTHF QLFK TGSFSK F P
Sbjct: 209 YSSMDGVLYCKTHFEQLFKETGSFSKKFAP 298
Score = 105 bits (225), Expect = 2e-021
Identities = 49/84 (58%), Positives = 50/84 (59%)
Frame = +1 / +3
Query: 67 PCLSPARXTSAXXATXXXTSSTSSXXXXXSTIRHXXXXXTAKGXSRCXATPPWTXXCTAR 246
PCLSPAR TSA AT TSSTSS T R TAKG SRC AT PWT TAR
Sbjct: 63 PCLSPARRTSARRATRPSTSSTSSPPTASRTTRPASSAATAKGFSRCAATRPWTASSTAR 242
Query: 247 PTSXSSSXXPGASPRTSRQXXXXQ 318
PT SSS GASPR+SRQ Q
Sbjct: 243 PTLSSSSRRRGASPRSSRQVADLQ 314
Score = 102 bits (217), Expect(2) = 1e-021
Identities = 47/79 (59%), Positives = 48/79 (60%)
Frame = -3 / -2
Query: 301 GVKFLEKLPVXLKSCXKWVLQYXXXSMEE*XXIEXXPLQWXXXXXVLW*XXXXXVRRSMK 122
G FLEKLPV LKSC KWVLQ SM+E* IE PLQW VLW VRRSMK
Sbjct: 297 GANFLEKLPVSLKSCSKWVLQ*RTPSMDE*LHIERIPLQWLHLKQVLWYGTPSAVRRSMK 118
Query: 121 XXXLSXXVHLXXXPVKDMV 65
LS VHL PVKDMV
Sbjct: 117 WTVLSHAVHLSCVPVKDMV 61
Score = 23.5 bits (45), Expect(2) = 1e-021
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2 / -1
Query: 380 ILXXRXXXXXLAWXPCQ 330
IL R LAW PCQ
Sbjct: 373 ILSSRKR*TYLAWGPCQ 323
>ref|XM_473290.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 606
Score = 128 bits (274), Expect = 3e-028
Identities = 52/78 (66%), Positives = 52/78 (66%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
MSFTG KCT CDK HFIDLLT YHKT HCKG SM YSSMD LYCKT
Sbjct: 1 MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 180
Query: 249 HFXQLFKXTGSFSKNFTP 302
HF QLFK TGSFSK F P
Sbjct: 181 HFEQLFKETGSFSKKFAP 234
>gb|BP185090.1|BP185090 BP185090 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone pNS-YP32, mRNA
sequence
Length = 595
Score = 118 bits (252), Expect = 3e-025
Identities = 46/76 (60%), Positives = 50/76 (65%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+F+G KC CDK HFIDLLT YHK+ HCKG SM YSSMD LYCKT
Sbjct: 61 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 240
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLFK TG+F KNF
Sbjct: 241 HFEQLFKETGTFKKNF 288
>dbj|AK072520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131K23, full
insert sequence
Length = 1267
Score = 118 bits (252), Expect = 3e-025
Identities = 46/76 (60%), Positives = 50/76 (65%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+F+G KC CDK HFIDLLT YHK+ HCKG SM YSSMD LYCKT
Sbjct: 199 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 378
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLFK TG+F KNF
Sbjct: 379 HFEQLFKETGTFKKNF 426
>ref|NM_197225.1| Oryza sativa (japonica cultivar-group) putative LIM domain protein
(OSJNBb0073N24.9), mRNA
Length = 1040
Score = 118 bits (252), Expect = 3e-025
Identities = 46/76 (60%), Positives = 50/76 (65%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+F+G KC CDK HFIDLLT YHK+ HCKG SM YSSMD LYCKT
Sbjct: 178 MTFSGTQDKCNACDKTVHFIDLLTADSIPYHKSCFRCSHCKGTLSMCSYSSMDGVLYCKT 357
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLFK TG+F KNF
Sbjct: 358 HFEQLFKETGTFKKNF 405
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 71.6 bits (150), Expect(2) = 2e-024
Identities = 30/58 (51%), Positives = 31/58 (53%)
Frame = +3 / -2
Query: 33 CVRAATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSM 206
CV TMSFTG KCT CDK HFIDLLT YHKT HCKG S+
Sbjct: 4427774 CVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSV 4427601
Score = 63.4 bits (132), Expect(2) = 2e-024
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = +3 / -2
Query: 204 MXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFTP 302
M YSSMD LYCKTHF QLFK TGSFSK F P
Sbjct: 4427486 MCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 4427388
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 74.8 bits (157), Expect(2) = 2e-024
Identities = 30/57 (52%), Positives = 32/57 (56%)
Frame = +3 / -2
Query: 45 ATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXY 215
A+ R P MSFTG KC CDK HFIDLLT YHKT HCKG S+ Y
Sbjct: 924568 ASIRTPAAMSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 924398
Score = 60.2 bits (125), Expect(2) = 2e-024
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +3 / -3
Query: 204 MXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFT 299
M YSSMD LYCKTHF QLFK TGSFSK F+
Sbjct: 924306 MCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 924211
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 71.6 bits (150), Expect(2) = 2e-024
Identities = 30/58 (51%), Positives = 31/58 (53%)
Frame = +3 / -3
Query: 33 CVRAATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSM 206
CV TMSFTG KCT CDK HFIDLLT YHKT HCKG S+
Sbjct: 372574 CVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSV 372401
Score = 63.4 bits (132), Expect(2) = 2e-024
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = +3 / -3
Query: 204 MXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFTP 302
M YSSMD LYCKTHF QLFK TGSFSK F P
Sbjct: 372286 MCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 372188
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0010C01
Length = 186185
Score = 74.8 bits (157), Expect(2) = 2e-024
Identities = 30/57 (52%), Positives = 32/57 (56%)
Frame = +3 / -1
Query: 45 ATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXY 215
A+ R P MSFTG KC CDK HFIDLLT YHKT HCKG S+ Y
Sbjct: 162245 ASIRTPAAMSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 162075
Score = 60.2 bits (125), Expect(2) = 2e-024
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +3 / -2
Query: 204 MXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFT 299
M YSSMD LYCKTHF QLFK TGSFSK F+
Sbjct: 161983 MCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 161888
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 71.6 bits (150), Expect(2) = 2e-024
Identities = 30/58 (51%), Positives = 31/58 (53%)
Frame = +3 / -1
Query: 33 CVRAATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSM 206
CV TMSFTG KCT CDK HFIDLLT YHKT HCKG S+
Sbjct: 132876 CVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSV 132703
Score = 63.4 bits (132), Expect(2) = 2e-024
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = +3 / -1
Query: 204 MXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFTP 302
M YSSMD LYCKTHF QLFK TGSFSK F P
Sbjct: 132588 MCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 132490
>dbj|AP004788.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0408D11, ***
SEQUENCING IN PROGRESS ***
Length = 138934
Score = 74.8 bits (157), Expect(2) = 2e-024
Identities = 30/57 (52%), Positives = 32/57 (56%)
Frame = +3 / +3
Query: 45 ATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXY 215
A+ R P MSFTG KC CDK HFIDLLT YHKT HCKG S+ Y
Sbjct: 77817 ASIRTPAAMSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 77987
Score = 60.2 bits (125), Expect(2) = 2e-024
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +3 / +1
Query: 204 MXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFT 299
M YSSMD LYCKTHF QLFK TGSFSK F+
Sbjct: 78079 MCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 78174
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
complete sequence
Length = 121056
Score = 71.6 bits (150), Expect(2) = 2e-024
Identities = 30/58 (51%), Positives = 31/58 (53%)
Frame = +3 / -3
Query: 33 CVRAATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSM 206
CV TMSFTG KCT CDK HFIDLLT YHKT HCKG S+
Sbjct: 35548 CVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSV 35375
Score = 63.4 bits (132), Expect(2) = 2e-024
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = +3 / -3
Query: 204 MXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFTP 302
M YSSMD LYCKTHF QLFK TGSFSK F P
Sbjct: 35260 MCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 35162
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G03
Length = 106401
Score = 74.8 bits (157), Expect(2) = 2e-024
Identities = 30/57 (52%), Positives = 32/57 (56%)
Frame = +3 / -3
Query: 45 ATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXY 215
A+ R P MSFTG KC CDK HFIDLLT YHKT HCKG S+ Y
Sbjct: 6175 ASIRTPAAMSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 6005
Score = 60.2 bits (125), Expect(2) = 2e-024
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +3 / -1
Query: 204 MXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFT 299
M YSSMD LYCKTHF QLFK TGSFSK F+
Sbjct: 5913 MCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 5818
>gb|AACV01005009.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005009, whole
genome shotgun sequence
Length = 78753
Score = 74.8 bits (157), Expect(2) = 2e-024
Identities = 30/57 (52%), Positives = 32/57 (56%)
Frame = +3 / +3
Query: 45 ATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXY 215
A+ R P MSFTG KC CDK HFIDLLT YHKT HCKG S+ Y
Sbjct: 76443 ASIRTPAAMSFTGTQDKCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSVCIY 76613
Score = 60.2 bits (125), Expect(2) = 2e-024
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = +3 / +1
Query: 204 MXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFT 299
M YSSMD LYCKTHF QLFK TGSFSK F+
Sbjct: 76705 MCNYSSMDGVLYCKTHFEQLFKETGSFSKKFS 76800
>gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010174, whole
genome shotgun sequence
Length = 20753
Score = 71.6 bits (150), Expect(2) = 2e-024
Identities = 30/58 (51%), Positives = 31/58 (53%)
Frame = +3 / +3
Query: 33 CVRAATDRXPGTMSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSM 206
CV TMSFTG KCT CDK HFIDLLT YHKT HCKG S+
Sbjct: 8157 CVVDRRQSSLATMSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSV 8330
Score = 63.4 bits (132), Expect(2) = 2e-024
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = +3 / +3
Query: 204 MXXYSSMDXXLYCKTHFXQLFKXTGSFSKNFTP 302
M YSSMD LYCKTHF QLFK TGSFSK F P
Sbjct: 8445 MCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAP 8543
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,469,393,885
Number of Sequences: 438736
Number of extensions: 12234195
Number of successful extensions: 135996
Number of sequences better than 1.0e-020: 20
length of database: 933,473,305
effective HSP length: 57
effective length of database: 908,465,353
effective search space used: 66317970769
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)