TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAS4f06.yg.3.1
(768 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP003917.3| Oryza sativa (japonica cultivar-group) geno... 151 6e-050
gb|AACV01018724.1| Oryza sativa (japonica cultivar-group) c... 151 6e-050
dbj|AK059493.1| Oryza sativa (japonica cultivar-group) cDNA... 151 6e-050
ref|XM_482962.1| Oryza sativa (japonica cultivar-group), mRNA 151 6e-050
gb|CA753820.1|CA753820 BR040003000_PLATE_B02_10_013.ab1 OA ... 151 6e-050
dbj|AK099412.1| Oryza sativa (japonica cultivar-group) cDNA... 151 6e-043
ref|XM_482963.1| Oryza sativa (japonica cultivar-group), mRNA 151 6e-043
gb|AU174109.1|AU174109 AU174109 Rice green shoot Oryza sati... 132 1e-040
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 151 1e-034
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 151 1e-034
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 151 1e-034
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 151 1e-034
gb|AU097187.1|AU097187 AU097187 Rice shoot Oryza sativa (ja... 113 2e-026
gb|AU174110.1|AU174110 AU174110 Rice green shoot Oryza sati... 111 3e-024
gb|D40663.1|D40663 RICS2759A Rice shoot Oryza sativa (japon... 73 4e-023
>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1666_A04
Length = 90097
Score = 151 bits (324), Expect(5) = 6e-050
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -1
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 48601 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 48422
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 48421 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 48329
Score = 102 bits (218), Expect(4) = 1e-034
Identities = 41/89 (46%), Positives = 60/89 (67%)
Frame = +1 / +1
Query: 265 AASNAFHSGGPQDDNPTNPVHSYPKASPATNSCWRNPISPKPGGSNHRTSYFCSPGYPAT 444
AAS+ FH+ PQ D+ N + SYPK + NS W N IS G S+H T++ S YPAT
Sbjct: 48331 AASDTFHTCSPQADSAPNAICSYPKGYHSPNSRWHNSISSNSGHSDHHTNHSYSSCYPAT 48510
Query: 445 NALDSHYLAIHSNYDSNNNPYHSRTPGAS 531
NAL+ ++ +IHS+++ +++PYHSR P A+
Sbjct: 48511 NALNPNHYSIHSHHNPDDDPYHSRVPDAT 48597
Score = 66.6 bits (139), Expect(4) = 7e-022
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = -1 / -2
Query: 453 EGIGGRVTGTAEIAGTVVGTTGFGRDGIAPAAVGGRASF 337
EGIGGRVTGT + G VVG G GRDGI PAAVGG +F
Sbjct: 48519 EGIGGRVTGTVGMVGMVVGMAGIGRDGIVPAAVGGMVTF 48403
Score = 45.1 bits (92), Expect(4) = 1e-034
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2 / +2
Query: 47 NTHAVIAMARGGSGCRXXXXXXXXTAFNGSFAARHLLDXXXXXXXXXXQPSIPAVPT 217
NT ++ SGC +AF+ S+AARHLLD P+ P++PT
Sbjct: 48149 NTQKQQSLTMASSGCHLLVLLLAFSAFHCSYAARHLLDTAAAAAAPEAAPAQPSMPT 48319
Score = 43.2 bits (88), Expect(5) = 6e-050
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3 / -1
Query: 169 SCCVQEMSSCKAAIEGSQD*EQGEKTATR 83
SCCVQ+M+SC AA+EG + EQ +K TR
Sbjct: 48271 SCCVQKMTSCVAAMEG*EGQEQNQKMTTR 48185
Score = 41.8 bits (85), Expect(4) = 7e-022
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -2 / -3
Query: 170 QLLCPRDVELQSCH*RQSRLGAGREDGNQ 84
QLLCP+D EL+SC+ R R GA ED NQ
Sbjct: 48272 QLLCPKDDELRSCNGRLRRPGAEPEDDNQ 48186
Score = 34.1 bits (68), Expect(4) = 1e-034
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1 / +1
Query: 532 IHRPIPTNHQPLKFDVAGDFSLHAVSQEFGSSYMVVFSVCAMFVLL 669
IH NH PLKF SQ FG +Y+ + SVC +L
Sbjct: 48604 IHVLTSQNH*PLKFFKRMRLIFMVTSQGFG*AYVAIISVCTFICVL 48741
Score = 34.1 bits (68), Expect(5) = 6e-050
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2 / -3
Query: 242 VWSALEAVWLEPLEWTAEQAWPL 174
VW EA WLE L W AE PL
Sbjct: 48353 VWKVSEAAWLELLAWRAELGLPL 48285
Score = 28.1 bits (55), Expect(4) = 7e-022
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / -1
Query: 268 QRQRGWNRWYG 236
+RQRGWN W+G
Sbjct: 48340 RRQRGWNCWHG 48308
Score = 25.8 bits (50), Expect(4) = 7e-022
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2 / -3
Query: 329 EWTGLVGLSSWGPPEWKALEAA 264
E L LS+WG WK EAA
Sbjct: 48395 EQMALGALSAWGLQVWKVSEAA 48330
Score = 24.4 bits (47), Expect(4) = 1e-034
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3 / +2
Query: 693 WCACDCSQSIVPLC 734
WC C CS ++V C
Sbjct: 48767 WCDCKCS*AVVLSC 48808
Score = 24.0 bits (46), Expect(5) = 6e-050
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2 / -3
Query: 650 HTLKTTIYDEPNS*LTACKEKSPATSNFKGWWF 552
HT Y PN *L NF+G WF
Sbjct: 48722 HTDMMATYA*PNP*LVTMNISLILLKNFRG*WF 48624
Score = 23.5 bits (45), Expect(5) = 6e-050
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1 / -2
Query: 573 ELQGLVVCGDGAVNG 529
ELQGLVV G +NG
Sbjct: 48645 ELQGLVVLGGEDMNG 48601
>gb|AACV01018724.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018724, whole
genome shotgun sequence
Length = 16142
Score = 151 bits (324), Expect(5) = 6e-050
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -1
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 2237 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 2058
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 2057 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 1965
Score = 102 bits (218), Expect(4) = 1e-034
Identities = 41/89 (46%), Positives = 60/89 (67%)
Frame = +1 / +2
Query: 265 AASNAFHSGGPQDDNPTNPVHSYPKASPATNSCWRNPISPKPGGSNHRTSYFCSPGYPAT 444
AAS+ FH+ PQ D+ N + SYPK + NS W N IS G S+H T++ S YPAT
Sbjct: 1967 AASDTFHTCSPQADSAPNAICSYPKGYHSPNSRWHNSISSNSGHSDHHTNHSYSSCYPAT 2146
Query: 445 NALDSHYLAIHSNYDSNNNPYHSRTPGAS 531
NAL+ ++ +IHS+++ +++PYHSR P A+
Sbjct: 2147 NALNPNHYSIHSHHNPDDDPYHSRVPDAT 2233
Score = 66.6 bits (139), Expect(4) = 7e-022
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = -1 / -2
Query: 453 EGIGGRVTGTAEIAGTVVGTTGFGRDGIAPAAVGGRASF 337
EGIGGRVTGT + G VVG G GRDGI PAAVGG +F
Sbjct: 2155 EGIGGRVTGTVGMVGMVVGMAGIGRDGIVPAAVGGMVTF 2039
Score = 45.1 bits (92), Expect(4) = 1e-034
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2 / +3
Query: 47 NTHAVIAMARGGSGCRXXXXXXXXTAFNGSFAARHLLDXXXXXXXXXXQPSIPAVPT 217
NT ++ SGC +AF+ S+AARHLLD P+ P++PT
Sbjct: 1785 NTQKQQSLTMASSGCHLLVLLLAFSAFHCSYAARHLLDTAAAAAAPEAAPAQPSMPT 1955
Score = 43.2 bits (88), Expect(5) = 6e-050
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3 / -1
Query: 169 SCCVQEMSSCKAAIEGSQD*EQGEKTATR 83
SCCVQ+M+SC AA+EG + EQ +K TR
Sbjct: 1907 SCCVQKMTSCVAAMEG*EGQEQNQKMTTR 1821
Score = 41.8 bits (85), Expect(4) = 7e-022
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -2 / -3
Query: 170 QLLCPRDVELQSCH*RQSRLGAGREDGNQ 84
QLLCP+D EL+SC+ R R GA ED NQ
Sbjct: 1908 QLLCPKDDELRSCNGRLRRPGAEPEDDNQ 1822
Score = 34.1 bits (68), Expect(5) = 6e-050
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2 / -3
Query: 242 VWSALEAVWLEPLEWTAEQAWPL 174
VW EA WLE L W AE PL
Sbjct: 1989 VWKVSEAAWLELLAWRAELGLPL 1921
Score = 34.1 bits (68), Expect(4) = 1e-034
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1 / +2
Query: 532 IHRPIPTNHQPLKFDVAGDFSLHAVSQEFGSSYMVVFSVCAMFVLL 669
IH NH PLKF SQ FG +Y+ + SVC +L
Sbjct: 2240 IHVLTSQNH*PLKFFKRMRLIFMVTSQGFG*AYVAIISVCTFICVL 2377
Score = 28.1 bits (55), Expect(4) = 7e-022
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / -1
Query: 268 QRQRGWNRWYG 236
+RQRGWN W+G
Sbjct: 1976 RRQRGWNCWHG 1944
Score = 25.8 bits (50), Expect(4) = 7e-022
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2 / -3
Query: 329 EWTGLVGLSSWGPPEWKALEAA 264
E L LS+WG WK EAA
Sbjct: 2031 EQMALGALSAWGLQVWKVSEAA 1966
Score = 24.4 bits (47), Expect(4) = 1e-034
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3 / +3
Query: 693 WCACDCSQSIVPLC 734
WC C CS ++V C
Sbjct: 2403 WCDCKCS*AVVLSC 2444
Score = 24.0 bits (46), Expect(5) = 6e-050
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2 / -3
Query: 650 HTLKTTIYDEPNS*LTACKEKSPATSNFKGWWF 552
HT Y PN *L NF+G WF
Sbjct: 2358 HTDMMATYA*PNP*LVTMNISLILLKNFRG*WF 2260
Score = 23.5 bits (45), Expect(5) = 6e-050
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1 / -2
Query: 573 ELQGLVVCGDGAVNG 529
ELQGLVV G +NG
Sbjct: 2281 ELQGLVVLGGEDMNG 2237
>dbj|AK059493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-H04, full
insert sequence
Length = 741
Score = 151 bits (324), Expect(5) = 6e-050
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -3
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 502 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 323
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 322 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 230
Score = 102 bits (218), Expect(4) = 1e-034
Identities = 41/89 (46%), Positives = 60/89 (67%)
Frame = +1 / +1
Query: 265 AASNAFHSGGPQDDNPTNPVHSYPKASPATNSCWRNPISPKPGGSNHRTSYFCSPGYPAT 444
AAS+ FH+ PQ D+ N + SYPK + NS W N IS G S+H T++ S YPAT
Sbjct: 232 AASDTFHTCSPQADSAPNAICSYPKGYHSPNSRWHNSISSNSGHSDHHTNHSYSSCYPAT 411
Query: 445 NALDSHYLAIHSNYDSNNNPYHSRTPGAS 531
NAL+ ++ +IHS+++ +++PYHSR P A+
Sbjct: 412 NALNPNHYSIHSHHNPDDDPYHSRVPDAT 498
Score = 66.6 bits (139), Expect(4) = 8e-022
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = -1 / -1
Query: 453 EGIGGRVTGTAEIAGTVVGTTGFGRDGIAPAAVGGRASF 337
EGIGGRVTGT + G VVG G GRDGI PAAVGG +F
Sbjct: 420 EGIGGRVTGTVGMVGMVVGMAGIGRDGIVPAAVGGMVTF 304
Score = 45.1 bits (92), Expect(4) = 1e-034
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2 / +2
Query: 47 NTHAVIAMARGGSGCRXXXXXXXXTAFNGSFAARHLLDXXXXXXXXXXQPSIPAVPT 217
NT ++ SGC +AF+ S+AARHLLD P+ P++PT
Sbjct: 50 NTQKQQSLTMASSGCHLLVLLLAFSAFHCSYAARHLLDTAAAAAAPEAAPAQPSMPT 220
Score = 43.2 bits (88), Expect(5) = 6e-050
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3 / -3
Query: 169 SCCVQEMSSCKAAIEGSQD*EQGEKTATR 83
SCCVQ+M+SC AA+EG + EQ +K TR
Sbjct: 172 SCCVQKMTSCVAAMEG*EGQEQNQKMTTR 86
Score = 41.8 bits (85), Expect(4) = 8e-022
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -2 / -2
Query: 170 QLLCPRDVELQSCH*RQSRLGAGREDGNQ 84
QLLCP+D EL+SC+ R R GA ED NQ
Sbjct: 173 QLLCPKDDELRSCNGRLRRPGAEPEDDNQ 87
Score = 34.1 bits (68), Expect(4) = 1e-034
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1 / +1
Query: 532 IHRPIPTNHQPLKFDVAGDFSLHAVSQEFGSSYMVVFSVCAMFVLL 669
IH NH PLKF SQ FG +Y+ + SVC +L
Sbjct: 505 IHVLTSQNH*PLKFFKRMRLIFMVTSQGFG*AYVAIISVCTFICVL 642
Score = 34.1 bits (68), Expect(5) = 6e-050
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2 / -2
Query: 242 VWSALEAVWLEPLEWTAEQAWPL 174
VW EA WLE L W AE PL
Sbjct: 254 VWKVSEAAWLELLAWRAELGLPL 186
Score = 28.1 bits (55), Expect(4) = 8e-022
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / -3
Query: 268 QRQRGWNRWYG 236
+RQRGWN W+G
Sbjct: 241 RRQRGWNCWHG 209
Score = 25.8 bits (50), Expect(4) = 8e-022
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2 / -2
Query: 329 EWTGLVGLSSWGPPEWKALEAA 264
E L LS+WG WK EAA
Sbjct: 296 EQMALGALSAWGLQVWKVSEAA 231
Score = 24.4 bits (47), Expect(4) = 1e-034
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3 / +2
Query: 693 WCACDCSQSIVPLC 734
WC C CS ++V C
Sbjct: 668 WCDCKCS*AVVLSC 709
Score = 24.0 bits (46), Expect(5) = 6e-050
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2 / -2
Query: 650 HTLKTTIYDEPNS*LTACKEKSPATSNFKGWWF 552
HT Y PN *L NF+G WF
Sbjct: 623 HTDMMATYA*PNP*LVTMNISLILLKNFRG*WF 525
Score = 23.5 bits (45), Expect(5) = 6e-050
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1 / -1
Query: 573 ELQGLVVCGDGAVNG 529
ELQGLVV G +NG
Sbjct: 546 ELQGLVVLGGEDMNG 502
>ref|XM_482962.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 741
Score = 151 bits (324), Expect(5) = 6e-050
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -3
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 502 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 323
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 322 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 230
Score = 102 bits (218), Expect(4) = 1e-034
Identities = 41/89 (46%), Positives = 60/89 (67%)
Frame = +1 / +1
Query: 265 AASNAFHSGGPQDDNPTNPVHSYPKASPATNSCWRNPISPKPGGSNHRTSYFCSPGYPAT 444
AAS+ FH+ PQ D+ N + SYPK + NS W N IS G S+H T++ S YPAT
Sbjct: 232 AASDTFHTCSPQADSAPNAICSYPKGYHSPNSRWHNSISSNSGHSDHHTNHSYSSCYPAT 411
Query: 445 NALDSHYLAIHSNYDSNNNPYHSRTPGAS 531
NAL+ ++ +IHS+++ +++PYHSR P A+
Sbjct: 412 NALNPNHYSIHSHHNPDDDPYHSRVPDAT 498
Score = 66.6 bits (139), Expect(4) = 8e-022
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = -1 / -1
Query: 453 EGIGGRVTGTAEIAGTVVGTTGFGRDGIAPAAVGGRASF 337
EGIGGRVTGT + G VVG G GRDGI PAAVGG +F
Sbjct: 420 EGIGGRVTGTVGMVGMVVGMAGIGRDGIVPAAVGGMVTF 304
Score = 45.1 bits (92), Expect(4) = 1e-034
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2 / +2
Query: 47 NTHAVIAMARGGSGCRXXXXXXXXTAFNGSFAARHLLDXXXXXXXXXXQPSIPAVPT 217
NT ++ SGC +AF+ S+AARHLLD P+ P++PT
Sbjct: 50 NTQKQQSLTMASSGCHLLVLLLAFSAFHCSYAARHLLDTAAAAAAPEAAPAQPSMPT 220
Score = 43.2 bits (88), Expect(5) = 6e-050
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3 / -3
Query: 169 SCCVQEMSSCKAAIEGSQD*EQGEKTATR 83
SCCVQ+M+SC AA+EG + EQ +K TR
Sbjct: 172 SCCVQKMTSCVAAMEG*EGQEQNQKMTTR 86
Score = 41.8 bits (85), Expect(4) = 8e-022
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -2 / -2
Query: 170 QLLCPRDVELQSCH*RQSRLGAGREDGNQ 84
QLLCP+D EL+SC+ R R GA ED NQ
Sbjct: 173 QLLCPKDDELRSCNGRLRRPGAEPEDDNQ 87
Score = 34.1 bits (68), Expect(4) = 1e-034
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1 / +1
Query: 532 IHRPIPTNHQPLKFDVAGDFSLHAVSQEFGSSYMVVFSVCAMFVLL 669
IH NH PLKF SQ FG +Y+ + SVC +L
Sbjct: 505 IHVLTSQNH*PLKFFKRMRLIFMVTSQGFG*AYVAIISVCTFICVL 642
Score = 34.1 bits (68), Expect(5) = 6e-050
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2 / -2
Query: 242 VWSALEAVWLEPLEWTAEQAWPL 174
VW EA WLE L W AE PL
Sbjct: 254 VWKVSEAAWLELLAWRAELGLPL 186
Score = 28.1 bits (55), Expect(4) = 8e-022
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / -3
Query: 268 QRQRGWNRWYG 236
+RQRGWN W+G
Sbjct: 241 RRQRGWNCWHG 209
Score = 25.8 bits (50), Expect(4) = 8e-022
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2 / -2
Query: 329 EWTGLVGLSSWGPPEWKALEAA 264
E L LS+WG WK EAA
Sbjct: 296 EQMALGALSAWGLQVWKVSEAA 231
Score = 24.4 bits (47), Expect(4) = 1e-034
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3 / +2
Query: 693 WCACDCSQSIVPLC 734
WC C CS ++V C
Sbjct: 668 WCDCKCS*AVVLSC 709
Score = 24.0 bits (46), Expect(5) = 6e-050
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2 / -2
Query: 650 HTLKTTIYDEPNS*LTACKEKSPATSNFKGWWF 552
HT Y PN *L NF+G WF
Sbjct: 623 HTDMMATYA*PNP*LVTMNISLILLKNFRG*WF 525
Score = 23.5 bits (45), Expect(5) = 6e-050
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1 / -1
Query: 573 ELQGLVVCGDGAVNG 529
ELQGLVV G +NG
Sbjct: 546 ELQGLVVLGGEDMNG 502
>gb|CA753820.1|CA753820 BR040003000_PLATE_B02_10_013.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040003000_PLATE_B02_10_013.ab1 similar to NP_197082.1|
(NM_121583) proline-rich protein [Arabidopsis thaliana]
gi|11358712|pir|T51407 proline-rich protein -
Arabidopsis thaliana gi|9755623|emb|CAC01777.1|
(AL391144) proline-rich protein [Arabidopsis thaliana],
mRNA sequence
Length = 623
Score = 151 bits (324), Expect(5) = 6e-050
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -3
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 471 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 292
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 291 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 199
Score = 102 bits (218), Expect(3) = 1e-032
Identities = 41/89 (46%), Positives = 60/89 (67%)
Frame = +1 / +3
Query: 265 AASNAFHSGGPQDDNPTNPVHSYPKASPATNSCWRNPISPKPGGSNHRTSYFCSPGYPAT 444
AAS+ FH+ PQ D+ N + SYPK + NS W N IS G S+H T++ S YPAT
Sbjct: 201 AASDTFHTCSPQADSAPNAICSYPKGYHSPNSRWHNSISSNSGHSDHHTNHSYSSCYPAT 380
Query: 445 NALDSHYLAIHSNYDSNNNPYHSRTPGAS 531
NAL+ ++ +IHS+++ +++PYHSR P A+
Sbjct: 381 NALNPNHYSIHSHHNPDDDPYHSRVPDAT 467
Score = 66.6 bits (139), Expect(4) = 9e-022
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = -1 / -1
Query: 453 EGIGGRVTGTAEIAGTVVGTTGFGRDGIAPAAVGGRASF 337
EGIGGRVTGT + G VVG G GRDGI PAAVGG +F
Sbjct: 389 EGIGGRVTGTVGMVGMVVGMAGIGRDGIVPAAVGGMVTF 273
Score = 45.1 bits (92), Expect(3) = 1e-032
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2 / +1
Query: 47 NTHAVIAMARGGSGCRXXXXXXXXTAFNGSFAARHLLDXXXXXXXXXXQPSIPAVPT 217
NT ++ SGC +AF+ S+AARHLLD P+ P++PT
Sbjct: 19 NTQKQQSLTMASSGCHLLVLLLAFSAFHCSYAARHLLDTAAAAAAPEAAPAQPSMPT 189
Score = 43.2 bits (88), Expect(5) = 6e-050
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3 / -3
Query: 169 SCCVQEMSSCKAAIEGSQD*EQGEKTATR 83
SCCVQ+M+SC AA+EG + EQ +K TR
Sbjct: 141 SCCVQKMTSCVAAMEG*EGQEQNQKMTTR 55
Score = 41.8 bits (85), Expect(4) = 9e-022
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -2 / -2
Query: 170 QLLCPRDVELQSCH*RQSRLGAGREDGNQ 84
QLLCP+D EL+SC+ R R GA ED NQ
Sbjct: 142 QLLCPKDDELRSCNGRLRRPGAEPEDDNQ 56
Score = 34.1 bits (68), Expect(3) = 1e-032
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1 / +3
Query: 532 IHRPIPTNHQPLKFDVAGDFSLHAVSQEFGSSYMVVFSVCAMFVLL 669
IH NH PLKF SQ FG +Y+ + SVC +L
Sbjct: 474 IHVLTSQNH*PLKFFKRMRLIFMVTSQGFG*AYVAIISVCTFICVL 611
Score = 34.1 bits (68), Expect(5) = 6e-050
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2 / -2
Query: 242 VWSALEAVWLEPLEWTAEQAWPL 174
VW EA WLE L W AE PL
Sbjct: 223 VWKVSEAAWLELLAWRAELGLPL 155
Score = 28.1 bits (55), Expect(4) = 9e-022
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / -3
Query: 268 QRQRGWNRWYG 236
+RQRGWN W+G
Sbjct: 210 RRQRGWNCWHG 178
Score = 25.8 bits (50), Expect(4) = 9e-022
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2 / -2
Query: 329 EWTGLVGLSSWGPPEWKALEAA 264
E L LS+WG WK EAA
Sbjct: 265 EQMALGALSAWGLQVWKVSEAA 200
Score = 24.0 bits (46), Expect(5) = 6e-050
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2 / -2
Query: 650 HTLKTTIYDEPNS*LTACKEKSPATSNFKGWWF 552
HT Y PN *L NF+G WF
Sbjct: 592 HTDMMATYA*PNP*LVTMNISLILLKNFRG*WF 494
Score = 23.5 bits (45), Expect(5) = 6e-050
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1 / -1
Query: 573 ELQGLVVCGDGAVNG 529
ELQGLVV G +NG
Sbjct: 515 ELQGLVVLGGEDMNG 471
>dbj|AK099412.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013004L21, full
insert sequence
Length = 659
Score = 151 bits (324), Expect(4) = 6e-043
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -1
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 425 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 246
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 245 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 153
Score = 102 bits (218), Expect(4) = 5e-028
Identities = 41/89 (46%), Positives = 60/89 (67%)
Frame = +1 / +2
Query: 265 AASNAFHSGGPQDDNPTNPVHSYPKASPATNSCWRNPISPKPGGSNHRTSYFCSPGYPAT 444
AAS+ FH+ PQ D+ N + SYPK + NS W N IS G S+H T++ S YPAT
Sbjct: 155 AASDTFHTCSPQADSAPNAICSYPKGYHSPNSRWHNSISSNSGHSDHHTNHSYSSCYPAT 334
Query: 445 NALDSHYLAIHSNYDSNNNPYHSRTPGAS 531
NAL+ ++ +IHS+++ +++PYHSR P A+
Sbjct: 335 NALNPNHYSIHSHHNPDDDPYHSRVPDAT 421
Score = 35.9 bits (72), Expect(4) = 6e-043
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3 / -1
Query: 241 YGRHWRQFGWNRWNGRLSRRG 179
YGR+ RQ GWN W+G L R G
Sbjct: 176 YGRYRRQRGWNCWHGGLRRPG 114
Score = 34.1 bits (68), Expect(4) = 5e-028
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1 / +2
Query: 532 IHRPIPTNHQPLKFDVAGDFSLHAVSQEFGSSYMVVFSVCAMFVLL 669
IH NH PLKF SQ FG +Y+ + SVC +L
Sbjct: 428 IHVLTSQNH*PLKFFKRMRLIFMVTSQGFG*AYVAIISVCTFICVL 565
Score = 24.4 bits (47), Expect(4) = 5e-028
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3 / +3
Query: 693 WCACDCSQSIVPLC 734
WC C CS ++V C
Sbjct: 591 WCDCKCS*AVVLSC 632
Score = 24.0 bits (46), Expect(4) = 6e-043
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2 / -3
Query: 650 HTLKTTIYDEPNS*LTACKEKSPATSNFKGWWF 552
HT Y PN *L NF+G WF
Sbjct: 546 HTDMMATYA*PNP*LVTMNISLILLKNFRG*WF 448
Score = 23.5 bits (45), Expect(4) = 6e-043
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1 / -2
Query: 573 ELQGLVVCGDGAVNG 529
ELQGLVV G +NG
Sbjct: 469 ELQGLVVLGGEDMNG 425
Score = 22.6 bits (43), Expect(4) = 5e-028
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / +3
Query: 191 QPSIPAVPTKL 223
QPS+P VPT L
Sbjct: 126 QPSMPTVPTTL 158
>ref|XM_482963.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 659
Score = 151 bits (324), Expect(4) = 6e-043
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -1
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 425 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 246
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 245 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 153
Score = 102 bits (218), Expect(4) = 5e-028
Identities = 41/89 (46%), Positives = 60/89 (67%)
Frame = +1 / +2
Query: 265 AASNAFHSGGPQDDNPTNPVHSYPKASPATNSCWRNPISPKPGGSNHRTSYFCSPGYPAT 444
AAS+ FH+ PQ D+ N + SYPK + NS W N IS G S+H T++ S YPAT
Sbjct: 155 AASDTFHTCSPQADSAPNAICSYPKGYHSPNSRWHNSISSNSGHSDHHTNHSYSSCYPAT 334
Query: 445 NALDSHYLAIHSNYDSNNNPYHSRTPGAS 531
NAL+ ++ +IHS+++ +++PYHSR P A+
Sbjct: 335 NALNPNHYSIHSHHNPDDDPYHSRVPDAT 421
Score = 35.9 bits (72), Expect(4) = 6e-043
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3 / -1
Query: 241 YGRHWRQFGWNRWNGRLSRRG 179
YGR+ RQ GWN W+G L R G
Sbjct: 176 YGRYRRQRGWNCWHGGLRRPG 114
Score = 34.1 bits (68), Expect(4) = 5e-028
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1 / +2
Query: 532 IHRPIPTNHQPLKFDVAGDFSLHAVSQEFGSSYMVVFSVCAMFVLL 669
IH NH PLKF SQ FG +Y+ + SVC +L
Sbjct: 428 IHVLTSQNH*PLKFFKRMRLIFMVTSQGFG*AYVAIISVCTFICVL 565
Score = 24.4 bits (47), Expect(4) = 5e-028
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3 / +3
Query: 693 WCACDCSQSIVPLC 734
WC C CS ++V C
Sbjct: 591 WCDCKCS*AVVLSC 632
Score = 24.0 bits (46), Expect(4) = 6e-043
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2 / -3
Query: 650 HTLKTTIYDEPNS*LTACKEKSPATSNFKGWWF 552
HT Y PN *L NF+G WF
Sbjct: 546 HTDMMATYA*PNP*LVTMNISLILLKNFRG*WF 448
Score = 23.5 bits (45), Expect(4) = 6e-043
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1 / -2
Query: 573 ELQGLVVCGDGAVNG 529
ELQGLVV G +NG
Sbjct: 469 ELQGLVVLGGEDMNG 425
Score = 22.6 bits (43), Expect(4) = 5e-028
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / +3
Query: 191 QPSIPAVPTKL 223
QPS+P VPT L
Sbjct: 126 QPSMPTVPTTL 158
>gb|AU174109.1|AU174109 AU174109 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16063, mRNA sequence
Length = 438
Score = 132 bits (282), Expect(3) = 1e-040
Identities = 45/72 (62%), Positives = 50/72 (69%)
Frame = -3 / -3
Query: 478 NGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSCWWQG*LWDRNGRDWWDCHL 299
NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS CW G LWDRN W C L
Sbjct: 436 NGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGCWGNGNLWDRNRWHWGHCQL 257
Query: 298 GDLRNGRHWRQR 263
GD R GR+ RQR
Sbjct: 256 GDCRYGRYRRQR 221
Score = 80.8 bits (170), Expect(2) = 3e-021
Identities = 34/72 (47%), Positives = 46/72 (63%)
Frame = +1 / +1
Query: 265 AASNAFHSGGPQDDNPTNPVHSYPKASPATNSCWRNPISPKPGGSNHRTSYFCSPGYPAT 444
AAS+ FH+ PQ D+ N + SYPK + NS W N IS G S+H T++ S YPAT
Sbjct: 223 AASDTFHTCSPQADSAPNAICSYPKGYHSPNSRWHNSISSNSGHSDHHTNHSYSSCYPAT 402
Query: 445 NALDSHYLAIHS 480
NAL+ ++ +IHS
Sbjct: 403 NALNPNHYSIHS 438
Score = 66.6 bits (139), Expect(4) = 9e-022
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = -1 / -1
Query: 453 EGIGGRVTGTAEIAGTVVGTTGFGRDGIAPAAVGGRASF 337
EGIGGRVTGT + G VVG G GRDGI PAAVGG +F
Sbjct: 411 EGIGGRVTGTVGMVGMVVGMAGIGRDGIVPAAVGGMVTF 295
Score = 45.1 bits (92), Expect(2) = 3e-021
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2 / +2
Query: 47 NTHAVIAMARGGSGCRXXXXXXXXTAFNGSFAARHLLDXXXXXXXXXXQPSIPAVPT 217
NT ++ SGC +AF+ S+AARHLLD P+ P++PT
Sbjct: 41 NTQKQQSLTMASSGCHLLVLLLAFSAFHCSYAARHLLDTAAAAAAPEAAPAQPSMPT 211
Score = 43.2 bits (88), Expect(3) = 1e-040
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3 / -3
Query: 169 SCCVQEMSSCKAAIEGSQD*EQGEKTATR 83
SCCVQ+M+SC AA+EG + EQ +K TR
Sbjct: 163 SCCVQKMTSCVAAMEG*EGQEQNQKMTTR 77
Score = 41.8 bits (85), Expect(4) = 9e-022
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -2 / -2
Query: 170 QLLCPRDVELQSCH*RQSRLGAGREDGNQ 84
QLLCP+D EL+SC+ R R GA ED NQ
Sbjct: 164 QLLCPKDDELRSCNGRLRRPGAEPEDDNQ 78
Score = 34.1 bits (68), Expect(3) = 1e-040
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2 / -2
Query: 242 VWSALEAVWLEPLEWTAEQAWPL 174
VW EA WLE L W AE PL
Sbjct: 245 VWKVSEAAWLELLAWRAELGLPL 177
Score = 28.1 bits (55), Expect(4) = 9e-022
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / -3
Query: 268 QRQRGWNRWYG 236
+RQRGWN W+G
Sbjct: 232 RRQRGWNCWHG 200
Score = 25.8 bits (50), Expect(4) = 9e-022
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2 / -2
Query: 329 EWTGLVGLSSWGPPEWKALEAA 264
E L LS+WG WK EAA
Sbjct: 287 EQMALGALSAWGLQVWKVSEAA 222
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 151 bits (324), Expect = 1e-034
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -3
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 23330739 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 23330560
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 23330559 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 23330467
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 151 bits (324), Expect = 1e-034
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -3
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 14772269 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 14772090
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 14772089 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 14771997
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 151 bits (324), Expect = 1e-034
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -3
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 22374275 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 22374096
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 22374095 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 22374003
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 151 bits (324), Expect = 1e-034
Identities = 54/91 (59%), Positives = 61/91 (67%)
Frame = -3 / -3
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 23568826 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 23568647
Query: 355 WWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W G LWDRN W C LGD R GR+ RQR
Sbjct: 23568646 WGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 23568554
>gb|AU097187.1|AU097187 AU097187 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2759, mRNA sequence
Length = 466
Score = 113 bits (242), Expect(3) = 2e-026
Identities = 38/64 (59%), Positives = 44/64 (68%)
Frame = -3 / -3
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 212 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 33
Query: 355 WWQG 344
W G
Sbjct: 32 WGNG 21
Score = 24.0 bits (46), Expect(3) = 2e-026
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2 / -2
Query: 650 HTLKTTIYDEPNS*LTACKEKSPATSNFKGWWF 552
HT Y PN *L NF+G WF
Sbjct: 333 HTDMMATYA*PNP*LVTMNISLILLKNFRG*WF 235
Score = 23.5 bits (45), Expect(3) = 2e-026
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1 / -1
Query: 573 ELQGLVVCGDGAVNG 529
ELQGLVV G +NG
Sbjct: 256 ELQGLVVLGGEDMNG 212
>gb|AU174110.1|AU174110 AU174110 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16063, mRNA sequence
Length = 449
Score = 111 bits (238), Expect(2) = 3e-024
Identities = 37/61 (60%), Positives = 43/61 (70%)
Frame = -3 / -3
Query: 535 EWRHLESGNGRDCCWNRSWNGWQGSGNRGHWWQGNRDCRNSWYGGWNHRVWERWDCASSC 356
+W HLE GNGRD + NGW + GHWWQGNR+CRN WYGG N R W+RW+CAS C
Sbjct: 189 DWWHLEPGNGRDRRRDCGGNGWNSGWD*GHWWQGNRNCRNGWYGGRNGRNWKRWNCASGC 10
Query: 355 W 353
W
Sbjct: 9 W 7
Score = 24.0 bits (46), Expect(2) = 3e-024
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2 / -2
Query: 650 HTLKTTIYDEPNS*LTACKEKSPATSNFKGWWF 552
HT Y PN *L NF+G WF
Sbjct: 310 HTDMMATYA*PNP*LVTMNISLILLXNFRG*WF 212
>gb|D40663.1|D40663 RICS2759A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 338
Score = 72.5 bits (152), Expect(3) = 4e-023
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = -3 / -1
Query: 385 WERWDCASSCWWQG*LWDRNGRDWWDCHLGDLRNGRHWRQR 263
W+RW+CAS CW G LWDRN W C LGD R GR+ RQR
Sbjct: 335 WKRWNCASGCWGNGNLWDRNRWHWGHCQLGDCRYGRYRRQR 213
Score = 43.2 bits (88), Expect(3) = 4e-023
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3 / -1
Query: 169 SCCVQEMSSCKAAIEGSQD*EQGEKTATR 83
SCCVQ+M+SC AA+EG + EQ +K TR
Sbjct: 155 SCCVQKMTSCVAAMEG*EGQEQNQKMTTR 69
Score = 34.1 bits (68), Expect(3) = 4e-023
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2 / -3
Query: 242 VWSALEAVWLEPLEWTAEQAWPL 174
VW EA WLE L W AE PL
Sbjct: 237 VWKVSEAAWLELLAWRAELGLPL 169
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,982,370,759
Number of Sequences: 438736
Number of extensions: 120606993
Number of successful extensions: 1027024
Number of sequences better than 1.0e-020: 20
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 177887224676
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)