TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635788.2.1
(753 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 152 1e-061
gb|AC124144.2| Oryza sativa (japonica cultivar-group) chrom... 152 1e-061
dbj|AK105598.1| Oryza sativa (japonica cultivar-group) cDNA... 152 1e-061
ref|XM_475645.1| Oryza sativa (japonica cultivar-group), p... 152 1e-061
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 92 2e-058
gb|AACV01010939.1| Oryza sativa (japonica cultivar-group) c... 92 2e-058
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 127 3e-042
dbj|AP002539.2| Oryza sativa (japonica cultivar-group) geno... 127 3e-042
dbj|AP002521.1| Oryza sativa (japonica cultivar-group) geno... 127 3e-042
ref|XM_550213.1| Oryza sativa (japonica cultivar-group), mRNA 127 4e-042
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 152 4e-035
dbj|AK108308.1| Oryza sativa (japonica cultivar-group) cDNA... 127 2e-034
gb|AQ872562.1|AQ872562 nbeb0051D10r CUGI Rice BAC Library (... 112 2e-030
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 127 1e-027
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 127 1e-027
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 98 9e-026
gb|AACV01000238.1| Oryza sativa (japonica cultivar-group) c... 98 1e-025
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 74 3e-022
ref|NT_107221.1| Oryza sativa (japonica cultivar-group) 74 3e-022
gb|AC124143.2| Oryza sativa (japonica cultivar-group) chrom... 74 3e-022
gb|AACV01012714.1| Oryza sativa (japonica cultivar-group) c... 74 3e-022
gb|CB651155.1|CB651155 OSJNEb16A06.f OSJNEb Oryza sativa (j... 107 1e-021
dbj|AK105603.1| Oryza sativa (japonica cultivar-group) cDNA... 107 1e-021
ref|NM_191933.1| Oryza sativa (japonica cultivar-group), p... 107 1e-021
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 107 1e-021
dbj|AP004194.3| Oryza sativa (japonica cultivar-group) geno... 107 1e-021
dbj|AP003760.4| Oryza sativa (japonica cultivar-group) geno... 107 1e-021
>ref|NT_107216.1| Oryza sativa (japonica cultivar-group)
Length = 2910826
Score = 152 bits (327), Expect(3) = 1e-061
Identities = 65/93 (69%), Positives = 73/93 (78%)
Frame = +1 / -2
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+GGLTVFAPPD+AF+ALP GTLN LSDQQKTSLVQFHVVSA LP AQ +TVSNPLRTQA
Sbjct: 2746584 SSGGLTVFAPPDNAFAALPTGTLNKLSDQQKTSLVQFHVVSALLPMAQFDTVSNPLRTQA 2746405
Query: 463 GDTGRGKYPLNLTADXXXXXXXXXXXXATLDAT 561
G+T GKYPLN+TA+ AT+D T
Sbjct: 2746404 GETAAGKYPLNVTAEGSRVNISTGVVNATVDNT 2746306
Score = 149 bits (320), Expect(2) = 6e-043
Identities = 62/75 (82%), Positives = 64/75 (85%)
Frame = -2 / +2
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGYLP VSPACVRSGLLTVS+CA GS+ADTTWNCTSDVFCWSE L VP GSA
Sbjct: 2746361 SAVTLSGYLPAAVSPACVRSGLLTVSNCAMGSSADTTWNCTSDVFCWSESLLRVPVGSAA 2746540
Query: 326 KALSGGANTVSPPLD 282
ALSGGANTVSPP D
Sbjct: 2746541 NALSGGANTVSPPED 2746585
Score = 87.2 bits (184), Expect(2) = 2e-030
Identities = 41/65 (63%), Positives = 46/65 (70%)
Frame = -1 / +1
Query: 561 RGVERGVDDPRGDVDAGAVRGEVERVLAPAGVASLRPQRVADXXXXXXXXXXGHDVELHQ 382
R V+ GVDD GDV AGA+ G+VERVLA G+A LRP+RVAD GHDVELHQ
Sbjct: 2746306 RVVDGGVDDAGGDVHAGALGGDVERVLAGGGLAGLRPERVADGVELRHGEQRGHDVELHQ 2746485
Query: 381 RRLLL 367
RRLLL
Sbjct: 2746486 RRLLL 2746500
Score = 75.3 bits (158), Expect(3) = 1e-061
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1 / -2
Query: 172 KTITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGG 294
KTITAIL+KAGQFTKFLQLLQST+ EQI NQ+KGK S+ G
Sbjct: 2746698 KTITAILTKAGQFTKFLQLLQSTQAGEQINNQIKGKASSSG 2746576
Score = 69.8 bits (146), Expect(2) = 2e-030
Identities = 30/54 (55%), Positives = 35/54 (64%)
Frame = -2 / +2
Query: 335 SAEKALSGGANTVSPPLDGLPLSWLVICSASRVDCSSWRNLVNCPALLRIAVMV 174
+A G P D PL WL+ICS + VDCSSWRNLVN PAL+RIAV+V
Sbjct: 2746535 AANALSGGANTVSPPEDDAFPLIWLLICSPACVDCSSWRNLVN*PALVRIAVIV 2746696
Score = 51.9 bits (107), Expect(3) = 1e-061
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1 / -2
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY+GDRLVVYQV KVLLPWALY
Sbjct: 2746305 LYSGDRLVVYQVDKVLLPWALY 2746240
Score = 49.2 bits (101), Expect(2) = 6e-043
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -1 / +1
Query: 633 AVERPRQQHLADLVDDEPVPGVKR 562
AVERPRQQHL DLVDDE V GV+R
Sbjct: 2746237 AVERPRQQHLVDLVDDEAVAGVER 2746308
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0099P06, complete sequence
Length = 135117
Score = 152 bits (327), Expect(3) = 1e-061
Identities = 65/93 (69%), Positives = 73/93 (78%)
Frame = +1 / -1
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+GGLTVFAPPD+AF+ALP GTLN LSDQQKTSLVQFHVVSA LP AQ +TVSNPLRTQA
Sbjct: 78543 SSGGLTVFAPPDNAFAALPTGTLNKLSDQQKTSLVQFHVVSALLPMAQFDTVSNPLRTQA 78364
Query: 463 GDTGRGKYPLNLTADXXXXXXXXXXXXATLDAT 561
G+T GKYPLN+TA+ AT+D T
Sbjct: 78363 GETAAGKYPLNVTAEGSRVNISTGVVNATVDNT 78265
Score = 149 bits (320), Expect(2) = 6e-043
Identities = 62/75 (82%), Positives = 64/75 (85%)
Frame = -2 / +2
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGYLP VSPACVRSGLLTVS+CA GS+ADTTWNCTSDVFCWSE L VP GSA
Sbjct: 78320 SAVTLSGYLPAAVSPACVRSGLLTVSNCAMGSSADTTWNCTSDVFCWSESLLRVPVGSAA 78499
Query: 326 KALSGGANTVSPPLD 282
ALSGGANTVSPP D
Sbjct: 78500 NALSGGANTVSPPED 78544
Score = 87.2 bits (184), Expect(2) = 2e-030
Identities = 41/65 (63%), Positives = 46/65 (70%)
Frame = -1 / +1
Query: 561 RGVERGVDDPRGDVDAGAVRGEVERVLAPAGVASLRPQRVADXXXXXXXXXXGHDVELHQ 382
R V+ GVDD GDV AGA+ G+VERVLA G+A LRP+RVAD GHDVELHQ
Sbjct: 78265 RVVDGGVDDAGGDVHAGALGGDVERVLAGGGLAGLRPERVADGVELRHGEQRGHDVELHQ 78444
Query: 381 RRLLL 367
RRLLL
Sbjct: 78445 RRLLL 78459
Score = 75.3 bits (158), Expect(3) = 1e-061
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1 / -1
Query: 172 KTITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGG 294
KTITAIL+KAGQFTKFLQLLQST+ EQI NQ+KGK S+ G
Sbjct: 78657 KTITAILTKAGQFTKFLQLLQSTQAGEQINNQIKGKASSSG 78535
Score = 69.8 bits (146), Expect(2) = 2e-030
Identities = 30/54 (55%), Positives = 35/54 (64%)
Frame = -2 / +2
Query: 335 SAEKALSGGANTVSPPLDGLPLSWLVICSASRVDCSSWRNLVNCPALLRIAVMV 174
+A G P D PL WL+ICS + VDCSSWRNLVN PAL+RIAV+V
Sbjct: 78494 AANALSGGANTVSPPEDDAFPLIWLLICSPACVDCSSWRNLVN*PALVRIAVIV 78655
Score = 51.9 bits (107), Expect(3) = 1e-061
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1 / -1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY+GDRLVVYQV KVLLPWALY
Sbjct: 78264 LYSGDRLVVYQVDKVLLPWALY 78199
Score = 49.2 bits (101), Expect(2) = 6e-043
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -1 / +1
Query: 633 AVERPRQQHLADLVDDEPVPGVKR 562
AVERPRQQHL DLVDDE V GV+R
Sbjct: 78196 AVERPRQQHLVDLVDDEAVAGVER 78267
>dbj|AK105598.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A03, full
insert sequence
Length = 1114
Score = 152 bits (327), Expect(3) = 1e-061
Identities = 65/93 (69%), Positives = 73/93 (78%)
Frame = +1 / +1
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+GGLTVFAPPD+AF+ALP GTLN LSDQQKTSLVQFHVVSA LP AQ +TVSNPLRTQA
Sbjct: 301 SSGGLTVFAPPDNAFAALPTGTLNKLSDQQKTSLVQFHVVSALLPMAQFDTVSNPLRTQA 480
Query: 463 GDTGRGKYPLNLTADXXXXXXXXXXXXATLDAT 561
G+T GKYPLN+TA+ AT+D T
Sbjct: 481 GETAAGKYPLNVTAEGSRVNISTGVVNATVDNT 579
Score = 149 bits (320), Expect(2) = 6e-043
Identities = 62/75 (82%), Positives = 64/75 (85%)
Frame = -2 / -3
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGYLP VSPACVRSGLLTVS+CA GS+ADTTWNCTSDVFCWSE L VP GSA
Sbjct: 524 SAVTLSGYLPAAVSPACVRSGLLTVSNCAMGSSADTTWNCTSDVFCWSESLLRVPVGSAA 345
Query: 326 KALSGGANTVSPPLD 282
ALSGGANTVSPP D
Sbjct: 344 NALSGGANTVSPPED 300
Score = 87.2 bits (184), Expect(2) = 2e-030
Identities = 41/65 (63%), Positives = 46/65 (70%)
Frame = -1 / -2
Query: 561 RGVERGVDDPRGDVDAGAVRGEVERVLAPAGVASLRPQRVADXXXXXXXXXXGHDVELHQ 382
R V+ GVDD GDV AGA+ G+VERVLA G+A LRP+RVAD GHDVELHQ
Sbjct: 579 RVVDGGVDDAGGDVHAGALGGDVERVLAGGGLAGLRPERVADGVELRHGEQRGHDVELHQ 400
Query: 381 RRLLL 367
RRLLL
Sbjct: 399 RRLLL 385
Score = 75.3 bits (158), Expect(3) = 1e-061
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1 / +1
Query: 172 KTITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGG 294
KTITAIL+KAGQFTKFLQLLQST+ EQI NQ+KGK S+ G
Sbjct: 187 KTITAILTKAGQFTKFLQLLQSTQAGEQINNQIKGKASSSG 309
Score = 69.8 bits (146), Expect(2) = 2e-030
Identities = 30/54 (55%), Positives = 35/54 (64%)
Frame = -2 / -3
Query: 335 SAEKALSGGANTVSPPLDGLPLSWLVICSASRVDCSSWRNLVNCPALLRIAVMV 174
+A G P D PL WL+ICS + VDCSSWRNLVN PAL+RIAV+V
Sbjct: 350 AANALSGGANTVSPPEDDAFPLIWLLICSPACVDCSSWRNLVN*PALVRIAVIV 189
Score = 51.9 bits (107), Expect(3) = 1e-061
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1 / +1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY+GDRLVVYQV KVLLPWALY
Sbjct: 580 LYSGDRLVVYQVDKVLLPWALY 645
Score = 49.2 bits (101), Expect(2) = 6e-043
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -1 / -2
Query: 633 AVERPRQQHLADLVDDEPVPGVKR 562
AVERPRQQHL DLVDDE V GV+R
Sbjct: 648 AVERPRQQHLVDLVDDEAVAGVER 577
>ref|XM_475645.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 798
Score = 152 bits (327), Expect(3) = 1e-061
Identities = 65/93 (69%), Positives = 73/93 (78%)
Frame = +1 / +1
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+GGLTVFAPPD+AF+ALP GTLN LSDQQKTSLVQFHVVSA LP AQ +TVSNPLRTQA
Sbjct: 238 SSGGLTVFAPPDNAFAALPTGTLNKLSDQQKTSLVQFHVVSALLPMAQFDTVSNPLRTQA 417
Query: 463 GDTGRGKYPLNLTADXXXXXXXXXXXXATLDAT 561
G+T GKYPLN+TA+ AT+D T
Sbjct: 418 GETAAGKYPLNVTAEGSRVNISTGVVNATVDNT 516
Score = 149 bits (320), Expect(2) = 6e-043
Identities = 62/75 (82%), Positives = 64/75 (85%)
Frame = -2 / -2
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGYLP VSPACVRSGLLTVS+CA GS+ADTTWNCTSDVFCWSE L VP GSA
Sbjct: 461 SAVTLSGYLPAAVSPACVRSGLLTVSNCAMGSSADTTWNCTSDVFCWSESLLRVPVGSAA 282
Query: 326 KALSGGANTVSPPLD 282
ALSGGANTVSPP D
Sbjct: 281 NALSGGANTVSPPED 237
Score = 87.2 bits (184), Expect(2) = 2e-030
Identities = 41/65 (63%), Positives = 46/65 (70%)
Frame = -1 / -1
Query: 561 RGVERGVDDPRGDVDAGAVRGEVERVLAPAGVASLRPQRVADXXXXXXXXXXGHDVELHQ 382
R V+ GVDD GDV AGA+ G+VERVLA G+A LRP+RVAD GHDVELHQ
Sbjct: 516 RVVDGGVDDAGGDVHAGALGGDVERVLAGGGLAGLRPERVADGVELRHGEQRGHDVELHQ 337
Query: 381 RRLLL 367
RRLLL
Sbjct: 336 RRLLL 322
Score = 75.3 bits (158), Expect(3) = 1e-061
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1 / +1
Query: 172 KTITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGG 294
KTITAIL+KAGQFTKFLQLLQST+ EQI NQ+KGK S+ G
Sbjct: 124 KTITAILTKAGQFTKFLQLLQSTQAGEQINNQIKGKASSSG 246
Score = 69.8 bits (146), Expect(2) = 2e-030
Identities = 30/54 (55%), Positives = 35/54 (64%)
Frame = -2 / -2
Query: 335 SAEKALSGGANTVSPPLDGLPLSWLVICSASRVDCSSWRNLVNCPALLRIAVMV 174
+A G P D PL WL+ICS + VDCSSWRNLVN PAL+RIAV+V
Sbjct: 287 AANALSGGANTVSPPEDDAFPLIWLLICSPACVDCSSWRNLVN*PALVRIAVIV 126
Score = 51.9 bits (107), Expect(3) = 1e-061
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1 / +1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY+GDRLVVYQV KVLLPWALY
Sbjct: 517 LYSGDRLVVYQVDKVLLPWALY 582
Score = 49.2 bits (101), Expect(2) = 6e-043
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -1 / -1
Query: 633 AVERPRQQHLADLVDDEPVPGVKR 562
AVERPRQQHL DLVDDE V GV+R
Sbjct: 585 AVERPRQQHLVDLVDDEAVAGVER 514
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 92.3 bits (195), Expect(4) = 2e-058
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = +1 / -3
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALP 417
S+GGLTVFAPPD+AF+ALP GTLN LSDQQKTSLVQFHVVS A P
Sbjct: 3651118 SSGGLTVFAPPDNAFAALPTGTLNKLSDQQKTSLVQFHVVSGAAP 3650984
Score = 91.3 bits (193), Expect(3) = 3e-039
Identities = 36/45 (80%), Positives = 37/45 (82%)
Frame = -2 / +3
Query: 416 GSAADTTWNCTSDVFCWSERELSVPAGSAEKALSGGANTVSPPLD 282
G+A DTTWNCTSDVFCWSE L VP GSA ALSGGANTVSPP D
Sbjct: 3650985 GAAPDTTWNCTSDVFCWSESLLRVPVGSAANALSGGANTVSPPED 3651119
Score = 75.3 bits (158), Expect(4) = 2e-058
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1 / -3
Query: 172 KTITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGG 294
KTITAIL+KAGQFTKFLQLLQST+ EQI NQ+KGK S+ G
Sbjct: 3651232 KTITAILTKAGQFTKFLQLLQSTQAGEQINNQIKGKASSSG 3651110
Score = 69.8 bits (146), Expect(3) = 1e-027
Identities = 30/54 (55%), Positives = 35/54 (64%)
Frame = -2 / +3
Query: 335 SAEKALSGGANTVSPPLDGLPLSWLVICSASRVDCSSWRNLVNCPALLRIAVMV 174
+A G P D PL WL+ICS + VDCSSWRNLVN PAL+RIAV+V
Sbjct: 3651069 AANALSGGANTVSPPEDDAFPLIWLLICSPACVDCSSWRNLVN*PALVRIAVIV 3651230
Score = 68.0 bits (142), Expect(4) = 2e-058
Identities = 29/52 (55%), Positives = 34/52 (65%)
Frame = +1 / -1
Query: 406 AALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATLDAT 561
A LP AQ +TVSNPLRTQAG+T GKYPLN+TA+ AT+D T
Sbjct: 3650994 ALLPMAQFDTVSNPLRTQAGETAAGKYPLNVTAEGSRVNISTGVVNATVDNT 3650839
Score = 65.7 bits (137), Expect(3) = 3e-039
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2 / +2
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAA 405
SAV LSGYLP VSPACVRSGLLTVS+CA GS+A
Sbjct: 3650894 SAVTLSGYLPAAVSPACVRSGLLTVSNCAMGSSA 3650995
Score = 63.8 bits (133), Expect(3) = 1e-027
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = -1 / +1
Query: 561 RGVERGVDDPRGDVDAGAVRGEVERVLAPAGVASLRPQRVAD 436
R V+ GVDD GDV AGA+ G+VERVLA G+A LRP+RVAD
Sbjct: 3650839 RVVDGGVDDAGGDVHAGALGGDVERVLAGGGLAGLRPERVAD 3650964
Score = 51.9 bits (107), Expect(4) = 2e-058
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1 / -1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY+GDRLVVYQV KVLLPWALY
Sbjct: 3650838 LYSGDRLVVYQVDKVLLPWALY 3650773
Score = 47.3 bits (97), Expect(3) = 3e-039
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1 / +1
Query: 633 AVERPRQQHLADLVDDEPVPGVKR 562
AV+RPRQQHL DLVDDE V GV+R
Sbjct: 3650770 AVKRPRQQHLVDLVDDEAVAGVER 3650841
Score = 31.3 bits (62), Expect(3) = 1e-027
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1 / +2
Query: 402 HDVELHQRRLLL 367
HDVELHQRRLLL
Sbjct: 3650999 HDVELHQRRLLL 3651034
>gb|AACV01010939.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010939, whole
genome shotgun sequence
Length = 15079
Score = 92.3 bits (195), Expect(4) = 2e-058
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = +1 / -2
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALP 417
S+GGLTVFAPPD+AF+ALP GTLN LSDQQKTSLVQFHVVS A P
Sbjct: 1443 SSGGLTVFAPPDNAFAALPTGTLNKLSDQQKTSLVQFHVVSGAAP 1309
Score = 91.3 bits (193), Expect(3) = 3e-039
Identities = 36/45 (80%), Positives = 37/45 (82%)
Frame = -2 / +2
Query: 416 GSAADTTWNCTSDVFCWSERELSVPAGSAEKALSGGANTVSPPLD 282
G+A DTTWNCTSDVFCWSE L VP GSA ALSGGANTVSPP D
Sbjct: 1310 GAAPDTTWNCTSDVFCWSESLLRVPVGSAANALSGGANTVSPPED 1444
Score = 75.3 bits (158), Expect(4) = 2e-058
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1 / -2
Query: 172 KTITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGG 294
KTITAIL+KAGQFTKFLQLLQST+ EQI NQ+KGK S+ G
Sbjct: 1557 KTITAILTKAGQFTKFLQLLQSTQAGEQINNQIKGKASSSG 1435
Score = 69.8 bits (146), Expect(3) = 1e-027
Identities = 30/54 (55%), Positives = 35/54 (64%)
Frame = -2 / +2
Query: 335 SAEKALSGGANTVSPPLDGLPLSWLVICSASRVDCSSWRNLVNCPALLRIAVMV 174
+A G P D PL WL+ICS + VDCSSWRNLVN PAL+RIAV+V
Sbjct: 1394 AANALSGGANTVSPPEDDAFPLIWLLICSPACVDCSSWRNLVN*PALVRIAVIV 1555
Score = 68.0 bits (142), Expect(4) = 2e-058
Identities = 29/52 (55%), Positives = 34/52 (65%)
Frame = +1 / -3
Query: 406 AALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATLDAT 561
A LP AQ +TVSNPLRTQAG+T GKYPLN+TA+ AT+D T
Sbjct: 1319 ALLPMAQFDTVSNPLRTQAGETAAGKYPLNVTAEGSRVNISTGVVNATVDNT 1164
Score = 65.7 bits (137), Expect(3) = 3e-039
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2 / +1
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAA 405
SAV LSGYLP VSPACVRSGLLTVS+CA GS+A
Sbjct: 1219 SAVTLSGYLPAAVSPACVRSGLLTVSNCAMGSSA 1320
Score = 63.8 bits (133), Expect(3) = 1e-027
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = -1 / +3
Query: 561 RGVERGVDDPRGDVDAGAVRGEVERVLAPAGVASLRPQRVAD 436
R V+ GVDD GDV AGA+ G+VERVLA G+A LRP+RVAD
Sbjct: 1164 RVVDGGVDDAGGDVHAGALGGDVERVLAGGGLAGLRPERVAD 1289
Score = 51.9 bits (107), Expect(4) = 2e-058
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1 / -3
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY+GDRLVVYQV KVLLPWALY
Sbjct: 1163 LYSGDRLVVYQVDKVLLPWALY 1098
Score = 47.3 bits (97), Expect(3) = 3e-039
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1 / +3
Query: 633 AVERPRQQHLADLVDDEPVPGVKR 562
AV+RPRQQHL DLVDDE V GV+R
Sbjct: 1095 AVKRPRQQHLVDLVDDEAVAGVER 1166
Score = 31.3 bits (62), Expect(3) = 1e-027
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1 / +1
Query: 402 HDVELHQRRLLL 367
HDVELHQRRLLL
Sbjct: 1324 HDVELHQRRLLL 1359
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 127 bits (272), Expect(3) = 3e-042
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +1 / -1
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S GLTVFAP D+AF++LP+GTLNSLSDQQK SLVQ+HV+S +P +Q +TVSNPLRTQA
Sbjct: 3094943 SRNGLTVFAPTDNAFTSLPSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQA 3094764
Query: 463 GDTGRGKYPLNLTAD 507
G G+YPLN+TA+
Sbjct: 3094763 GSNSPGQYPLNVTAE 3094719
Score = 116 bits (249), Expect(2) = 2e-030
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -2 / +1
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGY P + PACVRSGLLTVS+C G + D+TW CTS+ FCWS+ ELSVP GS
Sbjct: 3094720 SAVTLSGYCPGELLPACVRSGLLTVSNCDMGISVDSTWYCTSEFFCWSDSELSVPEGSDV 3094899
Query: 326 KALSGGANTVSP 291
ALS GANTVSP
Sbjct: 3094900 NALSVGANTVSP 3094935
Score = 44.1 bits (90), Expect(3) = 3e-042
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1 / -1
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
IT +L+KAGQF ++L++ST AEQI NQL
Sbjct: 3095042 ITGVLAKAGQFNTLIRLMRSTGAAEQIDNQL 3094950
Score = 42.8 bits (87), Expect(3) = 3e-042
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +1 / -1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY GD LVVYQV KVLLP A+Y
Sbjct: 3094664 LYTGDNLVVYQVDKVLLPMAIY 3094599
Score = 40.0 bits (81), Expect(2) = 2e-030
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -2 / +1
Query: 269 SWLVICSASRVDCSSWRNLVNCPALLRIAVM 177
SWL ICSA+ VD S +++NCPAL VM
Sbjct: 3094951 SWLSICSAAPVDRISLMSVLNCPALASTPVM 3095043
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0433F09
Length = 150150
Score = 127 bits (272), Expect(3) = 3e-042
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +1 / -1
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S GLTVFAP D+AF++LP+GTLNSLSDQQK SLVQ+HV+S +P +Q +TVSNPLRTQA
Sbjct: 65181 SRNGLTVFAPTDNAFTSLPSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQA 65002
Query: 463 GDTGRGKYPLNLTAD 507
G G+YPLN+TA+
Sbjct: 65001 GSNSPGQYPLNVTAE 64957
Score = 116 bits (249), Expect(2) = 2e-030
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -2 / +2
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGY P + PACVRSGLLTVS+C G + D+TW CTS+ FCWS+ ELSVP GS
Sbjct: 64958 SAVTLSGYCPGELLPACVRSGLLTVSNCDMGISVDSTWYCTSEFFCWSDSELSVPEGSDV 65137
Query: 326 KALSGGANTVSP 291
ALS GANTVSP
Sbjct: 65138 NALSVGANTVSP 65173
Score = 44.1 bits (90), Expect(3) = 3e-042
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1 / -1
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
IT +L+KAGQF ++L++ST AEQI NQL
Sbjct: 65280 ITGVLAKAGQFNTLIRLMRSTGAAEQIDNQL 65188
Score = 42.8 bits (87), Expect(3) = 3e-042
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +1 / -1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY GD LVVYQV KVLLP A+Y
Sbjct: 64902 LYTGDNLVVYQVDKVLLPMAIY 64837
Score = 40.0 bits (81), Expect(2) = 2e-030
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -2 / +2
Query: 269 SWLVICSASRVDCSSWRNLVNCPALLRIAVM 177
SWL ICSA+ VD S +++NCPAL VM
Sbjct: 65189 SWLSICSAAPVDRISLMSVLNCPALASTPVM 65281
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0041E11
Length = 146335
Score = 127 bits (272), Expect(3) = 3e-042
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +1 / -2
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S GLTVFAP D+AF++LP+GTLNSLSDQQK SLVQ+HV+S +P +Q +TVSNPLRTQA
Sbjct: 40929 SRNGLTVFAPTDNAFTSLPSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQA 40750
Query: 463 GDTGRGKYPLNLTAD 507
G G+YPLN+TA+
Sbjct: 40749 GSNSPGQYPLNVTAE 40705
Score = 116 bits (249), Expect(2) = 2e-030
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -2 / +2
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGY P + PACVRSGLLTVS+C G + D+TW CTS+ FCWS+ ELSVP GS
Sbjct: 40706 SAVTLSGYCPGELLPACVRSGLLTVSNCDMGISVDSTWYCTSEFFCWSDSELSVPEGSDV 40885
Query: 326 KALSGGANTVSP 291
ALS GANTVSP
Sbjct: 40886 NALSVGANTVSP 40921
Score = 44.1 bits (90), Expect(3) = 3e-042
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1 / -2
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
IT +L+KAGQF ++L++ST AEQI NQL
Sbjct: 41028 ITGVLAKAGQFNTLIRLMRSTGAAEQIDNQL 40936
Score = 42.8 bits (87), Expect(3) = 3e-042
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +1 / -2
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY GD LVVYQV KVLLP A+Y
Sbjct: 40650 LYTGDNLVVYQVDKVLLPMAIY 40585
Score = 40.0 bits (81), Expect(2) = 2e-030
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -2 / +2
Query: 269 SWLVICSASRVDCSSWRNLVNCPALLRIAVM 177
SWL ICSA+ VD S +++NCPAL VM
Sbjct: 40937 SWLSICSAAPVDRISLMSVLNCPALASTPVM 41029
>ref|XM_550213.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 810
Score = 127 bits (272), Expect(3) = 4e-042
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +1 / +1
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S GLTVFAP D+AF++LP+GTLNSLSDQQK SLVQ+HV+S +P +Q +TVSNPLRTQA
Sbjct: 262 SRNGLTVFAPTDNAFTSLPSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQA 441
Query: 463 GDTGRGKYPLNLTAD 507
G G+YPLN+TA+
Sbjct: 442 GSNSPGQYPLNVTAE 486
Score = 116 bits (249), Expect(2) = 2e-030
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -2 / -2
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGY P + PACVRSGLLTVS+C G + D+TW CTS+ FCWS+ ELSVP GS
Sbjct: 485 SAVTLSGYCPGELLPACVRSGLLTVSNCDMGISVDSTWYCTSEFFCWSDSELSVPEGSDV 306
Query: 326 KALSGGANTVSP 291
ALS GANTVSP
Sbjct: 305 NALSVGANTVSP 270
Score = 44.1 bits (90), Expect(3) = 4e-042
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1 / +1
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
IT +L+KAGQF ++L++ST AEQI NQL
Sbjct: 163 ITGVLAKAGQFNTLIRLMRSTGAAEQIDNQL 255
Score = 42.8 bits (87), Expect(3) = 4e-042
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +1 / +1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY GD LVVYQV KVLLP A+Y
Sbjct: 541 LYTGDNLVVYQVDKVLLPMAIY 606
Score = 40.0 bits (81), Expect(2) = 2e-030
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -2 / -2
Query: 269 SWLVICSASRVDCSSWRNLVNCPALLRIAVM 177
SWL ICSA+ VD S +++NCPAL VM
Sbjct: 254 SWLSICSAAPVDRISLMSVLNCPALASTPVM 162
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 152 bits (327), Expect = 4e-035
Identities = 65/93 (69%), Positives = 73/93 (78%)
Frame = +1 / -3
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+GGLTVFAPPD+AF+ALP GTLN LSDQQKTSLVQFHVVSA LP AQ +TVSNPLRTQA
Sbjct: 3656196 SSGGLTVFAPPDNAFAALPTGTLNKLSDQQKTSLVQFHVVSALLPMAQFDTVSNPLRTQA 3656017
Query: 463 GDTGRGKYPLNLTADXXXXXXXXXXXXATLDAT 561
G+T GKYPLN+TA+ AT+D T
Sbjct: 3656016 GETAAGKYPLNVTAEGSRVNISTGVVNATVDNT 3655918
Score = 149 bits (320), Expect = 3e-034
Identities = 62/75 (82%), Positives = 64/75 (85%)
Frame = -2 / +2
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGYLP VSPACVRSGLLTVS+CA GS+ADTTWNCTSDVFCWSE L VP GSA
Sbjct: 3655973 SAVTLSGYLPAAVSPACVRSGLLTVSNCAMGSSADTTWNCTSDVFCWSESLLRVPVGSAA 3656152
Query: 326 KALSGGANTVSPPLD 282
ALSGGANTVSPP D
Sbjct: 3656153 NALSGGANTVSPPED 3656197
>dbj|AK108308.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F08, full
insert sequence
Length = 746
Score = 127 bits (272), Expect(2) = 2e-034
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +1 / +2
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S GLTVFAP D+AF++LP+GTLNSLSDQQK SLVQ+HV+S +P +Q +TVSNPLRTQA
Sbjct: 20 SRNGLTVFAPTDNAFTSLPSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQA 199
Query: 463 GDTGRGKYPLNLTAD 507
G G+YPLN+TA+
Sbjct: 200 GSNSPGQYPLNVTAE 244
Score = 116 bits (249), Expect = 2e-024
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -2 / -3
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGY P + PACVRSGLLTVS+C G + D+TW CTS+ FCWS+ ELSVP GS
Sbjct: 243 SAVTLSGYCPGELLPACVRSGLLTVSNCDMGISVDSTWYCTSEFFCWSDSELSVPEGSDV 64
Query: 326 KALSGGANTVSP 291
ALS GANTVSP
Sbjct: 63 NALSVGANTVSP 28
Score = 42.8 bits (87), Expect(2) = 2e-034
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +1 / +2
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY GD LVVYQV KVLLP A+Y
Sbjct: 299 LYTGDNLVVYQVDKVLLPMAIY 364
>gb|AQ872562.1|AQ872562 nbeb0051D10r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0051D10r, DNA sequence
Length = 740
Score = 112 bits (239), Expect(2) = 2e-030
Identities = 47/70 (67%), Positives = 57/70 (81%)
Frame = +1 / +2
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S GLTVFAP D+AF++LP+GTLNSLSDQQK SLVQ+HV+S +P +Q +TV+NPLR QA
Sbjct: 431 SRNGLTVFAPTDNAFTSLPSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVNNPLRMQA 610
Query: 463 GDTGRGKYPL 492
G T RG PL
Sbjct: 611 GSTLRGIPPL 640
Score = 106 bits (226), Expect(2) = 2e-027
Identities = 43/66 (65%), Positives = 50/66 (75%)
Frame = -2 / -3
Query: 488 GYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAEKALSGG 309
G +P V PAC+RSGLLTVS+C G + D+TW CTS+ FCWS+ ELSVP GS ALS G
Sbjct: 636 GGMPRRVLPACIRSGLLTVSNCDMGISVDSTWYCTSEFFCWSDSELSVPEGSDVNALSVG 457
Query: 308 ANTVSP 291
ANTVSP
Sbjct: 456 ANTVSP 439
Score = 44.1 bits (90), Expect(2) = 2e-030
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1 / +2
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
IT +L+KAGQF ++L++ST AEQI NQL
Sbjct: 332 ITGVLAKAGQFNTLIRLMRSTGAAEQIDNQL 424
Score = 40.0 bits (81), Expect(2) = 2e-027
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -2 / -3
Query: 269 SWLVICSASRVDCSSWRNLVNCPALLRIAVM 177
SWL ICSA+ VD S +++NCPAL VM
Sbjct: 423 SWLSICSAAPVDRISLMSVLNCPALASTPVM 331
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 127 bits (272), Expect = 1e-027
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +1 / -2
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S GLTVFAP D+AF++LP+GTLNSLSDQQK SLVQ+HV+S +P +Q +TVSNPLRTQA
Sbjct: 3094943 SRNGLTVFAPTDNAFTSLPSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQA 3094764
Query: 463 GDTGRGKYPLNLTAD 507
G G+YPLN+TA+
Sbjct: 3094763 GSNSPGQYPLNVTAE 3094719
Score = 116 bits (249), Expect = 2e-024
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -2 / +1
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGY P + PACVRSGLLTVS+C G + D+TW CTS+ FCWS+ ELSVP GS
Sbjct: 3094720 SAVTLSGYCPGELLPACVRSGLLTVSNCDMGISVDSTWYCTSEFFCWSDSELSVPEGSDV 3094899
Query: 326 KALSGGANTVSP 291
ALS GANTVSP
Sbjct: 3094900 NALSVGANTVSP 3094935
Score = 107 bits (229), Expect = 1e-021
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +1 / -3
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNS 357
+TA+L K GQ+T F++L++ T++ Q+ +QL + G TVFAP D+AF+ L GTLNS
Sbjct: 27415714 VTAVLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNS 27415535
Query: 358 LSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDT 471
L+ QQ+ +LVQ HV+ +T SNP+RTQA T
Sbjct: 27415534 LTQQQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGT 27415421
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 127 bits (272), Expect = 1e-027
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +1 / -3
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S GLTVFAP D+AF++LP+GTLNSLSDQQK SLVQ+HV+S +P +Q +TVSNPLRTQA
Sbjct: 3097141 SRNGLTVFAPTDNAFTSLPSGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQA 3096962
Query: 463 GDTGRGKYPLNLTAD 507
G G+YPLN+TA+
Sbjct: 3096961 GSNSPGQYPLNVTAE 3096917
Score = 116 bits (249), Expect = 2e-024
Identities = 49/72 (68%), Positives = 55/72 (76%)
Frame = -2 / +3
Query: 506 SAVRLSGYLPLPVSPACVRSGLLTVSSCAAGSAADTTWNCTSDVFCWSERELSVPAGSAE 327
SAV LSGY P + PACVRSGLLTVS+C G + D+TW CTS+ FCWS+ ELSVP GS
Sbjct: 3096918 SAVTLSGYCPGELLPACVRSGLLTVSNCDMGISVDSTWYCTSEFFCWSDSELSVPEGSDV 3097097
Query: 326 KALSGGANTVSP 291
ALS GANTVSP
Sbjct: 3097098 NALSVGANTVSP 3097133
Score = 107 bits (229), Expect = 1e-021
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +1 / -3
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNS 357
+TA+L K GQ+T F++L++ T++ Q+ +QL + G TVFAP D+AF+ L GTLNS
Sbjct: 27335044 VTAVLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNS 27334865
Query: 358 LSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDT 471
L+ QQ+ +LVQ HV+ +T SNP+RTQA T
Sbjct: 27334864 LTQQQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGT 27334751
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 98.2 bits (208), Expect(2) = 9e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +1 / -1
Query: 337 PAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDTGRGKYPLNLTAD 507
P GTLNSLSDQQK SLVQ+HV+S +P +Q +TVSNPLRTQAG G+YPLN+TA+
Sbjct: 3169508 PLGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQAGSNSPGQYPLNVTAE 3169338
Score = 42.8 bits (87), Expect(2) = 9e-026
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +1 / -1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY GD LVVYQV KVLLP A+Y
Sbjct: 3169283 LYTGDNLVVYQVDKVLLPMAIY 3169218
>gb|AACV01000238.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000238, whole
genome shotgun sequence
Length = 20621
Score = 98.2 bits (208), Expect(2) = 1e-025
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = +1 / -1
Query: 337 PAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDTGRGKYPLNLTAD 507
P GTLNSLSDQQK SLVQ+HV+S +P +Q +TVSNPLRTQAG G+YPLN+TA+
Sbjct: 20606 PLGTLNSLSDQQKNSLVQYHVLSTLIPMSQFDTVSNPLRTQAGSNSPGQYPLNVTAE 20436
Score = 42.8 bits (87), Expect(2) = 1e-025
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +1 / -1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
LY GD LVVYQV KVLLP A+Y
Sbjct: 20381 LYTGDNLVVYQVDKVLLPMAIY 20316
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 73.9 bits (155), Expect(3) = 3e-022
Identities = 33/57 (57%), Positives = 38/57 (66%)
Frame = +1 / +2
Query: 292 GLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
G TVFAP D AFS+L GTLNSLS Q + SLVQ H+V +T SNP+RTQA
Sbjct: 10275950 GFTVFAPTDGAFSSLKPGTLNSLSAQDQVSLVQAHIVPKFYSMDAFDTASNPVRTQA 10276120
Score = 43.2 bits (88), Expect(3) = 3e-022
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +1 / +2
Query: 472 GRGKYPLNLTADXXXXXXXXXXXXATLDATPLYAGDRLVVYQVSKVLLPWALY 630
G G Y LN+TA T T L A L VY V KVLLP+AL+
Sbjct: 10276127 GDGPYTLNITATSTNQVNVSTGVVDTTLGTALRADQPLAVYSVDKVLLPYALF 10276285
Score = 29.5 bits (58), Expect(3) = 3e-022
Identities = 13/46 (28%), Positives = 16/46 (34%)
Frame = +3 / +1
Query: 135 GSVGAVPSPRAAQDHHGDPEQGRAVHQXXXXXXXXXXXXXXHQPAQ 272
G GA + GDP +GR VH QPA+
Sbjct: 10275799 GGAGAEGGGGGGAERDGDPGEGRVVHDVHPADEEHAAGHAAEQPAE 10275936
>ref|NT_107221.1| Oryza sativa (japonica cultivar-group)
Length = 824362
Score = 73.9 bits (155), Expect(3) = 3e-022
Identities = 33/57 (57%), Positives = 38/57 (66%)
Frame = +1 / +3
Query: 292 GLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
G TVFAP D AFS+L GTLNSLS Q + SLVQ H+V +T SNP+RTQA
Sbjct: 423426 GFTVFAPTDGAFSSLKPGTLNSLSAQDQVSLVQAHIVPKFYSMDAFDTASNPVRTQA 423596
Score = 43.2 bits (88), Expect(3) = 3e-022
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +1 / +3
Query: 472 GRGKYPLNLTADXXXXXXXXXXXXATLDATPLYAGDRLVVYQVSKVLLPWALY 630
G G Y LN+TA T T L A L VY V KVLLP+AL+
Sbjct: 423603 GDGPYTLNITATSTNQVNVSTGVVDTTLGTALRADQPLAVYSVDKVLLPYALF 423761
Score = 29.5 bits (58), Expect(3) = 3e-022
Identities = 13/46 (28%), Positives = 16/46 (34%)
Frame = +3 / +2
Query: 135 GSVGAVPSPRAAQDHHGDPEQGRAVHQXXXXXXXXXXXXXXHQPAQ 272
G GA + GDP +GR VH QPA+
Sbjct: 423275 GGAGAEGGGGGGAERDGDPGEGRVVHDVHPADEEHAAGHAAEQPAE 423412
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0053D02, complete sequence
Length = 157106
Score = 73.9 bits (155), Expect(3) = 3e-022
Identities = 33/57 (57%), Positives = 38/57 (66%)
Frame = +1 / +2
Query: 292 GLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
G TVFAP D AFS+L GTLNSLS Q + SLVQ H+V +T SNP+RTQA
Sbjct: 57713 GFTVFAPTDGAFSSLKPGTLNSLSAQDQVSLVQAHIVPKFYSMDAFDTASNPVRTQA 57883
Score = 43.2 bits (88), Expect(3) = 3e-022
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +1 / +2
Query: 472 GRGKYPLNLTADXXXXXXXXXXXXATLDATPLYAGDRLVVYQVSKVLLPWALY 630
G G Y LN+TA T T L A L VY V KVLLP+AL+
Sbjct: 57890 GDGPYTLNITATSTNQVNVSTGVVDTTLGTALRADQPLAVYSVDKVLLPYALF 58048
Score = 29.5 bits (58), Expect(3) = 3e-022
Identities = 13/46 (28%), Positives = 16/46 (34%)
Frame = +3 / +1
Query: 135 GSVGAVPSPRAAQDHHGDPEQGRAVHQXXXXXXXXXXXXXXHQPAQ 272
G GA + GDP +GR VH QPA+
Sbjct: 57562 GGAGAEGGGGGGAERDGDPGEGRVVHDVHPADEEHAAGHAAEQPAE 57699
>gb|AACV01012714.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012714, whole
genome shotgun sequence
Length = 22278
Score = 73.9 bits (155), Expect(3) = 3e-022
Identities = 33/57 (57%), Positives = 38/57 (66%)
Frame = +1 / +3
Query: 292 GLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
G TVFAP D AFS+L GTLNSLS Q + SLVQ H+V +T SNP+RTQA
Sbjct: 19329 GFTVFAPTDGAFSSLKPGTLNSLSAQDQVSLVQAHIVPKFYSMDAFDTASNPVRTQA 19499
Score = 43.2 bits (88), Expect(3) = 3e-022
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +1 / +3
Query: 472 GRGKYPLNLTADXXXXXXXXXXXXATLDATPLYAGDRLVVYQVSKVLLPWALY 630
G G Y LN+TA T T L A L VY V KVLLP+AL+
Sbjct: 19506 GDGPYTLNITATSTNQVNVSTGVVDTTLGTALRADQPLAVYSVDKVLLPYALF 19664
Score = 29.5 bits (58), Expect(3) = 3e-022
Identities = 13/46 (28%), Positives = 16/46 (34%)
Frame = +3 / +2
Query: 135 GSVGAVPSPRAAQDHHGDPEQGRAVHQXXXXXXXXXXXXXXHQPAQ 272
G GA + GDP +GR VH QPA+
Sbjct: 19178 GGAGAEGGGGGGAERDGDPGEGRVVHDVHPADEEHAAGHAAEQPAE 19315
>gb|CB651155.1|CB651155 OSJNEb16A06.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16A06 5', mRNA sequence
Length = 729
Score = 107 bits (229), Expect = 1e-021
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +1 / +2
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNS 357
+TA+L K GQ+T F++L++ T++ Q+ +QL + G TVFAP D+AF+ L GTLNS
Sbjct: 146 VTAVLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNS 325
Query: 358 LSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDT 471
L+ QQ+ +LVQ HV+ +T SNP+RTQA T
Sbjct: 326 LTQQQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGT 439
>dbj|AK105603.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A09, full
insert sequence
Length = 1040
Score = 107 bits (229), Expect = 1e-021
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +1 / +3
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNS 357
+TA+L K GQ+T F++L++ T++ Q+ +QL + G TVFAP D+AF+ L GTLNS
Sbjct: 165 VTAVLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNS 344
Query: 358 LSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDT 471
L+ QQ+ +LVQ HV+ +T SNP+RTQA T
Sbjct: 345 LTQQQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGT 458
>ref|NM_191933.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 801
Score = 107 bits (229), Expect = 1e-021
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +1 / +1
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNS 357
+TA+L K GQ+T F++L++ T++ Q+ +QL + G TVFAP D+AF+ L GTLNS
Sbjct: 112 VTAVLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNS 291
Query: 358 LSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDT 471
L+ QQ+ +LVQ HV+ +T SNP+RTQA T
Sbjct: 292 LTQQQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGT 405
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 107 bits (229), Expect = 1e-021
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +1 / -3
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNS 357
+TA+L K GQ+T F++L++ T++ Q+ +QL + G TVFAP D+AF+ L GTLNS
Sbjct: 1863097 VTAVLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNS 1862918
Query: 358 LSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDT 471
L+ QQ+ +LVQ HV+ +T SNP+RTQA T
Sbjct: 1862917 LTQQQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGT 1862804
>dbj|AP004194.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0014E08
Length = 144219
Score = 107 bits (229), Expect = 1e-021
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +1 / -2
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNS 357
+TA+L K GQ+T F++L++ T++ Q+ +QL + G TVFAP D+AF+ L GTLNS
Sbjct: 17939 VTAVLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNS 17760
Query: 358 LSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDT 471
L+ QQ+ +LVQ HV+ +T SNP+RTQA T
Sbjct: 17759 LTQQQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGT 17646
>dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBb0063G05
Length = 182681
Score = 107 bits (229), Expect = 1e-021
Identities = 45/98 (45%), Positives = 65/98 (66%)
Frame = +1 / -2
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNS 357
+TA+L K GQ+T F++L++ T++ Q+ +QL + G TVFAP D+AF+ L GTLNS
Sbjct: 115561 VTAVLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNS 115382
Query: 358 LSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDT 471
L+ QQ+ +LVQ HV+ +T SNP+RTQA T
Sbjct: 115381 LTQQQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGT 115268
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,997,194,989
Number of Sequences: 438736
Number of extensions: 20468721
Number of successful extensions: 145414
Number of sequences better than 1.0e-020: 33
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 173349285271
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)