TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635646.2.1
(573 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK063693.1| Oryza sativa (japonica cultivar-group) cDNA... 138 5e-031
dbj|AP004341.2| Oryza sativa (japonica cultivar-group) geno... 138 5e-031
gb|AACV01016819.1| Oryza sativa (japonica cultivar-group) c... 138 5e-031
ref|XM_479191.1| Oryza sativa (japonica cultivar-group), mRNA 138 5e-031
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 138 5e-031
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 138 5e-031
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 138 5e-031
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 138 5e-031
>dbj|AK063693.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F11, full
insert sequence
Length = 709
Score = 138 bits (296), Expect = 5e-031
Identities = 54/89 (60%), Positives = 69/89 (77%)
Frame = +2 / +3
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDW ALVAAT+A+G + A+GAA EGSA+RR+H ALLE+H++
Sbjct: 240 GMLPKIDWPALVAATQALGLPELLPEAPPTDAELSAEGAAADEGSALRRLHRALLEIHIE 419
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPDT RCFPI++G+PNM+LHEDEV
Sbjct: 420 EGALVCPDTDRCFPISRGVPNMLLHEDEV 506
Score = 107 bits (228), Expect = 1e-021
Identities = 54/89 (60%), Positives = 57/89 (64%)
Frame = -1 / -1
Query: 267 TSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIXXXX 88
TSSSW MLG PL MGKQR VSGQTR PS SRSA W RR ALPS++AAPSA+
Sbjct: 505 TSSSWRSMLGTPLEMGKQRSVSGQTRAPSSMWISRSARWRRRSALPSSAAAPSAESSASV 326
Query: 87 XXXXXXXXXRPTARVAATSARQSILGRRP 1
RP A VAATSA QSILG P
Sbjct: 325 GGASGRSSGRPRAWVAATSAGQSILGSMP 239
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0524E08
Length = 154696
Score = 138 bits (296), Expect = 5e-031
Identities = 54/89 (60%), Positives = 69/89 (77%)
Frame = +2 / -2
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDW ALVAAT+A+G + A+GAA EGSA+RR+H ALLE+H++
Sbjct: 38574 GMLPKIDWPALVAATQALGLPELLPEAPPTDAELSAEGAAADEGSALRRLHRALLEIHIE 38395
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPDT RCFPI++G+PNM+LHEDEV
Sbjct: 38394 EGALVCPDTDRCFPISRGVPNMLLHEDEV 38308
Score = 107 bits (228), Expect = 1e-021
Identities = 54/89 (60%), Positives = 57/89 (64%)
Frame = -1 / +2
Query: 267 TSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIXXXX 88
TSSSW MLG PL MGKQR VSGQTR PS SRSA W RR ALPS++AAPSA+
Sbjct: 38309 TSSSWRSMLGTPLEMGKQRSVSGQTRAPSSMWISRSARWRRRSALPSSAAAPSAESSASV 38488
Query: 87 XXXXXXXXXRPTARVAATSARQSILGRRP 1
RP A VAATSA QSILG P
Sbjct: 38489 GGASGRSSGRPRAWVAATSAGQSILGSMP 38575
>gb|AACV01016819.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016819, whole
genome shotgun sequence
Length = 47105
Score = 138 bits (296), Expect = 5e-031
Identities = 54/89 (60%), Positives = 69/89 (77%)
Frame = +2 / +3
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDW ALVAAT+A+G + A+GAA EGSA+RR+H ALLE+H++
Sbjct: 26754 GMLPKIDWPALVAATQALGLPELLPEAPPTDAELSAEGAAADEGSALRRLHRALLEIHIE 26933
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPDT RCFPI++G+PNM+LHEDEV
Sbjct: 26934 EGALVCPDTDRCFPISRGVPNMLLHEDEV 27020
Score = 107 bits (228), Expect = 1e-021
Identities = 54/89 (60%), Positives = 57/89 (64%)
Frame = -1 / -2
Query: 267 TSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIXXXX 88
TSSSW MLG PL MGKQR VSGQTR PS SRSA W RR ALPS++AAPSA+
Sbjct: 27019 TSSSWRSMLGTPLEMGKQRSVSGQTRAPSSMWISRSARWRRRSALPSSAAAPSAESSASV 26840
Query: 87 XXXXXXXXXRPTARVAATSARQSILGRRP 1
RP A VAATSA QSILG P
Sbjct: 26839 GGASGRSSGRPRAWVAATSAGQSILGSMP 26753
>ref|XM_479191.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 709
Score = 138 bits (296), Expect = 5e-031
Identities = 54/89 (60%), Positives = 69/89 (77%)
Frame = +2 / +3
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDW ALVAAT+A+G + A+GAA EGSA+RR+H ALLE+H++
Sbjct: 240 GMLPKIDWPALVAATQALGLPELLPEAPPTDAELSAEGAAADEGSALRRLHRALLEIHIE 419
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPDT RCFPI++G+PNM+LHEDEV
Sbjct: 420 EGALVCPDTDRCFPISRGVPNMLLHEDEV 506
Score = 107 bits (228), Expect = 1e-021
Identities = 54/89 (60%), Positives = 57/89 (64%)
Frame = -1 / -1
Query: 267 TSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIXXXX 88
TSSSW MLG PL MGKQR VSGQTR PS SRSA W RR ALPS++AAPSA+
Sbjct: 505 TSSSWRSMLGTPLEMGKQRSVSGQTRAPSSMWISRSARWRRRSALPSSAAAPSAESSASV 326
Query: 87 XXXXXXXXXRPTARVAATSARQSILGRRP 1
RP A VAATSA QSILG P
Sbjct: 325 GGASGRSSGRPRAWVAATSAGQSILGSMP 239
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 138 bits (296), Expect = 5e-031
Identities = 54/89 (60%), Positives = 69/89 (77%)
Frame = +2 / -2
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDW ALVAAT+A+G + A+GAA EGSA+RR+H ALLE+H++
Sbjct: 13334417 GMLPKIDWPALVAATQALGLPELLPEAPPTDAELSAEGAAADEGSALRRLHRALLEIHIE 13334238
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPDT RCFPI++G+PNM+LHEDEV
Sbjct: 13334237 EGALVCPDTDRCFPISRGVPNMLLHEDEV 13334151
Score = 107 bits (228), Expect = 1e-021
Identities = 54/89 (60%), Positives = 57/89 (64%)
Frame = -1 / +1
Query: 267 TSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIXXXX 88
TSSSW MLG PL MGKQR VSGQTR PS SRSA W RR ALPS++AAPSA+
Sbjct: 13334152 TSSSWRSMLGTPLEMGKQRSVSGQTRAPSSMWISRSARWRRRSALPSSAAAPSAESSASV 13334331
Query: 87 XXXXXXXXXRPTARVAATSARQSILGRRP 1
RP A VAATSA QSILG P
Sbjct: 13334332 GGASGRSSGRPRAWVAATSAGQSILGSMP 13334418
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 138 bits (296), Expect = 5e-031
Identities = 54/89 (60%), Positives = 69/89 (77%)
Frame = +2 / -3
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDW ALVAAT+A+G + A+GAA EGSA+RR+H ALLE+H++
Sbjct: 11179033 GMLPKIDWPALVAATQALGLPELLPEAPPTDAELSAEGAAADEGSALRRLHRALLEIHIE 11178854
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPDT RCFPI++G+PNM+LHEDEV
Sbjct: 11178853 EGALVCPDTDRCFPISRGVPNMLLHEDEV 11178767
Score = 107 bits (228), Expect = 1e-021
Identities = 54/89 (60%), Positives = 57/89 (64%)
Frame = -1 / +3
Query: 267 TSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIXXXX 88
TSSSW MLG PL MGKQR VSGQTR PS SRSA W RR ALPS++AAPSA+
Sbjct: 11178768 TSSSWRSMLGTPLEMGKQRSVSGQTRAPSSMWISRSARWRRRSALPSSAAAPSAESSASV 11178947
Query: 87 XXXXXXXXXRPTARVAATSARQSILGRRP 1
RP A VAATSA QSILG P
Sbjct: 11178948 GGASGRSSGRPRAWVAATSAGQSILGSMP 11179034
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 138 bits (296), Expect = 5e-031
Identities = 54/89 (60%), Positives = 69/89 (77%)
Frame = +2 / -3
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDW ALVAAT+A+G + A+GAA EGSA+RR+H ALLE+H++
Sbjct: 24578472 GMLPKIDWPALVAATQALGLPELLPEAPPTDAELSAEGAAADEGSALRRLHRALLEIHIE 24578293
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPDT RCFPI++G+PNM+LHEDEV
Sbjct: 24578292 EGALVCPDTDRCFPISRGVPNMLLHEDEV 24578206
Score = 107 bits (228), Expect = 1e-021
Identities = 54/89 (60%), Positives = 57/89 (64%)
Frame = -1 / +2
Query: 267 TSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIXXXX 88
TSSSW MLG PL MGKQR VSGQTR PS SRSA W RR ALPS++AAPSA+
Sbjct: 24578207 TSSSWRSMLGTPLEMGKQRSVSGQTRAPSSMWISRSARWRRRSALPSSAAAPSAESSASV 24578386
Query: 87 XXXXXXXXXRPTARVAATSARQSILGRRP 1
RP A VAATSA QSILG P
Sbjct: 24578387 GGASGRSSGRPRAWVAATSAGQSILGSMP 24578473
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 138 bits (296), Expect = 5e-031
Identities = 54/89 (60%), Positives = 69/89 (77%)
Frame = +2 / -3
Query: 2 GLLPKIDWRALVAATRAVGXXXXXXXXXXXXXXIFADGAADVEGSAIRRIHHALLEVHVQ 181
G+LPKIDW ALVAAT+A+G + A+GAA EGSA+RR+H ALLE+H++
Sbjct: 25721412 GMLPKIDWPALVAATQALGLPELLPEAPPTDAELSAEGAAADEGSALRRLHRALLEIHIE 25721233
Query: 182 EGSLVCPDTSRCFPINKGIPNMMLHEDEV 268
EG+LVCPDT RCFPI++G+PNM+LHEDEV
Sbjct: 25721232 EGALVCPDTDRCFPISRGVPNMLLHEDEV 25721146
Score = 107 bits (228), Expect = 1e-021
Identities = 54/89 (60%), Positives = 57/89 (64%)
Frame = -1 / +2
Query: 267 TSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIXXXX 88
TSSSW MLG PL MGKQR VSGQTR PS SRSA W RR ALPS++AAPSA+
Sbjct: 25721147 TSSSWRSMLGTPLEMGKQRSVSGQTRAPSSMWISRSARWRRRSALPSSAAAPSAESSASV 25721326
Query: 87 XXXXXXXXXRPTARVAATSARQSILGRRP 1
RP A VAATSA QSILG P
Sbjct: 25721327 GGASGRSSGRPRAWVAATSAGQSILGSMP 25721413
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,735,673,160
Number of Sequences: 438736
Number of extensions: 39219977
Number of successful extensions: 209683
Number of sequences better than 1.0e-020: 11
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 119859513444
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)