TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB685021.1|CB685021 OSJNEf15B15.f OSJNEf Oryza sativa (j... 136 9e-036
dbj|AK071855.1| Oryza sativa (japonica cultivar-group) cDNA... 136 1e-035
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 136 2e-035
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 136 2e-035
dbj|AP004277.1| Oryza sativa (japonica cultivar-group) chro... 136 2e-035
dbj|AP005395.3| Oryza sativa (japonica cultivar-group) geno... 136 2e-035
gb|AACV01014829.1| Oryza sativa (japonica cultivar-group) c... 136 2e-035
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 136 3e-030
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 136 3e-030
gb|CX728180.1|CX728180 OSJNEf01E20.r OSJNEf Oryza sativa (j... 130 1e-028
>gb|CB685021.1|CB685021 OSJNEf15B15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15B15 5', mRNA sequence
Length = 730
Score = 136 bits (291), Expect(3) = 9e-036
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3 / +3
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS RDDPEAKRRRRVAAYNVFATQGR+K+TVRSS KW+KSKFSD+RYGGL*
Sbjct: 237 AAKSYSFNGPSARDDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYGGL* 416
Query: 379 TD 374
TD
Sbjct: 417 TD 422
Score = 116 bits (248), Expect(2) = 1e-029
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = +3 / -1
Query: 375 SVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
SVQRPP*R SENLDL HL LLRTV L PCVANTLYAATRRRRFASGSSR LGPLKLYD
Sbjct: 421 SVQRPP*RMSENLDLIHLKLLRTVDLSLPCVANTLYAATRRRRFASGSSRALGPLKLYD 245
Score = 37.7 bits (76), Expect(2) = 1e-029
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3 / -1
Query: 615 YADECSCGTDLHFSM 659
YA ECSCGTDLHFS+
Sbjct: 178 YAAECSCGTDLHFSI 134
Score = 37.3 bits (75), Expect(3) = 9e-036
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEHS+A
Sbjct: 132 TMEKCRSVPHEHSAA 176
Score = 21.7 bits (41), Expect(3) = 9e-036
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1 / +2
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQAK 238
H Y+ M Y+ YI L+AC AK
Sbjct: 443 HIYIYMIIYLSMYVYCYIYDTDLHACIAK 529
>dbj|AK071855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115P14, full
insert sequence
Length = 773
Score = 136 bits (291), Expect(3) = 1e-035
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3 / +1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS RDDPEAKRRRRVAAYNVFATQGR+K+TVRSS KW+KSKFSD+RYGGL*
Sbjct: 256 AAKSYSFNGPSARDDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYGGL* 435
Query: 379 TD 374
TD
Sbjct: 436 TD 441
Score = 116 bits (248), Expect(2) = 1e-029
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = +3 / -1
Query: 375 SVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
SVQRPP*R SENLDL HL LLRTV L PCVANTLYAATRRRRFASGSSR LGPLKLYD
Sbjct: 440 SVQRPP*RMSENLDLIHLKLLRTVDLSLPCVANTLYAATRRRRFASGSSRALGPLKLYD 264
Score = 37.7 bits (76), Expect(2) = 1e-029
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3 / -1
Query: 615 YADECSCGTDLHFSM 659
YA ECSCGTDLHFS+
Sbjct: 197 YAAECSCGTDLHFSI 153
Score = 37.3 bits (75), Expect(3) = 1e-035
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEHS+A
Sbjct: 151 TMEKCRSVPHEHSAA 195
Score = 21.7 bits (41), Expect(3) = 1e-035
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1 / +3
Query: 324 HTYMCMHEPWCSYICNYICTRKLYACQAK 238
H Y+ M Y+ YI L+AC AK
Sbjct: 462 HIYIYMIIYLSMYVYCYIYDTDLHACIAK 548
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 136 bits (291), Expect(2) = 2e-035
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3 / -2
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS RDDPEAKRRRRVAAYNVFATQGR+K+TVRSS KW+KSKFSD+RYGGL*
Sbjct: 9649792 AAKSYSFNGPSARDDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYGGL* 9649613
Query: 379 TD 374
TD
Sbjct: 9649612 TD 9649607
Score = 116 bits (248), Expect(2) = 9e-030
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = +3 / +3
Query: 375 SVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
SVQRPP*R SENLDL HL LLRTV L PCVANTLYAATRRRRFASGSSR LGPLKLYD
Sbjct: 9649608 SVQRPP*RMSENLDLIHLKLLRTVDLSLPCVANTLYAATRRRRFASGSSRALGPLKLYD 9649784
Score = 37.7 bits (76), Expect(2) = 9e-030
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3 / +3
Query: 615 YADECSCGTDLHFSM 659
YA ECSCGTDLHFS+
Sbjct: 9649851 YAAECSCGTDLHFSI 9649895
Score = 37.3 bits (75), Expect(2) = 2e-035
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -2
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEHS+A
Sbjct: 9649897 TMEKCRSVPHEHSAA 9649853
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 136 bits (291), Expect(2) = 2e-035
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3 / -2
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS RDDPEAKRRRRVAAYNVFATQGR+K+TVRSS KW+KSKFSD+RYGGL*
Sbjct: 5711482 AAKSYSFNGPSARDDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYGGL* 5711303
Query: 379 TD 374
TD
Sbjct: 5711302 TD 5711297
Score = 116 bits (248), Expect(2) = 9e-030
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = +3 / +3
Query: 375 SVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
SVQRPP*R SENLDL HL LLRTV L PCVANTLYAATRRRRFASGSSR LGPLKLYD
Sbjct: 5711298 SVQRPP*RMSENLDLIHLKLLRTVDLSLPCVANTLYAATRRRRFASGSSRALGPLKLYD 5711474
Score = 37.7 bits (76), Expect(2) = 9e-030
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3 / +3
Query: 615 YADECSCGTDLHFSM 659
YA ECSCGTDLHFS+
Sbjct: 5711541 YAAECSCGTDLHFSI 5711585
Score = 37.3 bits (75), Expect(2) = 2e-035
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -2
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEHS+A
Sbjct: 5711587 TMEKCRSVPHEHSAA 5711543
>dbj|AP004277.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0462F09, ***
SEQUENCING IN PROGRESS ***
Length = 161012
Score = 136 bits (291), Expect(2) = 2e-035
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3 / -1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS RDDPEAKRRRRVAAYNVFATQGR+K+TVRSS KW+KSKFSD+RYGGL*
Sbjct: 144644 AAKSYSFNGPSARDDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYGGL* 144465
Query: 379 TD 374
TD
Sbjct: 144464 TD 144459
Score = 116 bits (248), Expect(2) = 9e-030
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = +3 / +1
Query: 375 SVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
SVQRPP*R SENLDL HL LLRTV L PCVANTLYAATRRRRFASGSSR LGPLKLYD
Sbjct: 144460 SVQRPP*RMSENLDLIHLKLLRTVDLSLPCVANTLYAATRRRRFASGSSRALGPLKLYD 144636
Score = 37.7 bits (76), Expect(2) = 9e-030
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3 / +1
Query: 615 YADECSCGTDLHFSM 659
YA ECSCGTDLHFS+
Sbjct: 144703 YAAECSCGTDLHFSI 144747
Score = 37.3 bits (75), Expect(2) = 2e-035
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -1
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEHS+A
Sbjct: 144749 TMEKCRSVPHEHSAA 144705
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0623A10
Length = 156517
Score = 136 bits (291), Expect(2) = 2e-035
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3 / -1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS RDDPEAKRRRRVAAYNVFATQGR+K+TVRSS KW+KSKFSD+RYGGL*
Sbjct: 44026 AAKSYSFNGPSARDDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYGGL* 43847
Query: 379 TD 374
TD
Sbjct: 43846 TD 43841
Score = 116 bits (248), Expect(2) = 9e-030
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = +3 / +3
Query: 375 SVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
SVQRPP*R SENLDL HL LLRTV L PCVANTLYAATRRRRFASGSSR LGPLKLYD
Sbjct: 43842 SVQRPP*RMSENLDLIHLKLLRTVDLSLPCVANTLYAATRRRRFASGSSRALGPLKLYD 44018
Score = 37.7 bits (76), Expect(2) = 9e-030
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3 / +3
Query: 615 YADECSCGTDLHFSM 659
YA ECSCGTDLHFS+
Sbjct: 44085 YAAECSCGTDLHFSI 44129
Score = 37.3 bits (75), Expect(2) = 2e-035
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -1
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEHS+A
Sbjct: 44131 TMEKCRSVPHEHSAA 44087
>gb|AACV01014829.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014829, whole
genome shotgun sequence
Length = 72225
Score = 136 bits (291), Expect(2) = 2e-035
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3 / -1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS RDDPEAKRRRRVAAYNVFATQGR+K+TVRSS KW+KSKFSD+RYGGL*
Sbjct: 15342 AAKSYSFNGPSARDDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYGGL* 15163
Query: 379 TD 374
TD
Sbjct: 15162 TD 15157
Score = 116 bits (248), Expect(2) = 9e-030
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = +3 / +2
Query: 375 SVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
SVQRPP*R SENLDL HL LLRTV L PCVANTLYAATRRRRFASGSSR LGPLKLYD
Sbjct: 15158 SVQRPP*RMSENLDLIHLKLLRTVDLSLPCVANTLYAATRRRRFASGSSRALGPLKLYD 15334
Score = 37.7 bits (76), Expect(2) = 9e-030
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3 / +2
Query: 615 YADECSCGTDLHFSM 659
YA ECSCGTDLHFS+
Sbjct: 15401 YAAECSCGTDLHFSI 15445
Score = 37.3 bits (75), Expect(2) = 2e-035
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -1
Query: 661 SMEKCRSVPHEHSSA 617
+MEKCRSVPHEHS+A
Sbjct: 15447 TMEKCRSVPHEHSAA 15403
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 136 bits (291), Expect = 3e-030
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3 / -1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS RDDPEAKRRRRVAAYNVFATQGR+K+TVRSS KW+KSKFSD+RYGGL*
Sbjct: 27348529 AAKSYSFNGPSARDDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYGGL* 27348350
Query: 379 TD 374
TD
Sbjct: 27348349 TD 27348344
Score = 116 bits (248), Expect = 3e-024
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = +3 / +3
Query: 375 SVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
SVQRPP*R SENLDL HL LLRTV L PCVANTLYAATRRRRFASGSSR LGPLKLYD
Sbjct: 27348345 SVQRPP*RMSENLDLIHLKLLRTVDLSLPCVANTLYAATRRRRFASGSSRALGPLKLYD 27348521
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 136 bits (291), Expect = 3e-030
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = -3 / -3
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A KSYSFNGPS RDDPEAKRRRRVAAYNVFATQGR+K+TVRSS KW+KSKFSD+RYGGL*
Sbjct: 28245997 AAKSYSFNGPSARDDPEAKRRRRVAAYNVFATQGRLKSTVRSSFKWIKSKFSDIRYGGL* 28245818
Query: 379 TD 374
TD
Sbjct: 28245817 TD 28245812
Score = 116 bits (248), Expect = 3e-024
Identities = 52/59 (88%), Positives = 52/59 (88%)
Frame = +3 / +3
Query: 375 SVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
SVQRPP*R SENLDL HL LLRTV L PCVANTLYAATRRRRFASGSSR LGPLKLYD
Sbjct: 28245813 SVQRPP*RMSENLDLIHLKLLRTVDLSLPCVANTLYAATRRRRFASGSSRALGPLKLYD 28245989
>gb|CX728180.1|CX728180 OSJNEf01E20.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf01E20 3', mRNA sequence
Length = 579
Score = 130 bits (279), Expect = 1e-028
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = -3 / -1
Query: 559 AGKSYSFNGPSGRDDPEAKRRRRVAAYNVFATQGRIKTTVRSSVKWLKSKFSDVRYGGL* 380
A K YSFNGPS RDDPEAKRRRRVAAYNVFATQGR+K+ VRSS KW+KSKFSD+RYGGL*
Sbjct: 540 AAKLYSFNGPSARDDPEAKRRRRVAAYNVFATQGRLKSPVRSSFKWIKSKFSDIRYGGL* 361
Query: 379 TD 374
TD
Sbjct: 360 TD 355
Score = 111 bits (236), Expect = 1e-022
Identities = 50/59 (84%), Positives = 51/59 (86%)
Frame = +3 / +2
Query: 375 SVQRPP*RTSENLDLSHLTLLRTVVLIRPCVANTLYAATRRRRFASGSSRPLGPLKLYD 551
SVQRPP*R SENLDL HL LLRT L PCVANTLYAATRRRRFASGSSR LGPLKLY+
Sbjct: 356 SVQRPP*RMSENLDLIHLKLLRTGDLSLPCVANTLYAATRRRRFASGSSRALGPLKLYN 532
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,002,410,023
Number of Sequences: 438736
Number of extensions: 61341295
Number of successful extensions: 646053
Number of sequences better than 1.0e-020: 14
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 153382351889
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)