TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4790360.2.1
(667 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK110688.1| Oryza sativa (japonica cultivar-group) cDNA... 234 1e-060
gb|AACV01013060.1| Oryza sativa (japonica cultivar-group) c... 124 2e-049
dbj|AP007223.2| Oryza sativa (japonica cultivar-group) geno... 124 9e-048
dbj|AP004239.1| Oryza sativa (japonica cultivar-group) chro... 124 1e-047
dbj|AP004844.1| Oryza sativa (japonica cultivar-group) chro... 124 1e-047
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 124 2e-044
gb|AU055721.1|AU055721 AU055721 Oryza sativa mature leaf Ni... 157 9e-037
dbj|AK063280.1| Oryza sativa (japonica cultivar-group) cDNA... 125 4e-027
dbj|AK063319.1| Oryza sativa (japonica cultivar-group) cDNA... 125 4e-027
ref|XM_476102.1| Oryza sativa (japonica cultivar-group), p... 125 4e-027
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 124 1e-026
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 124 1e-026
>dbj|AK110688.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A01, full
insert sequence
Length = 1543
Score = 234 bits (506), Expect(2) = 1e-060
Identities = 90/112 (80%), Positives = 95/112 (84%)
Frame = +2 / +2
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNH 181
+EPQSFLLGS+YFLHAYGPIY RNNSFRMFSNEDVTIGSWMLAMNVNH
Sbjct: 818 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFSNEDVTIGSWMLAMNVNH 997
Query: 182 ENTHALCEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAE 337
ENTHALC P+CTESSIAVWDIPKCSGLCHPEVKMLELH RKECTGGP+ +E
Sbjct: 998 ENTHALCSPECTESSIAVWDIPKCSGLCHPEVKMLELHRRKECTGGPSAVSE 1153
Score = 198 bits (426), Expect = 7e-049
Identities = 87/115 (75%), Positives = 90/115 (78%)
Frame = -2 / -2
Query: 345 SDTSAATVGPPVHXXXXXXXXXXXSGWHRPEHFGMSQTAIEDSVQSGSQSACVFSWLTFI 166
S S GPPVH SGWH PEHFG+SQTAIEDSV SG QSACVFSWLTFI
Sbjct: 1161 SSDSDTADGPPVHSFLR*SSSIFTSGWHSPEHFGISQTAIEDSVHSGEQSACVFSWLTFI 982
Query: 165 ASIHDPIVTSSLLNIRKLLFRNATKLATTSADKA*IGPYA*RKYCDPSKKDWGSW 1
ASI DPIVTSSLLNIRKLLF ATKLATTSADKA*+GPYA*RKY DPSKKD GS+
Sbjct: 981 ASIQDPIVTSSLLNIRKLLFLKATKLATTSADKA*MGPYA*RKYSDPSKKDCGSY 817
Score = 187 bits (403), Expect = 1e-045
Identities = 78/109 (71%), Positives = 88/109 (80%)
Frame = +1 / +1
Query: 4 *APILFTRITILPSCIWANLCFIS*RGG*LGCIAKQQFPYVQQRGRYNWIVDACYERQP* 183
*A ILF RI ILPSCIWA+L FIS GG LGC+ +QQFPYVQQ G Y WI+DACYERQP*
Sbjct: 820 *ATILFARIRILPSCIWAHLRFISRCGGKLGCLEEQQFPYVQQ*GCYYWILDACYERQP* 999
Query: 184 EHTCTL*T*LHGVFNCCLGHPKMLRSMPPRGKNARAP*KKRMHRWSNCG 330
EHTCTL T*+H VFNCCLG+ KM R+MPP GK+A A K+ M+RWS CG
Sbjct: 1000 EHTCTLFT*VHRVFNCCLGYSKMFRAMPPGGKDAGASSKEGMYRWSICG 1146
Score = 179 bits (386), Expect = 2e-043
Identities = 77/107 (71%), Positives = 86/107 (80%)
Frame = -1 / -1
Query: 322 WTTCAFFSFMEL*HFYLWVA*T*AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNC 143
WTTC F M+L H YL VA* * FW++PNSN*RL A+R TKCMCVLMVDVHSKHP SN
Sbjct: 1138 WTTCTFLPSMKLQHLYLRVA*P*TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNS 959
Query: 142 NVLVAEHTETVVSQCNQASHHVS**SINWPICMKEVL*SE*KGLGLM 2
N+L+AEHTETVV Q NQA HH+ **S+N PICMKEV *SE KGL L+
Sbjct: 958 NILIAEHTETVVPQGNQACHHIG**SVNGPICMKEVF*SEQKGLWLI 818
Score = 176 bits (378), Expect = 3e-042
Identities = 80/114 (70%), Positives = 87/114 (76%)
Frame = -3 / -3
Query: 344 RTPQLPQLDHLCILFFHGALAFLPLGGIDLSILGCPKQQLKTPCSQVHKVHVCSHG*RS* 165
R Q PQ+DHL I F A A LP GGI L+IL PKQQLKT C+QV+KVHVCSHG*RS*
Sbjct: 1160 RQIQTPQMDHLYIPSFDEAPASLPPGGIALNILEYPKQQLKTLCTQVNKVHVCSHG*RS* 981
Query: 164 QASTIQL*RPRC*TYGNCCFAMQPS*PPRQLIKHKLAHMHEGSIVIRVKRIGAH 3
QAS IQ * P C*TYGNCC + QPS PP +LIK K AHMHEGSI+IR KRI AH
Sbjct: 980 QASRIQ**HPHC*TYGNCCSSRQPSLPPHRLIKRKWAHMHEGSILIRAKRIVAH 819
Score = 173 bits (373), Expect = 1e-041
Identities = 76/108 (70%), Positives = 84/108 (77%)
Frame = +3 / +3
Query: 3 MSPNPFYSDHNTSFMHMGQFMLYQLTWWLAWLHCETTVSVCSATRTLQLDRGCLL*TSTM 182
MS NPF SD NTSFMHMG F LYQ WW AWL TTVSVCSA R L LD GCLL*TSTM
Sbjct: 819 MSHNPFCSDQNTSFMHMGPFTLYQPMWWQAWLP*GTTVSVCSAMRMLLLDPGCLL*TSTM 998
Query: 183 RTHMHFVNLTARSLQLLFGTSQNAQVYATQR*KC*SSMKEKNAQVVQL 326
RTHMHFV+L+A+SLQLLFG QN Q YAT+R*+C S ++ +N QVV L
Sbjct: 999 RTHMHFVHLSAQSLQLLFGIFQNVQGYATRR*RCWSFIEGRNVQVVHL 1142
Score = 23.1 bits (44), Expect(2) = 1e-060
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / +2
Query: 431 SIHLIHQAQSL 463
SIH +HQAQSL
Sbjct: 1250 SIH*LHQAQSL 1282
>gb|AACV01013060.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013060, whole
genome shotgun sequence
Length = 20070
Score = 124 bits (265), Expect(3) = 2e-049
Identities = 47/50 (94%), Positives = 49/50 (98%)
Frame = +2 / -2
Query: 110 NSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
+SFRMFSNEDVTIGSWMLAMNVNHENTHALC P+CTESSIAVWDIPKCSG
Sbjct: 7928 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 7779
Score = 107 bits (228), Expect(3) = 7e-039
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -2 / +1
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFG+SQTAIEDSV SG QSACVFSWLTFIASI DPIVTSSLLNIRKL
Sbjct: 7780 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIRKL 7926
Score = 100 bits (213), Expect(3) = 2e-033
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +1 / -1
Query: 112 QFPYVQQRGRYNWIVDACYERQP*EHTCTL*T*LHGVFNCCLGHPKMLR 258
QFPYVQQ G Y WI+DACYERQP*EHTCTL T*+H VFNCCLG+ KM R
Sbjct: 7926 QFPYVQQ*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFR 7780
Score = 99.1 bits (210), Expect(3) = 4e-033
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = -1 / +3
Query: 259 T*AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTET 113
T* FW++PNSN*RL A+R TKCMCVLMVDVHSKHP SN N+L+AEHTET
Sbjct: 7779 T*TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTET 7925
Score = 88.6 bits (187), Expect(3) = 4e-027
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +3 / -3
Query: 114 VSVCSATRTLQLDRGCLL*TSTMRTHMHFVNLTARSLQLLFGTSQNAQV 260
VSVCSA R L LD GCLL*TSTMRTHMHFV+L+A+SLQLLFG QN QV
Sbjct: 7924 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLFGIFQNVQV 7778
Score = 85.8 bits (181), Expect(3) = 8e-026
Identities = 38/49 (77%), Positives = 42/49 (85%)
Frame = -3 / +2
Query: 260 DLSILGCPKQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGN 114
+L+IL PKQQLKT C+QV+KVHVCSHG*RS*QAS IQ * P C*TYGN
Sbjct: 7778 NLNILEYPKQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGN 7924
Score = 74.8 bits (157), Expect(3) = 7e-039
Identities = 33/41 (80%), Positives = 35/41 (85%)
Frame = -2 / +2
Query: 123 IRKLLFRNATKLATTSADKA*IGPYA*RKYCDPSKKDWGSW 1
+ LLF ATKLATTSADKA*IGPYA*RKY DPSKKD GS+
Sbjct: 8513 VNYLLFLKATKLATTSADKA*IGPYA*RKYSDPSKKDCGSY 8635
Score = 64.8 bits (135), Expect(3) = 2e-049
Identities = 26/37 (70%), Positives = 26/37 (70%)
Frame = +3 / -2
Query: 3 MSPNPFYSDHNTSFMHMGQFMLYQLTWWLAWLHCETT 113
MS NPF SD NTSFMHMG F LYQ WW AWL TT
Sbjct: 8633 MSHNPFCSDQNTSFMHMGLFTLYQPMWWQAWLP*GTT 8523
Score = 64.3 bits (134), Expect(3) = 4e-033
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -3 / +3
Query: 113 CCFAMQPS*PPRQLIKHKLAHMHEGSIVIRVKRIGAH 3
CC + QPS PP +LIK K AHMHEGSI+IR KRI AH
Sbjct: 8523 CCSSRQPSLPPHRLIKRK*AHMHEGSILIRAKRIVAH 8633
Score = 62.0 bits (129), Expect(3) = 2e-049
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2 / -2
Query: 257 GLCHPEVKMLELHERKECTGGPTVAAE 337
GLCHPEVKMLELH RKECTGGP+ +E
Sbjct: 7391 GLCHPEVKMLELHRRKECTGGPSAVSE 7311
Score = 57.4 bits (119), Expect(3) = 2e-033
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +2 / -1
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNN 112
+EPQSFLLGS+YFLHAYGPIY RNN
Sbjct: 8634 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNN 8524
Score = 57.0 bits (118), Expect(3) = 4e-027
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +1 / -3
Query: 4 *APILFTRITILPSCIWANLCFIS*RGG*LGCIAKQQ 114
*A ILF RI ILPSCIWA L FIS GG LGC+ +QQ
Sbjct: 8632 *ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQ 8522
Score = 56.5 bits (117), Expect(3) = 8e-026
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -1 / +1
Query: 112 VVSQCNQASHHVS**SINWPICMKEVL*SE*KGLGLM 2
VV Q NQA HH+ **S+N PICMKEV *SE KGL L+
Sbjct: 8524 VVPQGNQACHHIG**SVNRPICMKEVF*SEQKGLWLI 8634
Score = 39.1 bits (79), Expect(3) = 2e-033
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1 / -1
Query: 256 RSMPPRGKNARAP*KKRMHRWSNCG 330
R+MPP GK+A A K+ M+RWS CG
Sbjct: 7392 RAMPPGGKDAGASSKEGMYRWSICG 7318
Score = 33.1 bits (66), Expect(3) = 7e-039
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = -3 / +2
Query: 344 RTPQLPQLDHLCILFFHGALAFLPLGGIDL 255
R Q PQ+DHL I F A A LP GGI L
Sbjct: 7304 RQIQTPQMDHLYIPSFDEAPASLPPGGIAL 7393
Score = 32.2 bits (64), Expect(3) = 4e-033
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1 / +3
Query: 322 WTTCAFFSFMEL*HFYLWVA* 260
WTTC F M+L H YL VA*
Sbjct: 7326 WTTCTFLPSMKLQHLYLRVA* 7388
Score = 29.9 bits (59), Expect(3) = 4e-027
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3 / -3
Query: 255 QVYATQR*KC*SSMKEKNAQVVQL 326
Q YAT+R*+C S ++ +N QVV L
Sbjct: 7393 QGYATRR*RCWSFIEGRNVQVVHL 7322
Score = 28.6 bits (56), Expect(3) = 8e-026
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2 / +1
Query: 345 SDTSAATVGPPVHXXXXXXXXXXXSGWHRP 256
S S GPPVH SGWH P
Sbjct: 7303 SSDSDTADGPPVHSFLR*SSSIFTSGWHSP 7392
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0046E09
Length = 146776
Score = 124 bits (265), Expect(3) = 9e-048
Identities = 47/50 (94%), Positives = 49/50 (98%)
Frame = +2 / +3
Query: 110 NSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
+SFRMFSNEDVTIGSWMLAMNVNHENTHALC P+CTESSIAVWDIPKCSG
Sbjct: 65433 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 65582
Score = 107 bits (228), Expect(3) = 3e-037
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -2 / -1
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFG+SQTAIEDSV SG QSACVFSWLTFIASI DPIVTSSLLNIRKL
Sbjct: 65581 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIRKL 65435
Score = 100 bits (213), Expect(3) = 8e-032
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +1 / +2
Query: 112 QFPYVQQRGRYNWIVDACYERQP*EHTCTL*T*LHGVFNCCLGHPKMLR 258
QFPYVQQ G Y WI+DACYERQP*EHTCTL T*+H VFNCCLG+ KM R
Sbjct: 65435 QFPYVQQ*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFR 65581
Score = 99.1 bits (210), Expect(3) = 2e-031
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = -1 / -3
Query: 259 T*AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTET 113
T* FW++PNSN*RL A+R TKCMCVLMVDVHSKHP SN N+L+AEHTET
Sbjct: 65582 T*TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTET 65436
Score = 88.6 bits (187), Expect(3) = 2e-025
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +3 / +1
Query: 114 VSVCSATRTLQLDRGCLL*TSTMRTHMHFVNLTARSLQLLFGTSQNAQV 260
VSVCSA R L LD GCLL*TSTMRTHMHFV+L+A+SLQLLFG QN QV
Sbjct: 65437 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLFGIFQNVQV 65583
Score = 85.8 bits (181), Expect(3) = 4e-024
Identities = 38/49 (77%), Positives = 42/49 (85%)
Frame = -3 / -2
Query: 260 DLSILGCPKQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGN 114
+L+IL PKQQLKT C+QV+KVHVCSHG*RS*QAS IQ * P C*TYGN
Sbjct: 65583 NLNILEYPKQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGN 65437
Score = 74.8 bits (157), Expect(3) = 3e-037
Identities = 33/41 (80%), Positives = 35/41 (85%)
Frame = -2 / -2
Query: 123 IRKLLFRNATKLATTSADKA*IGPYA*RKYCDPSKKDWGSW 1
+ LLF ATKLATTSADKA*IGPYA*RKY DPSKKD GS+
Sbjct: 64848 VNYLLFLKATKLATTSADKA*IGPYA*RKYSDPSKKDCGSY 64726
Score = 64.8 bits (135), Expect(3) = 9e-048
Identities = 26/37 (70%), Positives = 26/37 (70%)
Frame = +3 / +3
Query: 3 MSPNPFYSDHNTSFMHMGQFMLYQLTWWLAWLHCETT 113
MS NPF SD NTSFMHMG F LYQ WW AWL TT
Sbjct: 64728 MSHNPFCSDQNTSFMHMGLFTLYQPMWWQAWLP*GTT 64838
Score = 64.3 bits (134), Expect(3) = 2e-031
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -3 / -3
Query: 113 CCFAMQPS*PPRQLIKHKLAHMHEGSIVIRVKRIGAH 3
CC + QPS PP +LIK K AHMHEGSI+IR KRI AH
Sbjct: 64838 CCSSRQPSLPPHRLIKRK*AHMHEGSILIRAKRIVAH 64728
Score = 62.0 bits (129), Expect(3) = 9e-048
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2 / +3
Query: 257 GLCHPEVKMLELHERKECTGGPTVAAE 337
GLCHPEVKMLELH RKECTGGP+ +E
Sbjct: 65970 GLCHPEVKMLELHRRKECTGGPSAVSE 66050
Score = 57.4 bits (119), Expect(3) = 8e-032
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +2 / +2
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNN 112
+EPQSFLLGS+YFLHAYGPIY RNN
Sbjct: 64727 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNN 64837
Score = 57.0 bits (118), Expect(3) = 2e-025
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +1 / +1
Query: 4 *APILFTRITILPSCIWANLCFIS*RGG*LGCIAKQQ 114
*A ILF RI ILPSCIWA L FIS GG LGC+ +QQ
Sbjct: 64729 *ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQ 64839
Score = 56.5 bits (117), Expect(3) = 4e-024
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -1 / -1
Query: 112 VVSQCNQASHHVS**SINWPICMKEVL*SE*KGLGLM 2
VV Q NQA HH+ **S+N PICMKEV *SE KGL L+
Sbjct: 64837 VVPQGNQACHHIG**SVNRPICMKEVF*SEQKGLWLI 64727
Score = 39.1 bits (79), Expect(3) = 8e-032
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1 / +2
Query: 256 RSMPPRGKNARAP*KKRMHRWSNCG 330
R+MPP GK+A A K+ M+RWS CG
Sbjct: 65969 RAMPPGGKDAGASSKEGMYRWSICG 66043
Score = 33.1 bits (66), Expect(3) = 3e-037
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = -3 / -2
Query: 344 RTPQLPQLDHLCILFFHGALAFLPLGGIDL 255
R Q PQ+DHL I F A A LP GGI L
Sbjct: 66057 RQIQTPQMDHLYIPSFDEAPASLPPGGIAL 65968
Score = 32.2 bits (64), Expect(3) = 2e-031
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1 / -3
Query: 322 WTTCAFFSFMEL*HFYLWVA* 260
WTTC F M+L H YL VA*
Sbjct: 66035 WTTCTFLPSMKLQHLYLRVA* 65973
Score = 29.9 bits (59), Expect(3) = 2e-025
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3 / +1
Query: 255 QVYATQR*KC*SSMKEKNAQVVQL 326
Q YAT+R*+C S ++ +N QVV L
Sbjct: 65968 QGYATRR*RCWSFIEGRNVQVVHL 66039
Score = 28.6 bits (56), Expect(3) = 4e-024
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2 / -1
Query: 345 SDTSAATVGPPVHXXXXXXXXXXXSGWHRP 256
S S GPPVH SGWH P
Sbjct: 66058 SSDSDTADGPPVHSFLR*SSSIFTSGWHSP 65969
>dbj|AP004239.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1115_C07, ***
SEQUENCING IN PROGRESS ***
Length = 153595
Score = 124 bits (265), Expect(3) = 1e-047
Identities = 47/50 (94%), Positives = 49/50 (98%)
Frame = +2 / +3
Query: 110 NSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
+SFRMFSNEDVTIGSWMLAMNVNHENTHALC P+CTESSIAVWDIPKCSG
Sbjct: 120168 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 120317
Score = 107 bits (228), Expect(3) = 4e-037
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -2 / -1
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFG+SQTAIEDSV SG QSACVFSWLTFIASI DPIVTSSLLNIRKL
Sbjct: 120316 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIRKL 120170
Score = 100 bits (213), Expect(3) = 9e-032
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +1 / +2
Query: 112 QFPYVQQRGRYNWIVDACYERQP*EHTCTL*T*LHGVFNCCLGHPKMLR 258
QFPYVQQ G Y WI+DACYERQP*EHTCTL T*+H VFNCCLG+ KM R
Sbjct: 120170 QFPYVQQ*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFR 120316
Score = 99.1 bits (210), Expect(3) = 2e-031
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = -1 / -3
Query: 259 T*AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTET 113
T* FW++PNSN*RL A+R TKCMCVLMVDVHSKHP SN N+L+AEHTET
Sbjct: 120317 T*TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTET 120171
Score = 88.6 bits (187), Expect(3) = 2e-025
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +3 / +1
Query: 114 VSVCSATRTLQLDRGCLL*TSTMRTHMHFVNLTARSLQLLFGTSQNAQV 260
VSVCSA R L LD GCLL*TSTMRTHMHFV+L+A+SLQLLFG QN QV
Sbjct: 120172 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLFGIFQNVQV 120318
Score = 85.8 bits (181), Expect(3) = 4e-024
Identities = 38/49 (77%), Positives = 42/49 (85%)
Frame = -3 / -2
Query: 260 DLSILGCPKQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGN 114
+L+IL PKQQLKT C+QV+KVHVCSHG*RS*QAS IQ * P C*TYGN
Sbjct: 120318 NLNILEYPKQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGN 120172
Score = 74.8 bits (157), Expect(3) = 4e-037
Identities = 33/41 (80%), Positives = 35/41 (85%)
Frame = -2 / -2
Query: 123 IRKLLFRNATKLATTSADKA*IGPYA*RKYCDPSKKDWGSW 1
+ LLF ATKLATTSADKA*IGPYA*RKY DPSKKD GS+
Sbjct: 119583 VNYLLFLKATKLATTSADKA*IGPYA*RKYSDPSKKDCGSY 119461
Score = 64.8 bits (135), Expect(3) = 1e-047
Identities = 26/37 (70%), Positives = 26/37 (70%)
Frame = +3 / +3
Query: 3 MSPNPFYSDHNTSFMHMGQFMLYQLTWWLAWLHCETT 113
MS NPF SD NTSFMHMG F LYQ WW AWL TT
Sbjct: 119463 MSHNPFCSDQNTSFMHMGLFTLYQPMWWQAWLP*GTT 119573
Score = 64.3 bits (134), Expect(3) = 2e-031
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -3 / -3
Query: 113 CCFAMQPS*PPRQLIKHKLAHMHEGSIVIRVKRIGAH 3
CC + QPS PP +LIK K AHMHEGSI+IR KRI AH
Sbjct: 119573 CCSSRQPSLPPHRLIKRK*AHMHEGSILIRAKRIVAH 119463
Score = 62.0 bits (129), Expect(3) = 1e-047
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2 / +3
Query: 257 GLCHPEVKMLELHERKECTGGPTVAAE 337
GLCHPEVKMLELH RKECTGGP+ +E
Sbjct: 120705 GLCHPEVKMLELHRRKECTGGPSAVSE 120785
Score = 57.4 bits (119), Expect(3) = 9e-032
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +2 / +2
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNN 112
+EPQSFLLGS+YFLHAYGPIY RNN
Sbjct: 119462 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNN 119572
Score = 57.0 bits (118), Expect(3) = 2e-025
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +1 / +1
Query: 4 *APILFTRITILPSCIWANLCFIS*RGG*LGCIAKQQ 114
*A ILF RI ILPSCIWA L FIS GG LGC+ +QQ
Sbjct: 119464 *ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQ 119574
Score = 56.5 bits (117), Expect(3) = 4e-024
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -1 / -1
Query: 112 VVSQCNQASHHVS**SINWPICMKEVL*SE*KGLGLM 2
VV Q NQA HH+ **S+N PICMKEV *SE KGL L+
Sbjct: 119572 VVPQGNQACHHIG**SVNRPICMKEVF*SEQKGLWLI 119462
Score = 39.1 bits (79), Expect(3) = 9e-032
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1 / +2
Query: 256 RSMPPRGKNARAP*KKRMHRWSNCG 330
R+MPP GK+A A K+ M+RWS CG
Sbjct: 120704 RAMPPGGKDAGASSKEGMYRWSICG 120778
Score = 33.1 bits (66), Expect(3) = 4e-037
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = -3 / -2
Query: 344 RTPQLPQLDHLCILFFHGALAFLPLGGIDL 255
R Q PQ+DHL I F A A LP GGI L
Sbjct: 120792 RQIQTPQMDHLYIPSFDEAPASLPPGGIAL 120703
Score = 32.2 bits (64), Expect(3) = 2e-031
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1 / -3
Query: 322 WTTCAFFSFMEL*HFYLWVA* 260
WTTC F M+L H YL VA*
Sbjct: 120770 WTTCTFLPSMKLQHLYLRVA* 120708
Score = 29.9 bits (59), Expect(3) = 2e-025
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3 / +1
Query: 255 QVYATQR*KC*SSMKEKNAQVVQL 326
Q YAT+R*+C S ++ +N QVV L
Sbjct: 120703 QGYATRR*RCWSFIEGRNVQVVHL 120774
Score = 28.6 bits (56), Expect(3) = 4e-024
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2 / -1
Query: 345 SDTSAATVGPPVHXXXXXXXXXXXSGWHRP 256
S S GPPVH SGWH P
Sbjct: 120793 SSDSDTADGPPVHSFLR*SSSIFTSGWHSP 120704
>dbj|AP004844.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone B1160E02, ***
SEQUENCING IN PROGRESS ***
Length = 189953
Score = 124 bits (265), Expect(3) = 1e-047
Identities = 47/50 (94%), Positives = 49/50 (98%)
Frame = +2 / +3
Query: 110 NSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
+SFRMFSNEDVTIGSWMLAMNVNHENTHALC P+CTESSIAVWDIPKCSG
Sbjct: 141726 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 141875
Score = 107 bits (228), Expect(3) = 5e-037
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -2 / -2
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFG+SQTAIEDSV SG QSACVFSWLTFIASI DPIVTSSLLNIRKL
Sbjct: 141874 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIRKL 141728
Score = 100 bits (213), Expect(3) = 1e-031
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +1 / +2
Query: 112 QFPYVQQRGRYNWIVDACYERQP*EHTCTL*T*LHGVFNCCLGHPKMLR 258
QFPYVQQ G Y WI+DACYERQP*EHTCTL T*+H VFNCCLG+ KM R
Sbjct: 141728 QFPYVQQ*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFR 141874
Score = 99.1 bits (210), Expect(3) = 3e-031
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = -1 / -1
Query: 259 T*AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTET 113
T* FW++PNSN*RL A+R TKCMCVLMVDVHSKHP SN N+L+AEHTET
Sbjct: 141875 T*TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTET 141729
Score = 88.6 bits (187), Expect(3) = 3e-025
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +3 / +1
Query: 114 VSVCSATRTLQLDRGCLL*TSTMRTHMHFVNLTARSLQLLFGTSQNAQV 260
VSVCSA R L LD GCLL*TSTMRTHMHFV+L+A+SLQLLFG QN QV
Sbjct: 141730 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLFGIFQNVQV 141876
Score = 85.8 bits (181), Expect(3) = 6e-024
Identities = 38/49 (77%), Positives = 42/49 (85%)
Frame = -3 / -3
Query: 260 DLSILGCPKQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGN 114
+L+IL PKQQLKT C+QV+KVHVCSHG*RS*QAS IQ * P C*TYGN
Sbjct: 141876 NLNILEYPKQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGN 141730
Score = 74.8 bits (157), Expect(3) = 5e-037
Identities = 33/41 (80%), Positives = 35/41 (85%)
Frame = -2 / -3
Query: 123 IRKLLFRNATKLATTSADKA*IGPYA*RKYCDPSKKDWGSW 1
+ LLF ATKLATTSADKA*IGPYA*RKY DPSKKD GS+
Sbjct: 141141 VNYLLFLKATKLATTSADKA*IGPYA*RKYSDPSKKDCGSY 141019
Score = 64.8 bits (135), Expect(3) = 1e-047
Identities = 26/37 (70%), Positives = 26/37 (70%)
Frame = +3 / +3
Query: 3 MSPNPFYSDHNTSFMHMGQFMLYQLTWWLAWLHCETT 113
MS NPF SD NTSFMHMG F LYQ WW AWL TT
Sbjct: 141021 MSHNPFCSDQNTSFMHMGLFTLYQPMWWQAWLP*GTT 141131
Score = 64.3 bits (134), Expect(3) = 3e-031
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -3 / -1
Query: 113 CCFAMQPS*PPRQLIKHKLAHMHEGSIVIRVKRIGAH 3
CC + QPS PP +LIK K AHMHEGSI+IR KRI AH
Sbjct: 141131 CCSSRQPSLPPHRLIKRK*AHMHEGSILIRAKRIVAH 141021
Score = 62.0 bits (129), Expect(3) = 1e-047
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2 / +3
Query: 257 GLCHPEVKMLELHERKECTGGPTVAAE 337
GLCHPEVKMLELH RKECTGGP+ +E
Sbjct: 142263 GLCHPEVKMLELHRRKECTGGPSAVSE 142343
Score = 57.4 bits (119), Expect(3) = 1e-031
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +2 / +2
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNN 112
+EPQSFLLGS+YFLHAYGPIY RNN
Sbjct: 141020 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNN 141130
Score = 57.0 bits (118), Expect(3) = 3e-025
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +1 / +1
Query: 4 *APILFTRITILPSCIWANLCFIS*RGG*LGCIAKQQ 114
*A ILF RI ILPSCIWA L FIS GG LGC+ +QQ
Sbjct: 141022 *ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQ 141132
Score = 56.5 bits (117), Expect(3) = 6e-024
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -1 / -2
Query: 112 VVSQCNQASHHVS**SINWPICMKEVL*SE*KGLGLM 2
VV Q NQA HH+ **S+N PICMKEV *SE KGL L+
Sbjct: 141130 VVPQGNQACHHIG**SVNRPICMKEVF*SEQKGLWLI 141020
Score = 39.1 bits (79), Expect(3) = 1e-031
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1 / +2
Query: 256 RSMPPRGKNARAP*KKRMHRWSNCG 330
R+MPP GK+A A K+ M+RWS CG
Sbjct: 142262 RAMPPGGKDAGASSKEGMYRWSICG 142336
Score = 33.1 bits (66), Expect(3) = 5e-037
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = -3 / -3
Query: 344 RTPQLPQLDHLCILFFHGALAFLPLGGIDL 255
R Q PQ+DHL I F A A LP GGI L
Sbjct: 142350 RQIQTPQMDHLYIPSFDEAPASLPPGGIAL 142261
Score = 32.2 bits (64), Expect(3) = 3e-031
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1 / -1
Query: 322 WTTCAFFSFMEL*HFYLWVA* 260
WTTC F M+L H YL VA*
Sbjct: 142328 WTTCTFLPSMKLQHLYLRVA* 142266
Score = 29.9 bits (59), Expect(3) = 3e-025
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3 / +1
Query: 255 QVYATQR*KC*SSMKEKNAQVVQL 326
Q YAT+R*+C S ++ +N QVV L
Sbjct: 142261 QGYATRR*RCWSFIEGRNVQVVHL 142332
Score = 28.6 bits (56), Expect(3) = 6e-024
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2 / -2
Query: 345 SDTSAATVGPPVHXXXXXXXXXXXSGWHRP 256
S S GPPVH SGWH P
Sbjct: 142351 SSDSDTADGPPVHSFLR*SSSIFTSGWHSP 142262
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 124 bits (265), Expect(3) = 2e-044
Identities = 47/50 (94%), Positives = 49/50 (98%)
Frame = +2 / +1
Query: 110 NSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
+SFRMFSNEDVTIGSWMLAMNVNHENTHALC P+CTESSIAVWDIPKCSG
Sbjct: 2800195 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 2800344
Score = 107 bits (228), Expect(3) = 9e-034
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -2 / -2
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFG+SQTAIEDSV SG QSACVFSWLTFIASI DPIVTSSLLNIRKL
Sbjct: 2800343 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIRKL 2800197
Score = 100 bits (213), Expect(3) = 2e-028
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +1 / +3
Query: 112 QFPYVQQRGRYNWIVDACYERQP*EHTCTL*T*LHGVFNCCLGHPKMLR 258
QFPYVQQ G Y WI+DACYERQP*EHTCTL T*+H VFNCCLG+ KM R
Sbjct: 2800197 QFPYVQQ*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFR 2800343
Score = 99.1 bits (210), Expect(3) = 5e-028
Identities = 39/49 (79%), Positives = 44/49 (89%)
Frame = -1 / -1
Query: 259 T*AFWDVPNSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTET 113
T* FW++PNSN*RL A+R TKCMCVLMVDVHSKHP SN N+L+AEHTET
Sbjct: 2800344 T*TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTET 2800198
Score = 88.6 bits (187), Expect(2) = 1e-022
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +3 / +2
Query: 114 VSVCSATRTLQLDRGCLL*TSTMRTHMHFVNLTARSLQLLFGTSQNAQV 260
VSVCSA R L LD GCLL*TSTMRTHMHFV+L+A+SLQLLFG QN QV
Sbjct: 2800199 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLFGIFQNVQV 2800345
Score = 85.8 bits (181), Expect(2) = 1e-021
Identities = 38/49 (77%), Positives = 42/49 (85%)
Frame = -3 / -3
Query: 260 DLSILGCPKQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGN 114
+L+IL PKQQLKT C+QV+KVHVCSHG*RS*QAS IQ * P C*TYGN
Sbjct: 2800345 NLNILEYPKQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGN 2800199
Score = 74.8 bits (157), Expect(3) = 9e-034
Identities = 33/41 (80%), Positives = 35/41 (85%)
Frame = -2 / -3
Query: 123 IRKLLFRNATKLATTSADKA*IGPYA*RKYCDPSKKDWGSW 1
+ LLF ATKLATTSADKA*IGPYA*RKY DPSKKD GS+
Sbjct: 2799610 VNYLLFLKATKLATTSADKA*IGPYA*RKYSDPSKKDCGSY 2799488
Score = 64.8 bits (135), Expect(3) = 2e-044
Identities = 26/37 (70%), Positives = 26/37 (70%)
Frame = +3 / +1
Query: 3 MSPNPFYSDHNTSFMHMGQFMLYQLTWWLAWLHCETT 113
MS NPF SD NTSFMHMG F LYQ WW AWL TT
Sbjct: 2799490 MSHNPFCSDQNTSFMHMGLFTLYQPMWWQAWLP*GTT 2799600
Score = 64.3 bits (134), Expect(3) = 5e-028
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -3 / -1
Query: 113 CCFAMQPS*PPRQLIKHKLAHMHEGSIVIRVKRIGAH 3
CC + QPS PP +LIK K AHMHEGSI+IR KRI AH
Sbjct: 2799600 CCSSRQPSLPPHRLIKRK*AHMHEGSILIRAKRIVAH 2799490
Score = 62.0 bits (129), Expect(3) = 2e-044
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2 / +1
Query: 257 GLCHPEVKMLELHERKECTGGPTVAAE 337
GLCHPEVKMLELH RKECTGGP+ +E
Sbjct: 2800732 GLCHPEVKMLELHRRKECTGGPSAVSE 2800812
Score = 57.4 bits (119), Expect(3) = 2e-028
Identities = 22/37 (59%), Positives = 24/37 (64%)
Frame = +2 / +3
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNN 112
+EPQSFLLGS+YFLHAYGPIY RNN
Sbjct: 2799489 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNN 2799599
Score = 57.0 bits (118), Expect(2) = 1e-022
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +1 / +2
Query: 4 *APILFTRITILPSCIWANLCFIS*RGG*LGCIAKQQ 114
*A ILF RI ILPSCIWA L FIS GG LGC+ +QQ
Sbjct: 2799491 *ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQ 2799601
Score = 56.5 bits (117), Expect(2) = 1e-021
Identities = 26/37 (70%), Positives = 29/37 (78%)
Frame = -1 / -2
Query: 112 VVSQCNQASHHVS**SINWPICMKEVL*SE*KGLGLM 2
VV Q NQA HH+ **S+N PICMKEV *SE KGL L+
Sbjct: 2799599 VVPQGNQACHHIG**SVNRPICMKEVF*SEQKGLWLI 2799489
Score = 39.1 bits (79), Expect(3) = 2e-028
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1 / +3
Query: 256 RSMPPRGKNARAP*KKRMHRWSNCG 330
R+MPP GK+A A K+ M+RWS CG
Sbjct: 2800731 RAMPPGGKDAGASSKEGMYRWSICG 2800805
Score = 33.1 bits (66), Expect(3) = 9e-034
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = -3 / -3
Query: 344 RTPQLPQLDHLCILFFHGALAFLPLGGIDL 255
R Q PQ+DHL I F A A LP GGI L
Sbjct: 2800819 RQIQTPQMDHLYIPSFDEAPASLPPGGIAL 2800730
Score = 32.2 bits (64), Expect(3) = 5e-028
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1 / -1
Query: 322 WTTCAFFSFMEL*HFYLWVA* 260
WTTC F M+L H YL VA*
Sbjct: 2800797 WTTCTFLPSMKLQHLYLRVA* 2800735
>gb|AU055721.1|AU055721 AU055721 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20018_1A, mRNA sequence
Length = 352
Score = 157 bits (338), Expect = 9e-037
Identities = 70/78 (89%), Positives = 71/78 (91%)
Frame = -2 / -3
Query: 234 TAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKLLFRNATKLATTSADKA*IG 55
TAIEDSV SG QSACVFSWLTFIASI DPIVTSSLLNIRKLLF ATKLATTSADKA*IG
Sbjct: 350 TAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIRKLLFLKATKLATTSADKA*IG 171
Query: 54 PYA*RKYCDPSKKDWGSW 1
PYA*RKY DPSKKD GS+
Sbjct: 170 PYA*RKYSDPSKKDCGSY 117
Score = 154 bits (331), Expect = 9e-036
Identities = 61/78 (78%), Positives = 64/78 (82%)
Frame = +2 / +1
Query: 2 HEPQSFLLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNH 181
+EPQSFLLGS+YFLHAYGPIY RNNSFRMFSNEDVTIGSWMLAMNVNH
Sbjct: 118 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFSNEDVTIGSWMLAMNVNH 297
Query: 182 ENTHALCEPDCTESSIAV 235
ENTHALC P+CTESSIAV
Sbjct: 298 ENTHALCSPECTESSIAV 351
Score = 140 bits (300), Expect = 2e-031
Identities = 59/77 (76%), Positives = 63/77 (81%)
Frame = +1 / +3
Query: 4 *APILFTRITILPSCIWANLCFIS*RGG*LGCIAKQQFPYVQQRGRYNWIVDACYERQP* 183
*A ILF RI ILPSCIWA L FIS GG LGC+ +QQFPYVQQ G Y WI+DACYERQP*
Sbjct: 120 *ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQFPYVQQ*GCYYWILDACYERQP* 299
Query: 184 EHTCTL*T*LHGVFNCC 234
EHTCTL T*+H VFNCC
Sbjct: 300 EHTCTLFT*VHRVFNCC 350
Score = 139 bits (299), Expect = 2e-031
Identities = 60/78 (76%), Positives = 63/78 (80%)
Frame = +3 / +2
Query: 3 MSPNPFYSDHNTSFMHMGQFMLYQLTWWLAWLHCETTVSVCSATRTLQLDRGCLL*TSTM 182
MS NPF SD NTSFMHMG F LYQ WW AWL TTVSVCSA R L LD GCLL*TSTM
Sbjct: 119 MSHNPFCSDQNTSFMHMGLFTLYQPMWWQAWLP*GTTVSVCSAMRMLLLDPGCLL*TSTM 298
Query: 183 RTHMHFVNLTARSLQLLF 236
RTHMHFV+L+A+SLQLLF
Sbjct: 299 RTHMHFVHLSAQSLQLLF 352
Score = 139 bits (298), Expect = 3e-031
Identities = 60/78 (76%), Positives = 65/78 (83%)
Frame = -3 / -1
Query: 236 KQQLKTPCSQVHKVHVCSHG*RS*QASTIQL*RPRC*TYGNCCFAMQPS*PPRQLIKHKL 57
KQQLKT C+QV+KVHVCSHG*RS*QAS IQ * P C*TYGNCC + QPS PP +LIK K
Sbjct: 352 KQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGNCCSSRQPSLPPHRLIKRK* 173
Query: 56 AHMHEGSIVIRVKRIGAH 3
AHMHEGSI+IR KRI AH
Sbjct: 172 AHMHEGSILIRAKRIVAH 119
Score = 137 bits (293), Expect = 2e-030
Identities = 60/78 (76%), Positives = 66/78 (84%)
Frame = -1 / -2
Query: 235 NSN*RLRAVRFTKCMCVLMVDVHSKHPRSNCNVLVAEHTETVVSQCNQASHHVS**SINW 56
NSN*RL A+R TKCMCVLMVDVHSKHP SN N+L+AEHTETVV Q NQA HH+ **S+N
Sbjct: 351 NSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTETVVPQGNQACHHIG**SVNR 172
Query: 55 PICMKEVL*SE*KGLGLM 2
PICMKEV *SE KGL L+
Sbjct: 171 PICMKEVF*SEQKGLWLI 118
>dbj|AK063280.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C10, full
insert sequence
Length = 1770
Score = 125 bits (268), Expect = 4e-027
Identities = 51/109 (46%), Positives = 64/109 (58%)
Frame = +2 / +3
Query: 20 LLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNHENTHAL 199
LLG++YF HA G +Y N+S RMF EDVTIGSWMLAMNV HE+ A+
Sbjct: 963 LLGNEYFSHASGLLYALSSEVVGSLAATNNDSLRMFDYEDVTIGSWMLAMNVKHEDNRAM 1142
Query: 200 CEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAEVSE 346
C+ CT +SIAVWD KCS C+ + LH C+ PT+ EV +
Sbjct: 1143 CDSACTPTSIAVWDSKKCSNSCNTTEIVKALHNTTLCSKSPTLPPEVED 1289
>dbj|AK063319.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G12, full
insert sequence
Length = 1621
Score = 125 bits (268), Expect = 4e-027
Identities = 51/109 (46%), Positives = 64/109 (58%)
Frame = +2 / +3
Query: 20 LLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNHENTHAL 199
LLG++YF HA G +Y N+S RMF EDVTIGSWMLAMNV HE+ A+
Sbjct: 963 LLGNEYFSHASGLLYALSSEVVGSLAATNNDSLRMFDYEDVTIGSWMLAMNVKHEDNRAM 1142
Query: 200 CEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAEVSE 346
C+ CT +SIAVWD KCS C+ + LH C+ PT+ EV +
Sbjct: 1143 CDSACTPTSIAVWDSKKCSNSCNTTEIVKALHNTTLCSKSPTLPPEVED 1289
>ref|XM_476102.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1173
Score = 125 bits (268), Expect = 4e-027
Identities = 51/109 (46%), Positives = 64/109 (58%)
Frame = +2 / +1
Query: 20 LLGSQYFLHAYGPIYXXXXXXXXXXXXXRNNSFRMFSNEDVTIGSWMLAMNVNHENTHAL 199
LLG++YF HA G +Y N+S RMF EDVTIGSWMLAMNV HE+ A+
Sbjct: 841 LLGNEYFSHASGLLYALSSEVVGSLAATNNDSLRMFDYEDVTIGSWMLAMNVKHEDNRAM 1020
Query: 200 CEPDCTESSIAVWDIPKCSGLCHPEVKMLELHERKECTGGPTVAAEVSE 346
C+ CT +SIAVWD KCS C+ + LH C+ PT+ EV +
Sbjct: 1021 CDSACTPTSIAVWDSKKCSNSCNTTEIVKALHNTTLCSKSPTLPPEVED 1167
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 124 bits (265), Expect = 1e-026
Identities = 47/50 (94%), Positives = 49/50 (98%)
Frame = +2 / +1
Query: 110 NSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
+SFRMFSNEDVTIGSWMLAMNVNHENTHALC P+CTESSIAVWDIPKCSG
Sbjct: 2800195 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 2800344
Score = 107 bits (228), Expect = 1e-021
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -2 / -3
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFG+SQTAIEDSV SG QSACVFSWLTFIASI DPIVTSSLLNIRKL
Sbjct: 2800343 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIRKL 2800197
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 124 bits (265), Expect = 1e-026
Identities = 47/50 (94%), Positives = 49/50 (98%)
Frame = +2 / +3
Query: 110 NSFRMFSNEDVTIGSWMLAMNVNHENTHALCEPDCTESSIAVWDIPKCSG 259
+SFRMFSNEDVTIGSWMLAMNVNHENTHALC P+CTESSIAVWDIPKCSG
Sbjct: 2905287 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 2905436
Score = 107 bits (228), Expect = 1e-021
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = -2 / -3
Query: 258 PEHFGMSQTAIEDSVQSGSQSACVFSWLTFIASIHDPIVTSSLLNIRKL 112
PEHFG+SQTAIEDSV SG QSACVFSWLTFIASI DPIVTSSLLNIRKL
Sbjct: 2905435 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIRKL 2905289
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,771,296,311
Number of Sequences: 438736
Number of extensions: 75167483
Number of successful extensions: 276898
Number of sequences better than 1.0e-020: 17
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 147029236722
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)