TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3922840.2.1
(683 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV721369.1|CV721369 YBH--03-N22.b1 Rice before heading y... 182 3e-044
gb|CV721381.1|CV721381 YBH--03-O15.b1 Rice before heading y... 182 3e-044
ref|XM_475280.1| Oryza sativa (japonica cultivar-group), p... 181 9e-044
dbj|AK110640.1| Oryza sativa (japonica cultivar-group) cDNA... 179 3e-043
gb|CV730829.1|CV730829 FLO--04-J06.b1 Rice flower lambda ph... 178 4e-043
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 162 1e-039
gb|AC105769.2| Oryza sativa (japonica cultivar-group) chrom... 162 1e-039
gb|AC108502.3| Oryza sativa (japonica cultivar-group) chrom... 162 1e-039
gb|AACV01012241.1| Oryza sativa (japonica cultivar-group) c... 162 1e-039
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 162 3e-038
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 162 3e-038
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 162 3e-038
gb|C19368.1|C19368 C19368 Rice panicle at ripening stage Or... 117 1e-024
>gb|CV721369.1|CV721369 YBH--03-N22.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-N22, mRNA sequence
Length = 456
Score = 182 bits (393), Expect = 3e-044
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -1 / +3
Query: 494 TTSPHGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYAN 315
TT+PHGQA AIDCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYAN
Sbjct: 153 TTAPHGQAYAIDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYAN 332
Query: 314 MKTHDGQHKCP*S 276
M TH+G+HKCP*S
Sbjct: 333 MTTHNGRHKCP*S 371
Score = 143 bits (306), Expect = 3e-032
Identities = 58/70 (82%), Positives = 58/70 (82%)
Frame = +1 / -3
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY AP
Sbjct: 370 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAP 191
Query: 457 QSMASACPWG 486
QSMA ACP G
Sbjct: 190 QSMA*ACPCG 161
>gb|CV721381.1|CV721381 YBH--03-O15.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-O15, mRNA sequence
Length = 451
Score = 182 bits (393), Expect = 3e-044
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -1 / +2
Query: 494 TTSPHGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYAN 315
TT+PHGQA AIDCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYAN
Sbjct: 146 TTAPHGQAYAIDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYAN 325
Query: 314 MKTHDGQHKCP*S 276
M TH+G+HKCP*S
Sbjct: 326 MTTHNGRHKCP*S 364
Score = 143 bits (306), Expect = 3e-032
Identities = 58/70 (82%), Positives = 58/70 (82%)
Frame = +1 / -2
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY AP
Sbjct: 363 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAP 184
Query: 457 QSMASACPWG 486
QSMA ACP G
Sbjct: 183 QSMA*ACPCG 154
>ref|XM_475280.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 279
Score = 181 bits (389), Expect = 9e-044
Identities = 64/72 (88%), Positives = 68/72 (94%)
Frame = -1 / +1
Query: 494 TTSPHGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYAN 315
TT+PHGQA AIDCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYAN
Sbjct: 64 TTAPHGQAYAIDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYAN 243
Query: 314 MKTHDGQHKCP* 279
M TH+G+HKCP*
Sbjct: 244 MTTHNGRHKCP* 279
Score = 140 bits (300), Expect = 2e-031
Identities = 57/68 (83%), Positives = 57/68 (83%)
Frame = +1 / -2
Query: 283 GHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQS 462
GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY APQS
Sbjct: 275 GHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAPQS 96
Query: 463 MASACPWG 486
MA ACP G
Sbjct: 95 MA*ACPCG 72
>dbj|AK110640.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-C10, full
insert sequence
Length = 1012
Score = 179 bits (385), Expect = 3e-043
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = -1 / +1
Query: 494 TTSPHGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYAN 315
TT+PHGQA AIDCGA C YRCSKSGRPKMCLRACGTCCQ CGCVPPGTSGNE+VCPCYAN
Sbjct: 508 TTAPHGQAYAIDCGAKCGYRCSKSGRPKMCLRACGTCCQCCGCVPPGTSGNENVCPCYAN 687
Query: 314 MKTHDGQHKCP*S 276
M TH+G+HKCP*S
Sbjct: 688 MTTHNGRHKCP*S 726
Score = 140 bits (301), Expect(2) = 1e-031
Identities = 57/70 (81%), Positives = 57/70 (81%)
Frame = +1 / -3
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQ WQQVPHALRHI GRPDLLHRY AP
Sbjct: 725 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQHWQQVPHALRHIFGRPDLLHRYPHFAP 546
Query: 457 QSMASACPWG 486
QSMA ACP G
Sbjct: 545 QSMA*ACPCG 516
Score = 22.6 bits (43), Expect(2) = 1e-031
Identities = 5/7 (71%), Positives = 5/7 (71%)
Frame = +2 / -1
Query: 545 CCSPWPW 565
CC PW W
Sbjct: 151 CCLPWMW 131
>gb|CV730829.1|CV730829 FLO--04-J06.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--04-J06,
mRNA sequence
Length = 490
Score = 178 bits (384), Expect = 4e-043
Identities = 63/72 (87%), Positives = 68/72 (94%)
Frame = -1 / +3
Query: 491 TSPHGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANM 312
++PHGQA AIDCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM
Sbjct: 153 SAPHGQAYAIDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANM 332
Query: 311 KTHDGQHKCP*S 276
TH+G+HKCP*S
Sbjct: 333 TTHNGRHKCP*S 368
Score = 143 bits (306), Expect = 3e-032
Identities = 58/70 (82%), Positives = 58/70 (82%)
Frame = +1 / -1
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY AP
Sbjct: 367 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAP 188
Query: 457 QSMASACPWG 486
QSMA ACP G
Sbjct: 187 QSMA*ACPCG 158
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 162 bits (349), Expect(2) = 1e-039
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = -1 / +2
Query: 464 IDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKC 285
+DCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKC
Sbjct: 2359628 VDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGRHKC 2359807
Query: 284 P*S 276
P*S
Sbjct: 2359808 P*S 2359816
Score = 129 bits (277), Expect = 3e-028
Identities = 52/62 (83%), Positives = 52/62 (83%)
Frame = +1 / -3
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY AP
Sbjct: 2359815 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAP 2359636
Query: 457 QS 462
QS
Sbjct: 2359635 QS 2359630
Score = 24.4 bits (47), Expect(2) = 1e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / +1
Query: 494 TTSPHGQAEAI 462
TT+PHGQA AI
Sbjct: 2359492 TTAPHGQAYAI 2359524
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
complete sequence
Length = 106166
Score = 162 bits (349), Expect(2) = 1e-039
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = -1 / +2
Query: 464 IDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKC 285
+DCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKC
Sbjct: 33128 VDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGRHKC 33307
Query: 284 P*S 276
P*S
Sbjct: 33308 P*S 33316
Score = 129 bits (277), Expect = 3e-028
Identities = 52/62 (83%), Positives = 52/62 (83%)
Frame = +1 / -3
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY AP
Sbjct: 33315 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAP 33136
Query: 457 QS 462
QS
Sbjct: 33135 QS 33130
Score = 24.4 bits (47), Expect(2) = 1e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / +1
Query: 494 TTSPHGQAEAI 462
TT+PHGQA AI
Sbjct: 32992 TTAPHGQAYAI 33024
>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04,
complete sequence
Length = 103458
Score = 162 bits (349), Expect(2) = 1e-039
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = -1 / +2
Query: 464 IDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKC 285
+DCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKC
Sbjct: 69641 VDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGRHKC 69820
Query: 284 P*S 276
P*S
Sbjct: 69821 P*S 69829
Score = 129 bits (277), Expect = 3e-028
Identities = 52/62 (83%), Positives = 52/62 (83%)
Frame = +1 / -1
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY AP
Sbjct: 69828 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAP 69649
Query: 457 QS 462
QS
Sbjct: 69648 QS 69643
Score = 24.4 bits (47), Expect(2) = 1e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / +1
Query: 494 TTSPHGQAEAI 462
TT+PHGQA AI
Sbjct: 69505 TTAPHGQAYAI 69537
>gb|AACV01012241.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012241, whole
genome shotgun sequence
Length = 28966
Score = 162 bits (349), Expect(2) = 1e-039
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = -1 / -2
Query: 464 IDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKC 285
+DCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKC
Sbjct: 20751 VDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGRHKC 20572
Query: 284 P*S 276
P*S
Sbjct: 20571 P*S 20563
Score = 129 bits (277), Expect = 3e-028
Identities = 52/62 (83%), Positives = 52/62 (83%)
Frame = +1 / +2
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY AP
Sbjct: 20564 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAP 20743
Query: 457 QS 462
QS
Sbjct: 20744 QS 20749
Score = 24.4 bits (47), Expect(2) = 1e-039
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / -1
Query: 494 TTSPHGQAEAI 462
TT+PHGQA AI
Sbjct: 20887 TTAPHGQAYAI 20855
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 162 bits (349), Expect = 3e-038
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = -1 / +1
Query: 464 IDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKC 285
+DCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKC
Sbjct: 3404866 VDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGRHKC 3405045
Query: 284 P*S 276
P*S
Sbjct: 3405046 P*S 3405054
Score = 129 bits (277), Expect = 3e-028
Identities = 52/62 (83%), Positives = 52/62 (83%)
Frame = +1 / -2
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY AP
Sbjct: 3405053 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAP 3404874
Query: 457 QS 462
QS
Sbjct: 3404873 QS 3404868
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 162 bits (349), Expect = 3e-038
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = -1 / +1
Query: 464 IDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKC 285
+DCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKC
Sbjct: 20705179 VDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGRHKC 20705358
Query: 284 P*S 276
P*S
Sbjct: 20705359 P*S 20705367
Score = 129 bits (277), Expect = 3e-028
Identities = 52/62 (83%), Positives = 52/62 (83%)
Frame = +1 / -3
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY AP
Sbjct: 20705366 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAP 20705187
Query: 457 QS 462
QS
Sbjct: 20705186 QS 20705181
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 162 bits (349), Expect = 3e-038
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = -1 / +2
Query: 464 IDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKC 285
+DCGA C YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKC
Sbjct: 21054263 VDCGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGRHKC 21054442
Query: 284 P*S 276
P*S
Sbjct: 21054443 P*S 21054451
Score = 129 bits (277), Expect = 3e-028
Identities = 52/62 (83%), Positives = 52/62 (83%)
Frame = +1 / -3
Query: 277 DHGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAP 456
D GHL P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHALRHI GRPDLLHRY AP
Sbjct: 21054450 DQGHLWRPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHALRHIFGRPDLLHRYPHFAP 21054271
Query: 457 QS 462
QS
Sbjct: 21054270 QS 21054265
>gb|C19368.1|C19368 C19368 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10316_1A, mRNA sequence
Length = 308
Score = 117 bits (250), Expect = 1e-024
Identities = 41/47 (87%), Positives = 42/47 (89%)
Frame = -1 / +1
Query: 494 TTSPHGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPG 354
TT+PHGQA AIDCGA C YRCSKSGRPKMCL ACGTCCQRCGC PPG
Sbjct: 145 TTAPHGQAYAIDCGAKCGYRCSKSGRPKMCLXACGTCCQRCGCXPPG 285
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,088,758,247
Number of Sequences: 438736
Number of extensions: 58606899
Number of successful extensions: 357533
Number of sequences better than 1.0e-020: 17
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 152474764008
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)