TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848939.2.1
(952 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 87 1e-033
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 87 1e-033
emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromoso... 87 1e-033
gb|AACV01010468.1| Oryza sativa (japonica cultivar-group) c... 87 1e-033
gb|CB680925.1|CB680925 OSJNEf06H23.r OSJNEf Oryza sativa (j... 87 1e-033
gb|CB679398.1|CB679398 OSJNEf02N18.f OSJNEf Oryza sativa (j... 87 1e-033
gb|CB684926.1|CB684926 OSJNEf14O16.r OSJNEf Oryza sativa (j... 87 1e-033
gb|CB678992.1|CB678992 OSJNEf01P14.r OSJNEf Oryza sativa (j... 87 1e-033
gb|CB683325.1|CB683325 OSJNEf11J01.r OSJNEf Oryza sativa (j... 87 1e-033
gb|CB681355.1|CB681355 OSJNEf07H22.r OSJNEf Oryza sativa (j... 87 1e-033
gb|CA754554.1|CA754554 BR030001000_PLATE_F03_22_029.ab1 OA ... 87 1e-033
ref|XM_473863.1| Oryza sativa (japonica cultivar-group), p... 87 1e-033
gb|CB660560.1|CB660560 OSJNEd02H15.r OSJNEd Oryza sativa (j... 84 6e-033
gb|CB659556.1|CB659556 OSJNEc16K08.f OSJNEc Oryza sativa (j... 87 1e-031
ref|XM_473862.1| Oryza sativa (japonica cultivar-group), p... 87 1e-031
gb|CB680452.1|CB680452 OSJNEf05D04.r OSJNEf Oryza sativa (j... 80 1e-028
gb|CB681354.1|CB681354 OSJNEf07H22.f OSJNEf Oryza sativa (j... 81 1e-026
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / +2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 8790365 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 8790478
Score = 82.2 bits (173), Expect(2) = 4e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / -1
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 8790627 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 8790514
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / +2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 8790515 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 8790622
Score = 50.1 bits (103), Expect(2) = 4e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / -1
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 8790477 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 8790364
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 87.2 bits (184), Expect(2) = 1e-031
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +2 / +1
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPVDTLKLLACVDALNGL HAVVG A DTCCPLLS
Sbjct: 982045 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLS 982158
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / +1
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 992464 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 992577
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / -3
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 992726 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 992613
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / +1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 992614 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 992721
Score = 73.9 bits (155), Expect(2) = 1e-031
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +1 / +1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL +SLVLPVAISVLVN+CGK+VPS FQCP
Sbjct: 982195 TAIKAKALGLSLVLPVAISVLVNDCGKYVPSDFQCP 982302
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / -3
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 992576 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 992463
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
complete sequence
Length = 160484
Score = 87.2 bits (184), Expect(2) = 1e-031
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +2 / +2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPVDTLKLLACVDALNGL HAVVG A DTCCPLLS
Sbjct: 67514 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLS 67627
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / +2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 77933 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 78046
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / -3
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 78195 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 78082
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / +2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 78083 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 78190
Score = 73.9 bits (155), Expect(2) = 1e-031
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +1 / +2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL +SLVLPVAISVLVN+CGK+VPS FQCP
Sbjct: 67664 TAIKAKALGLSLVLPVAISVLVNDCGKYVPSDFQCP 67771
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / -3
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 78045 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 77932
>gb|AACV01010468.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010468, whole
genome shotgun sequence
Length = 17647
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / -2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 7767 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 7654
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / +2
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 7505 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 7618
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / -2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 7617 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 7510
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / +2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 7655 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 7768
>gb|CB680925.1|CB680925 OSJNEf06H23.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06H23 3', mRNA sequence
Length = 765
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / -3
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 757 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 644
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / +3
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 495 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 608
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / -3
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 607 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 500
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / +3
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 645 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 758
>gb|CB679398.1|CB679398 OSJNEf02N18.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf02N18 5', mRNA sequence
Length = 705
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / +2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 245 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 358
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / -1
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 507 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 394
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / +2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 395 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 502
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / -1
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 357 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 244
>gb|CB684926.1|CB684926 OSJNEf14O16.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14O16 3', mRNA sequence
Length = 697
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / -2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 657 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 544
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / +2
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 395 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 508
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / -2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 507 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 400
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / +2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 545 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 658
>gb|CB678992.1|CB678992 OSJNEf01P14.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf01P14 3', mRNA sequence
Length = 689
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / -3
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 642 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 529
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / +2
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 380 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 493
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / -3
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 492 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 385
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / +2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 530 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 643
>gb|CB683325.1|CB683325 OSJNEf11J01.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11J01 3', mRNA sequence
Length = 671
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / -1
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 650 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 537
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / +1
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 388 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 501
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / -1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 500 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 393
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / +1
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 538 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 651
>gb|CB681355.1|CB681355 OSJNEf07H22.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf07H22 3', mRNA sequence
Length = 643
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / -2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 615 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 502
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / +2
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 353 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 466
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / -2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 465 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 358
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / +2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 503 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 616
>gb|CA754554.1|CA754554 BR030001000_PLATE_F03_22_029.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030001000_PLATE_F03_22_029.ab1 similar to proline rich
protein homolog WCOR518 - wheat (fragment)
gi|1657851|gb|AAB18205.1| (U73214) cold acclimation
protein WCOR518 [Triticum aestivum], mRNA sequence
Length = 624
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / +2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 239 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 352
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / -1
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 501 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 388
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / +2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 389 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 496
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / -1
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 351 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 238
>ref|XM_473863.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 465
Score = 86.8 bits (183), Expect(2) = 1e-033
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = +2 / +1
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 202 GKCPVNTLKLLACVDALNGLVHAVVGAKASDTCCPLLS 315
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / -2
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 464 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 351
Score = 81.3 bits (171), Expect(2) = 1e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / +1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 352 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 459
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / -2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 314 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 201
>gb|CB660560.1|CB660560 OSJNEd02H15.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd02H15 3', mRNA sequence
Length = 716
Score = 84.5 bits (178), Expect(2) = 6e-033
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +2 / -3
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HAVVG A DTCCPLLS
Sbjct: 645 GKCPVNTLKLLACVDALNGLVHAVVGAKARDTCCPLLS 532
Score = 82.2 bits (173), Expect(2) = 5e-023
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = -3 / +2
Query: 506 YYGHWKLEGTCLPHSLTSTEMATGSTRLTLSALALMVV 393
Y GHWKLEGTCLPHSLTSTEMATG TRLT SALALM V
Sbjct: 383 YDGHWKLEGTCLPHSLTSTEMATGRTRLTPSALALMAV 496
Score = 81.3 bits (171), Expect(2) = 6e-033
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1 / -3
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKHVPSSFQCP
Sbjct: 495 TAIKAKALGVSLVLPVAISVLVNECGKHVPSSFQCP 388
Score = 50.1 bits (103), Expect(2) = 5e-023
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = -2 / +2
Query: 357 DSSGQQVSLALVPTTACARPLXXXXXXXXXXXXTGHLP 244
DSSGQQVSLAL PTTAC P TGH P
Sbjct: 533 DSSGQQVSLALAPTTACTSPFSASTHASSFSVFTGHFP 646
>gb|CB659556.1|CB659556 OSJNEc16K08.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16K08 5', mRNA sequence
Length = 869
Score = 87.2 bits (184), Expect(2) = 1e-031
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +2 / +2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPVDTLKLLACVDALNGL HAVVG A DTCCPLLS
Sbjct: 350 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLS 463
Score = 73.9 bits (155), Expect(2) = 1e-031
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +1 / +2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL +SLVLPVAISVLVN+CGK+VPS FQCP
Sbjct: 500 TAIKAKALGLSLVLPVAISVLVNDCGKYVPSDFQCP 607
>ref|XM_473862.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 609
Score = 87.2 bits (184), Expect(2) = 1e-031
Identities = 34/38 (89%), Positives = 34/38 (89%)
Frame = +2 / +1
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPVDTLKLLACVDALNGL HAVVG A DTCCPLLS
Sbjct: 328 GKCPVDTLKLLACVDALNGLVHAVVGATAGDTCCPLLS 441
Score = 73.9 bits (155), Expect(2) = 1e-031
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = +1 / +1
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL +SLVLPVAISVLVN+CGK+VPS FQCP
Sbjct: 478 TAIKAKALGLSLVLPVAISVLVNDCGKYVPSDFQCP 585
>gb|CB680452.1|CB680452 OSJNEf05D04.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05D04 3', mRNA sequence
Length = 527
Score = 79.9 bits (168), Expect(2) = 1e-028
Identities = 33/36 (91%), Positives = 34/36 (94%)
Frame = +1 / -3
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVA+SVLVNECGKHVPSSFQCP
Sbjct: 351 TAIKAKALGVSLVLPVAMSVLVNECGKHVPSSFQCP 244
Score = 71.6 bits (150), Expect(2) = 1e-028
Identities = 29/38 (76%), Positives = 31/38 (81%)
Frame = +2 / -3
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
G +T+KLLACVDALNGL HAVVG ASDTCCPLLS
Sbjct: 501 GSARWNTVKLLACVDALNGLVHAVVGAKASDTCCPLLS 388
>gb|CB681354.1|CB681354 OSJNEf07H22.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf07H22 5', mRNA sequence
Length = 685
Score = 80.8 bits (170), Expect(2) = 1e-026
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = +2 / +2
Query: 245 GKCPVDTLKLLACVDALNGLAHAVVGTNASDTCCPLLS 358
GKCPV+TLKLLACVDALNGL HA VG A DTCCPLLS
Sbjct: 32 GKCPVNTLKLLACVDALNGLVHAGVGARAIDTCCPLLS 145
Score = 63.8 bits (133), Expect(2) = 1e-026
Identities = 28/36 (77%), Positives = 28/36 (77%)
Frame = +1 / +2
Query: 394 TTIKAKALSVSLVLPVAISVLVNECGKHVPSSFQCP 501
T IKAKAL VSLVLPVAISVLVNECGKH P P
Sbjct: 182 TAIKAKALGVSLVLPVAISVLVNECGKHSPLQLPVP 289
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,762,985,113
Number of Sequences: 438736
Number of extensions: 71578927
Number of successful extensions: 546261
Number of sequences better than 1.0e-020: 25
length of database: 933,473,305
effective HSP length: 60
effective length of database: 907,149,145
effective search space used: 232230181120
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)