TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713493.2.1
(696 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB642756.1|CB642756 OSJNEb03B18.r OSJNEb Oryza sativa (j... 141 7e-032
gb|CB674476.1|CB674476 OSJNEe09I19.r OSJNEe Oryza sativa (j... 141 7e-032
dbj|AK106527.1| Oryza sativa (japonica cultivar-group) cDNA... 141 7e-032
dbj|AK121728.1| Oryza sativa (japonica cultivar-group) cDNA... 141 7e-032
gb|AACV01005523.1| Oryza sativa (japonica cultivar-group) c... 141 7e-032
ref|XM_468091.1| Oryza sativa (japonica cultivar-group), mRNA 141 7e-032
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 141 7e-032
dbj|AP004846.3| Oryza sativa (japonica cultivar-group) geno... 141 7e-032
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 141 7e-032
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 141 7e-032
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 141 7e-032
gb|AU097292.1|AU097292 AU097292 Rice shoot Oryza sativa (ja... 65 2e-024
>gb|CB642756.1|CB642756 OSJNEb03B18.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03B18 3', mRNA sequence
Length = 831
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / -1
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 501 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 322
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 321 DVTSPIAVTWPSNG 280
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / +2
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 227 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 406
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 407 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 493
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / +1
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 238 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 417
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 418 ALVALVEHQLAWAHRDIHTGRAVD 489
>gb|CB674476.1|CB674476 OSJNEe09I19.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09I19 3', mRNA sequence
Length = 819
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / -1
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 495 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 316
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 315 DVTSPIAVTWPSNG 274
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / +2
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 221 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 400
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 401 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 487
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / +1
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 232 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 411
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 412 ALVALVEHQLAWAHRDIHTGRAVD 483
>dbj|AK106527.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F01, full
insert sequence
Length = 2648
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / +1
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 2083 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 2262
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 2263 DVTSPIAVTWPSNG 2304
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / -1
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 2357 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 2178
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 2177 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 2091
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / -3
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 2346 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 2167
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 2166 ALVALVEHQLAWAHRDIHTGRAVD 2095
>dbj|AK121728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082C22, full
insert sequence
Length = 2653
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / +2
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 2180 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 2359
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 2360 DVTSPIAVTWPSNG 2401
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / -2
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 2454 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 2275
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 2274 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 2188
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / -1
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 2443 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 2264
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 2263 ALVALVEHQLAWAHRDIHTGRAVD 2192
>gb|AACV01005523.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005523, whole
genome shotgun sequence
Length = 45353
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / +3
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 21327 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 21506
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 21507 DVTSPIAVTWPSNG 21548
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / -2
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 21601 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 21422
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 21421 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 21335
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / -1
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 21590 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 21411
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 21410 ALVALVEHQLAWAHRDIHTGRAVD 21339
>ref|XM_468091.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2653
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / +2
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 2180 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 2359
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 2360 DVTSPIAVTWPSNG 2401
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / -2
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 2454 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 2275
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 2274 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 2188
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / -1
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 2443 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 2264
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 2263 ALVALVEHQLAWAHRDIHTGRAVD 2192
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / -3
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 8169159 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 8168980
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 8168979 DVTSPIAVTWPSNG 8168938
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / +2
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 8168885 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 8169064
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 8169065 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 8169151
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / +1
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 8168896 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 8169075
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 8169076 ALVALVEHQLAWAHRDIHTGRAVD 8169147
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1293_A01
Length = 139121
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / -3
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 50100 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 49921
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 49920 DVTSPIAVTWPSNG 49879
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / +2
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 49826 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 50005
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 50006 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 50092
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / +1
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 49837 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 50016
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 50017 ALVALVEHQLAWAHRDIHTGRAVD 50088
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / -1
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 19643791 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 19643612
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 19643611 DVTSPIAVTWPSNG 19643570
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / +3
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 19643517 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 19643696
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 19643697 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 19643783
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / +2
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 19643528 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 19643707
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 19643708 ALVALVEHQLAWAHRDIHTGRAVD 19643779
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / -1
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 33096855 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 33096676
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 33096675 DVTSPIAVTWPSNG 33096634
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / +2
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 33096581 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 33096760
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 33096761 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 33096847
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / +1
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 33096592 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 33096771
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 33096772 ALVALVEHQLAWAHRDIHTGRAVD 33096843
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 141 bits (303), Expect = 7e-032
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = -2 / -3
Query: 692 YQPTIASPYGVDVTVTPSKLAFDGKQQSLGYEITIAVSGNPVIVDSSYSFGSITWSDGAH 513
Y+ I SP GVDVTV+PSKL FD QSL Y+ITIA SGNPVIVD+ Y+FGS+TWSDG H
Sbjct: 33004160 YEAKIDSPSGVDVTVSPSKLVFDESHQSLSYDITIAASGNPVIVDTEYTFGSVTWSDGVH 33003981
Query: 512 DVTSPIAVTWPSNG 471
DVTSPIAVTWPSNG
Sbjct: 33003980 DVTSPIAVTWPSNG 33003939
Score = 115 bits (245), Expect = 7e-024
Identities = 55/89 (61%), Positives = 62/89 (69%)
Frame = +1 / +1
Query: 418 PQR*TVATASVYYMAAAPPLDGQVTAMGLVTSCAPSLQVMDPNE*LESTITGLPDTAMVI 597
P + T ++ YM AA P DG VTAMGLVTSC PSLQV DP STITGLPD AMV+
Sbjct: 33003886 PNQKTPKFPTLLYMDAARPFDGHVTAMGLVTSCTPSLQVTDPKVYSVSTITGLPDAAMVM 33004065
Query: 598 SYPRLCCFPSNASLLGVTVTSTPYGLAIV 684
S RL SN SLLG+TVTSTP GL+I+
Sbjct: 33004066 S*DRLWWLSSNTSLLGLTVTSTPDGLSIL 33004152
Score = 112 bits (239), Expect = 5e-023
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +3 / +3
Query: 429 DSSNSISLLHGCCSTVGRPGHGNGARDVVRAVAPGDGSERVAGIHDHRVA*HCDGDFVSQ 608
D+ S + LHGCCS V RP HG+GA DVV AVAPGD E V G+ DHRV DGD V Q
Sbjct: 33003897 DTQISNTTLHGCCSAVRRPCHGDGASDVVHAVAPGDRPEGVLGVDDHRVTRRGDGDVVGQ 33004076
Query: 609 ALLLPVERELARGHRDIHAVRAGD 680
AL+ VE +LA HRDIH RA D
Sbjct: 33004077 ALVALVEHQLAWAHRDIHTGRAVD 33004148
>gb|AU097292.1|AU097292 AU097292 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S3516, mRNA sequence
Length = 466
Score = 65.2 bits (136), Expect(3) = 2e-024
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = -2 / +3
Query: 545 FGSITWSDGAHDVTSPIAVTWPSNG 471
FGS+TWSDG HDVTSPIAVTWPSNG
Sbjct: 147 FGSVTWSDGVHDVTSPIAVTWPSNG 221
Score = 45.1 bits (92), Expect(3) = 2e-024
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = -1 / +2
Query: 687 ADDRQPVRRGCHGDPEQARVRREAAE 610
A DRQPVR GCH +P+QA VRRE E
Sbjct: 5 AQDRQPVRCGCHVEPKQAGVRREPPE 82
Score = 43.7 bits (89), Expect(3) = 2e-024
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = -2 / +1
Query: 614 QSLGYEITIAVSGNPVIVDSSYSFG 540
+SL Y+ITIA SGNPVIVD+ Y+ G
Sbjct: 79 RSLSYDITIAASGNPVIVDTEYTSG 153
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,483,909,442
Number of Sequences: 438736
Number of extensions: 96471053
Number of successful extensions: 566890
Number of sequences better than 1.0e-020: 16
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 156105115532
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)